HEADER VIRAL PROTEIN, HYDROLASE/INHIBITOR 23-AUG-22 8E7C TITLE CRYSTAL STRUCTURE OF PORCINE DELTACORONAVIRUS (HKU-15) MPRO WITH TITLE 2 PFIZER INTRAVENOUS INHIBITOR PF-00835231 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAIN PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE DELTACORONAVIRUS; SOURCE 3 ORGANISM_TAXID: 1586324; SOURCE 4 GENE: ORF1AB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CORONAVIRUS, DCOV, HKU-15, DELTACORONAVIRUS, PROTEASE, DRUG KEYWDS 2 RESISTANCE, COMPLEX, HYDROLASE, DURG DISCOVERY, MAIN PROTEASE, MPRO, KEYWDS 3 SUBSTRATE COMPLEX, PFIZER IV COMPOUND, PF-00835231, VIRAL PROTEIN, KEYWDS 4 VIRAL PROTEIN-HYDROLASE-INHIBITOR COMPLEX, HYDROLASE-INHIBITOR KEYWDS 5 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.SHAQRA,C.A.SCHIFFER REVDAT 3 25-OCT-23 8E7C 1 REMARK REVDAT 2 12-APR-23 8E7C 1 JRNL REVDAT 1 29-MAR-23 8E7C 0 JRNL AUTH S.N.ZVORNICANIN,A.M.SHAQRA,Q.J.HUANG,E.ORNELAS,M.MOGHE, JRNL AUTH 2 M.KNAPP,S.MOQUIN,D.DOVALA,C.A.SCHIFFER,N.KURT YILMAZ JRNL TITL CRYSTAL STRUCTURES OF INHIBITOR-BOUND MAIN PROTEASE FROM JRNL TITL 2 DELTA- AND GAMMA-CORONAVIRUSES. JRNL REF VIRUSES V. 15 2023 JRNL REFN ESSN 1999-4915 JRNL PMID 36992489 JRNL DOI 10.3390/V15030781 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 433.68 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 20849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.4300 - 4.6800 0.94 3029 166 0.2095 0.2293 REMARK 3 2 4.6700 - 3.7200 0.95 3012 149 0.1656 0.1937 REMARK 3 3 3.7200 - 3.2500 0.94 2977 157 0.1845 0.2158 REMARK 3 4 3.2500 - 2.9500 0.89 2854 157 0.2121 0.2759 REMARK 3 5 2.9500 - 2.7400 0.86 2732 148 0.2126 0.2664 REMARK 3 6 2.7400 - 2.5800 0.84 2631 136 0.2271 0.3042 REMARK 3 7 2.5800 - 2.4500 0.81 2567 134 0.2400 0.2841 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.433 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.1500 REMARK 3 OPERATOR: -H-K,K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4913 REMARK 3 ANGLE : 0.489 6675 REMARK 3 CHIRALITY : 0.042 740 REMARK 3 PLANARITY : 0.003 841 REMARK 3 DIHEDRAL : 8.860 681 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E7C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20849 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 23.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.16080 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.67310 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7WKU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20 % (W/V) PEG 3350, 0.20-0.30 M REMARK 280 NACL, AND 0.1 M BIS-TRIS METHANE PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.26900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 174.53800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 130.90350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 218.17250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.63450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -43.63450 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 285 REMARK 465 SER A 286 REMARK 465 TYR A 287 REMARK 465 SER A 305 REMARK 465 LEU A 306 REMARK 465 GLN A 307 REMARK 465 ASN B 277 REMARK 465 ARG B 278 REMARK 465 ASP B 279 REMARK 465 GLY B 280 REMARK 465 ALA B 281 REMARK 465 CYS B 