HEADER VIRAL PROTEIN 24-AUG-22 8E7N TITLE CRYSTAL STRUCTURE OF BELUGA WHALE GAMMACORONAVIRUS SW1 MPRO WITH GC- TITLE 2 376 CAPTURED IN TWO CONFORMATIONAL STATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAIN PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPRO; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BELUGA WHALE CORONAVIRUS SW1; SOURCE 3 ORGANISM_TAXID: 694015; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GAMMACORONAVIRUS, PROTEASE, DRUG RESISTANCE, COMPLEX, HYDROLASE, DURG KEYWDS 2 DISCOVERY, MAIN PROTEASE, MPRO, SUBSTRATE COMPLEX, GC-376, VIRAL KEYWDS 3 PROTEIN, VIRAL PROTEIN-HYDROLASE-INHIBITOR COMPLEX, SW1, BELUGA KEYWDS 4 WHALE, WHALE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.SHAQRA,C.A.SCHIFFER REVDAT 3 03-APR-24 8E7N 1 REMARK REVDAT 2 12-APR-23 8E7N 1 JRNL REVDAT 1 29-MAR-23 8E7N 0 JRNL AUTH S.N.ZVORNICANIN,A.M.SHAQRA,Q.J.HUANG,E.ORNELAS,M.MOGHE, JRNL AUTH 2 M.KNAPP,S.MOQUIN,D.DOVALA,C.A.SCHIFFER,N.KURT YILMAZ JRNL TITL CRYSTAL STRUCTURES OF INHIBITOR-BOUND MAIN PROTEASE FROM JRNL TITL 2 DELTA- AND GAMMA-CORONAVIRUSES. JRNL REF VIRUSES V. 15 2023 JRNL REFN ESSN 1999-4915 JRNL PMID 36992489 JRNL DOI 10.3390/V15030781 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 81528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.450 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 12.2400 - 3.9400 0.95 5767 147 0.1365 0.1605 REMARK 3 2 3.9400 - 3.1400 0.98 5898 141 0.1327 0.1610 REMARK 3 3 3.1400 - 2.7500 0.99 5881 155 0.1554 0.1874 REMARK 3 4 2.7500 - 2.5000 0.98 5880 149 0.1580 0.2019 REMARK 3 5 2.5000 - 2.3200 0.97 5820 153 0.1623 0.1988 REMARK 3 6 2.3200 - 2.1900 0.97 5804 132 0.1532 0.1912 REMARK 3 7 2.1900 - 2.0800 0.97 5749 144 0.1576 0.2030 REMARK 3 8 2.0800 - 1.9900 0.96 5710 157 0.1580 0.2319 REMARK 3 9 1.9900 - 1.9100 0.95 5643 131 0.1754 0.2109 REMARK 3 10 1.9100 - 1.8500 0.94 5600 141 0.1879 0.2212 REMARK 3 11 1.8500 - 1.7900 0.93 5568 142 0.1998 0.2222 REMARK 3 12 1.7900 - 1.7400 0.92 5482 131 0.2151 0.2528 REMARK 3 13 1.7400 - 1.6900 0.91 5417 140 0.2169 0.2511 REMARK 3 14 1.6900 - 1.6500 0.90 5310 136 0.2431 0.2755 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.159 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.391 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 4850 REMARK 3 ANGLE : 1.512 6584 REMARK 3 CHIRALITY : 0.103 706 REMARK 3 PLANARITY : 0.011 840 REMARK 3 DIHEDRAL : 15.066 1640 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000267982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : CRYSALISPRO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81531 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 12.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05568 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48620 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NOT SUBMITTED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20 % (W/V) PEG 3350, 0.20-0.30 M REMARK 280 NACL, AND 0.1 M BIS-TRIS METHANE PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.07950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 219 REMARK 465 GLY A 220 REMARK 465 PRO A 221 