282 REMARK 465 ILE B 283 REMARK 465 MET B 284 REMARK 465 GLY B 285 REMARK 465 SER B 286 REMARK 465 TYR B 287 REMARK 465 ASP B 288 REMARK 465 SER B 305 REMARK 465 LEU B 306 REMARK 465 GLN B 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 ASN A 167 CG OD1 ND2 REMARK 470 THR A 213 OG1 CG2 REMARK 470 VAL A 214 CG1 CG2 REMARK 470 ASN A 277 CG OD1 ND2 REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 283 CG1 CG2 CD1 REMARK 470 MET A 284 CG SD CE REMARK 470 ASP A 288 CG OD1 OD2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 ILE A 304 CG1 CG2 CD1 REMARK 470 ILE B 3 CG1 CG2 CD1 REMARK 470 HIS B 91 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 ASN B 167 CG OD1 ND2 REMARK 470 ASN B 168 CG OD1 ND2 REMARK 470 ILE B 190 CG1 CG2 CD1 REMARK 470 VAL B 214 CG1 CG2 REMARK 470 ASP B 215 CG OD1 OD2 REMARK 470 ARG B 217 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 223 CG CD OE1 NE2 REMARK 470 SER B 224 OG REMARK 470 GLN B 225 CG CD OE1 NE2 REMARK 470 LEU B 268 CG CD1 CD2 REMARK 470 GLN B 273 CG CD OE1 NE2 REMARK 470 ILE B 304 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 75 O2 GOL B 403 2.15 REMARK 500 O TYR A 181 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 -121.98 57.82 REMARK 500 LYS A 33 -111.45 54.60 REMARK 500 ALA A 114 78.82 -100.44 REMARK 500 ALA A 137 -163.45 -123.65 REMARK 500 LYS A 152 -72.99 -113.42 REMARK 500 HIS A 163 -64.50 -137.75 REMARK 500 ASN A 168 36.07 -82.84 REMARK 500 LYS A 169 19.40 59.43 REMARK 500 ASP A 215 -36.72 62.74 REMARK 500 ASN A 277 -107.66 -119.05 REMARK 500 ASN A 277 -107.66 -119.05 REMARK 500 ASP A 279 -73.44 -128.55 REMARK 500 ALA A 281 35.51 -88.10 REMARK 500 ILE A 283 -126.88 54.75 REMARK 500 ASN B 23 -137.02 61.85 REMARK 500 LYS B 33 -120.24 58.15 REMARK 500 ALA B 137 -166.29 -116.12 REMARK 500 HIS B 163 -48.58 -131.78 REMARK 500 ASN B 167 -75.93 -50.99 REMARK 500 LYS B 169 61.01 -65.48 REMARK 500 LYS B 169 62.10 -66.58 REMARK 500 ASP B 175 -167.80 -78.63 REMARK 500 PRO B 183 49.51 -87.68 REMARK 500 VAL B 214 -141.99 -94.83 REMARK 500 GLU B 290 -142.53 61.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 626 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 627 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 628 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 629 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 630 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 631 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A 632 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH B 608 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B 609 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH B 610 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH B 611 DISTANCE = 9.60 ANGSTROMS DBREF1 8E7C A 1 307 UNP A0A0E3N825_9NIDO DBREF2 8E7C A A0A0E3N825 2509 2815 DBREF1 8E7C B 1 307 UNP A0A0E3N825_9NIDO DBREF2 8E7C B A0A0E3N825 2509 2815 SEQRES 1 A 307 ALA GLY ILE LYS ILE LEU LEU HIS PRO SER GLY VAL VAL SEQRES 2 A 307 GLU ARG CYS MET VAL SER VAL VAL TYR ASN GLY SER ALA SEQRES 3 A 307 LEU ASN GLY ILE TRP LEU LYS ASN VAL VAL TYR CYS PRO SEQRES 4 A 307 ARG HIS VAL ILE GLY LYS PHE ARG GLY ASP GLN TRP THR SEQRES 5 A 307 HIS MET VAL SER ILE ALA ASP CYS ARG ASP PHE ILE VAL SEQRES 6 A 307 LYS CYS PRO ILE GLN GLY ILE GLN LEU ASN VAL GLN SER SEQRES 7 A 307 VAL LYS MET VAL GLY ALA LEU LEU GLN LEU THR VAL HIS SEQRES 8 A 307 THR ASN ASN THR ALA THR PRO ASP TYR LYS PHE GLU ARG SEQRES 9 A 307 LEU GLN PRO GLY SER SER MET THR ILE ALA CYS ALA TYR SEQRES 10 A 307 ASP GLY ILE VAL ARG HIS VAL TYR HIS VAL VAL LEU GLN SEQRES 11 A 307 LEU ASN ASN LEU ILE TYR ALA SER PHE LEU ASN GLY ALA SEQRES 12 A 307 CYS GLY SER VAL GLY TYR THR LEU LYS GLY LYS THR LEU SEQRES 13 A 307 TYR LEU HIS TYR MET HIS HIS ILE GLU PHE ASN ASN LYS SEQRES 14 A 307 THR HIS SER GLY THR ASP LEU GLU GLY ASN PHE TYR GLY SEQRES 15 A 307 PRO TYR VAL ASP GLU GLU VAL ILE GLN GLN GLN THR ALA SEQRES 16 A 307 PHE GLN TYR TYR THR ASP ASN VAL VAL ALA GLN LEU TYR SEQRES 17 A 307 ALA HIS LEU LEU THR VAL ASP ALA ARG PRO LYS TRP LEU SEQRES 18 A 307 ALA GLN SER GLN ILE SER ILE GLU ASP PHE ASN SER TRP SEQRES 19 A 307 ALA ALA ASN ASN SER PHE ALA ASN PHE PRO CYS GLU GLN SEQRES 20 A 307 THR ASN MET SER TYR ILE MET GLY LEU SER GLN THR ALA SEQRES 21 A 307 ARG VAL PRO VAL GLU ARG ILE LEU ASN THR ILE ILE GLN SEQRES 22 A 307 LEU THR THR ASN ARG ASP GLY ALA CYS ILE MET GLY SER SEQRES 23 A 307 TYR ASP PHE GLU CYS ASP TRP THR PRO GLU MET VAL TYR SEQRES 24 A 307 ASN GLN ALA PRO ILE SER LEU GLN SEQRES 1 B 307 ALA GLY ILE LYS ILE LEU LEU HIS PRO SER GLY VAL VAL SEQRES 2 B 307 GLU ARG CYS MET VAL SER VAL VAL TYR ASN GLY SER ALA SEQRES 3 B 307 LEU ASN GLY ILE TRP LEU LYS ASN VAL VAL TYR CYS PRO SEQRES 4 B 307 ARG HIS VAL ILE GLY LYS PHE ARG GLY ASP GLN TRP THR SEQRES 5 B 307 HIS MET VAL SER ILE ALA ASP CYS ARG ASP PHE ILE VAL SEQRES 6 B 307 LYS CYS PRO ILE GLN GLY ILE GLN LEU ASN VAL GLN SER SEQRES 7 B 307 VAL LYS MET VAL GLY ALA LEU LEU GLN LEU THR VAL HIS SEQRES 8 B 307 THR ASN ASN THR ALA THR PRO ASP TYR LYS PHE GLU ARG SEQRES 9 B 307 LEU GLN PRO GLY SER SER MET THR ILE ALA CYS ALA TYR SEQRES 10 B 307 ASP GLY ILE VAL ARG HIS VAL TYR HIS VAL VAL LEU GLN SEQRES 11 B 307 LEU ASN ASN LEU ILE TYR ALA SER PHE LEU ASN GLY ALA SEQRES 12 B 307 CYS GLY SER VAL GLY TYR THR LEU LYS GLY LYS THR LEU SEQRES 13 B 307 TYR LEU HIS TYR MET HIS HIS ILE GLU PHE ASN ASN LYS SEQRES 14 B 307 THR HIS SER GLY THR ASP LEU GLU GLY ASN PHE TYR GLY SEQRES 15 B 307 PRO TYR VAL ASP GLU GLU VAL ILE GLN GLN GLN THR ALA SEQRES 16 B 307 PHE GLN TYR TYR THR ASP ASN VAL VAL ALA GLN LEU TYR SEQRES 17 B 307 ALA HIS LEU LEU THR VAL ASP ALA ARG PRO LYS TRP LEU SEQRES 18 B 307 ALA GLN SER GLN ILE SER ILE GLU ASP PHE ASN SER TRP SEQRES 19 B 307 ALA ALA ASN ASN SER PHE ALA ASN PHE PRO CYS GLU GLN SEQRES 20 B 307 THR ASN MET SER TYR ILE MET GLY LEU SER GLN THR ALA SEQRES 21 B 307 ARG VAL PRO VAL GLU ARG ILE LEU ASN THR ILE ILE GLN SEQRES 22 B 307 LEU THR THR ASN ARG ASP GLY ALA CYS ILE MET GLY SER SEQRES 23 B 307 TYR ASP PHE GLU CYS ASP TRP THR PRO GLU MET VAL TYR SEQRES 24 B 307 ASN GLN ALA PRO ILE SER LEU GLN HET V2M A 401 34 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET DMS A 406 4 HET DMS A 407 4 HET DMS A 408 4 HET DMS A 409 4 HET DMS A 410 4 HET DMS A 411 4 HET V2M B 401 34 HET GOL B 402 6 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET DMS B 406 4 HET GOL B 407 6 HET GOL B 408 6 HET GOL B 409 6 HET GOL B 410 6 HET GOL B 