REMARK 465 GLN A 303 REMARK 465 GLY B 299 REMARK 465 ILE B 300 REMARK 465 VAL B 301 REMARK 465 LEU B 302 REMARK 465 GLN B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 ASN A 151 CG OD1 ND2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 VAL A 301 CG1 CG2 REMARK 470 LEU A 302 CG CD1 CD2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 ARG B 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 ASN B 151 CG OD1 ND2 REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 LEU B 188 CG CD1 CD2 REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 GLU B 228 CG CD OE1 OE2 REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 527 O HOH B 674 1.94 REMARK 500 O HOH A 680 O HOH A 794 1.96 REMARK 500 O HOH A 705 O HOH A 718 2.00 REMARK 500 O HOH A 707 O HOH A 778 2.03 REMARK 500 NE2 GLN B 15 O HOH B 501 2.03 REMARK 500 NZ LYS B 4 O HOH B 502 2.08 REMARK 500 O HOH B 604 O HOH B 705 2.10 REMARK 500 O HOH A 683 O HOH A 770 2.11 REMARK 500 O HOH A 883 O HOH A 885 2.11 REMARK 500 NH1 ARG A 52 O HOH A 501 2.11 REMARK 500 O HOH A 708 O HOH A 786 2.12 REMARK 500 O HOH A 726 O HOH B 768 2.12 REMARK 500 O HOH B 649 O HOH B 858 2.13 REMARK 500 O HOH A 568 O HOH A 752 2.13 REMARK 500 O HOH B 735 O HOH B 787 2.13 REMARK 500 O HOH A 867 O HOH A 895 2.14 REMARK 500 NZ LYS B 4 O HOH B 503 2.16 REMARK 500 O HOH A 649 O HOH B 748 2.17 REMARK 500 OD2 ASP A 34 O HOH A 502 2.17 REMARK 500 O HOH B 759 O HOH B 821 2.17 REMARK 500 N GLN A 189 O HOH A 503 2.17 REMARK 500 O HOH B 878 O HOH B 882 2.18 REMARK 500 O HOH A 548 O HOH A 564 2.18 REMARK 500 O HOH A 835 O HOH A 838 2.18 REMARK 500 O HOH B 696 O HOH B 769 2.19 REMARK 500 O HOH A 745 O HOH A 878 2.19 REMARK 500 O2 GOL B 403 O HOH B 504 2.19 REMARK 500 O HOH B 556 O HOH B 781 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 582 O HOH A 835 2656 1.91 REMARK 500 O HOH A 840 O HOH A 886 2646 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 6 CG - SD - CE ANGL. DEV. = -14.0 DEGREES REMARK 500 LEU A 122 CB - CG - CD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 -131.91 54.86 REMARK 500 ASN B 33 -125.40 48.57 REMARK 500 HIS B 41 3.05 -69.61 REMARK 500 ASP B 214 16.56 -140.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 906 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 907 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 908 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH A 909 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A 910 DISTANCE = 7.90 ANGSTROMS REMARK 525 HOH A 911 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH A 912 DISTANCE = 11.30 ANGSTROMS REMARK 525 HOH B 875 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 876 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 877 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B 878 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH B 879 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B 880 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH B 881 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH B 882 DISTANCE = 8.61 ANGSTROMS REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: (1S,2S)-2-({N-[(BENZYLOXY)CARBONYL]-L-LEUCYL}AMINO)- REMARK 