411 6 HETNAM V2M N-[(2S)-1-({(2S,3S)-3,4-DIHYDROXY-1-[(3S)-2- HETNAM 2 V2M OXOPYRROLIDIN-3-YL]BUTAN-2-YL}AMINO)-4-METHYL-1- HETNAM 3 V2M OXOPENTAN-2-YL]-4-METHOXY-1H-INDOLE-2-CARBOXAMIDE HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETSYN V2M N-[(2S)-1-({(2S)-4-HYDROXY-3-OXO-1-[(3S)-2- HETSYN 2 V2M OXOPYRROLIDIN-3-YL]BUTAN-2-YL}AMINO)-4-METHYL-1- HETSYN 3 V2M OXOPENTAN-2-YL]-4-METHOXY-1H-INDOLE-2-CARBOXAMIDE, HETSYN 4 V2M BOUND FORM HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 V2M 2(C24 H34 N4 O6) FORMUL 4 GOL 13(C3 H8 O3) FORMUL 8 DMS 7(C2 H6 O S) FORMUL 25 HOH *243(H2 O) HELIX 1 AA1 SER A 10 ARG A 15 1 6 HELIX 2 AA2 HIS A 41 GLY A 44 5 4 HELIX 3 AA3 GLN A 50 ILE A 57 1 8 HELIX 4 AA4 ASP A 59 ARG A 61 5 3 HELIX 5 AA5 TYR A 199 VAL A 214 1 16 HELIX 6 AA6 SER A 227 ALA A 236 1 10 HELIX 7 AA7 GLU A 246 ALA A 260 1 15 HELIX 8 AA8 PRO A 263 LEU A 274 1 12 HELIX 9 AA9 THR A 294 ASN A 300 1 7 HELIX 10 AB1 SER B 10 ARG B 15 1 6 HELIX 11 AB2 HIS B 41 GLY B 44 5 4 HELIX 12 AB3 GLN B 50 ILE B 57 1 8 HELIX 13 AB4 TYR B 199 VAL B 214 1 16 HELIX 14 AB5 SER B 227 ASN B 238 1 12 HELIX 15 AB6 THR B 248 ARG B 261 1 14 HELIX 16 AB7 PRO B 263 THR B 276 1 14 HELIX 17 AB8 THR B 294 GLN B 301 1 8 SHEET 1 AA1 7 ILE A 72 LEU A 74 0 SHEET 2 AA1 7 PHE A 63 CYS A 67 -1 N VAL A 65 O LEU A 74 SHEET 3 AA1 7 MET A 17 TYR A 22 -1 N VAL A 21 O ILE A 64 SHEET 4 AA1 7 SER A 25 LEU A 32 -1 O GLY A 29 N VAL A 18 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N ILE A 30 SHEET 6 AA1 7 LEU A 85 VAL A 90 -1 O LEU A 88 N VAL A 36 SHEET 7 AA1 7 VAL A 76 VAL A 82 -1 N GLN A 77 O THR A 89 SHEET 1 AA2 5 ASP A 99 PHE A 102 0 SHEET 2 AA2 5 THR A 155 PHE A 166 1 O LEU A 156 N ASP A 99 SHEET 3 AA2 5 VAL A 147 LEU A 151 -1 N THR A 150 O TYR A 157 SHEET 4 AA2 5 SER A 110 TYR A 117 -1 N THR A 112 O TYR A 149 SHEET 5 AA2 5 ILE A 120 VAL A 128 -1 O TYR A 125 N ILE A 113 SHEET 1 AA3 3 ASP A 99 PHE A 102 0 SHEET 2 AA3 3 THR A 155 PHE A 166 1 O LEU A 156 N ASP A 99 SHEET 3 AA3 3 THR A 170 THR A 174 -1 O THR A 170 N PHE A 166 SHEET 1 AA4 7 ILE B 72 LEU B 74 0 SHEET 2 AA4 7 ILE B 64 CYS B 67 -1 N VAL B 65 O LEU B 74 SHEET 3 AA4 7 MET B 17 TYR B 22 -1 N SER B 19 O LYS B 66 SHEET 4 AA4 7 SER B 25 LEU B 32 -1 O GLY B 29 N VAL B 18 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N ILE B 30 SHEET 6 AA4 7 LEU B 85 VAL B 90 -1 O LEU B 86 N CYS B 38 SHEET 7 AA4 7 VAL B 76 VAL B 82 -1 N LYS B 80 O GLN B 87 SHEET 1 AA5 5 ASP B 99 PHE B 102 0 SHEET 2 AA5 5 THR B 155 GLU B 165 1 O LEU B 156 N ASP B 99 SHEET 3 AA5 5 VAL B 147 LEU B 151 -1 N THR B 150 O TYR B 157 SHEET 4 AA5 5 SER B 110 TYR B 117 -1 N THR B 112 O TYR B 149 SHEET 5 AA5 5 ILE B 120 VAL B 128 -1 O TYR B 125 N ILE B 113 SHEET 1 AA6 3 ASP B 99 PHE B 102 0 SHEET 2 AA6 3 THR B 155 GLU B 165 1 O LEU B 156 N ASP B 99 SHEET 3 AA6 3 HIS B 171 THR B 174 -1 O SER B 172 N ILE B 164 LINK SG CYS A 144 C34 V2M A 401 1555 1555 1.77 LINK SG CYS B 144 C34 V2M B 401 1555 1555 1.77 CISPEP 1 PHE A 243 PRO A 244 0 -0.20 CISPEP 2 PHE B 243 PRO B 244 0 -2.15 CRYST1 64.144 64.144 261.807 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015590 0.009001 0.000000 0.00000 SCALE2 0.000000 0.018002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003820 0.00000