630 1-HYDROXY-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPANE-1-SULFONIC ACID REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 K36 A 401 REMARK 630 K36 B 401 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ LEU 04F REMARK 630 DETAILS: NULL REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: (1R,2S)-2-({N-[(BENZYLOXY)CARBONYL]-L-LEUCYL}AMINO)- REMARK 630 1-HYDROXY-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPANE-1-SULFONIC ACID REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 B1S A 402 REMARK 630 B1S B 402 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ LEU B1Y REMARK 630 DETAILS: NULL DBREF 8E7N A 1 303 UNP B2BW31 B2BW31_9GAMC 2760 3062 DBREF 8E7N B 1 303 UNP B2BW31 B2BW31_9GAMC 2760 3062 SEQRES 1 A 303 ALA GLY ILE LYS LYS MET VAL ALA PRO SER SER ALA VAL SEQRES 2 A 303 GLU GLN CYS VAL VAL SER VAL VAL HIS GLY ASN THR GLN SEQRES 3 A 303 LEU ASN GLY LEU TRP LEU ASN ASP TYR VAL LEU CYS PRO SEQRES 4 A 303 ARG HIS ILE LEU GLY LYS TYR THR GLY GLU GLN TRP ARG SEQRES 5 A 303 ASP ALA LEU ILE ASN ALA ASN ASN PHE ASP PHE HIS ILE SEQRES 6 A 303 LEU TYR LYS GLY MET GLU LEU GLN VAL VAL GLY ARG GLU SEQRES 7 A 303 LEU VAL GLY ALA LEU LEU LYS LEU LYS VAL SER MET VAL SEQRES 8 A 303 ASN ALA ASN THR PRO LYS TYR LYS PHE ALA LYS ALA ARG SEQRES 9 A 303 ILE GLY ASP ASN PHE SER ILE ALA CYS ALA TYR ASN GLY SEQRES 10 A 303 HIS VAL SER GLY LEU TYR THR VAL THR LEU ARG GLU ASN SEQRES 11 A 303 GLY THR LEU LYS GLY SER PHE MET SER GLY SER CYS GLY SEQRES 12 A 303 SER VAL GLY TYR ASN VAL THR ASN GLU GLY VAL GLU PHE SEQRES 13 A 303 VAL TYR MET HIS HIS LEU GLU LEU PRO GLY CYS VAL HIS SEQRES 14 A 303 GLY GLY SER ASP LEU HIS GLY ILE PHE TYR GLY GLY TYR SEQRES 15 A 303 VAL ASP GLU GLU VAL LEU GLN ARG ILE PRO PRO ALA PRO SEQRES 16 A 303 ALA ASN SER ARG ASN ILE VAL ALA TRP LEU TYR ALA ALA SEQRES 17 A 303 VAL TYR ASN ASN CYS ASP TRP PHE VAL LYS TYR GLY PRO SEQRES 18 A 303 LYS GLN VAL MET SER VAL GLU ASP PHE ASN GLU TRP ALA SEQRES 19 A 303 SER GLY TYR GLY PHE THR LYS PHE GLU TYR HIS LEU ALA SEQRES 20 A 303 PHE ASP VAL PHE SER ALA ALA THR GLY VAL SER VAL GLU SEQRES 21 A 303 GLN MET LEU ALA ALA ILE LYS GLU LEU ALA ASP GLY TRP SEQRES 22 A 303 ASN TYR ALA PRO VAL LEU GLY SER PHE HIS LEU ASP ASP SEQRES 23 A 303 GLU TYR SER PRO GLU MET ILE MET GLN GLN THR SER GLY SEQRES 24 A 303 ILE VAL LEU GLN SEQRES 1 B 303 ALA GLY ILE LYS LYS MET VAL ALA PRO SER SER ALA VAL SEQRES 2 B 303 GLU GLN CYS VAL VAL SER VAL VAL HIS GLY ASN THR GLN SEQRES 3 B 303 LEU ASN GLY LEU TRP LEU ASN ASP TYR VAL LEU CYS PRO SEQRES 4 B 303 ARG HIS ILE LEU GLY LYS TYR THR GLY GLU GLN TRP ARG SEQRES 5 B 303 ASP ALA LEU ILE ASN ALA ASN ASN PHE ASP PHE HIS ILE SEQRES 6 B 303 LEU TYR LYS GLY MET GLU LEU GLN VAL VAL GLY ARG GLU SEQRES 7 B 303 LEU VAL GLY ALA LEU LEU LYS LEU LYS VAL SER MET VAL SEQRES 8 B 303 ASN ALA ASN THR PRO LYS TYR LYS PHE ALA LYS ALA ARG SEQRES 9 B 303 ILE GLY ASP ASN PHE SER ILE ALA CYS ALA TYR ASN GLY SEQRES 10 B 303 HIS VAL SER GLY LEU TYR THR VAL THR LEU ARG GLU ASN SEQRES 11 B 303 GLY THR LEU LYS GLY SER PHE MET SER GLY SER CYS GLY SEQRES 12 B 303 SER VAL GLY TYR ASN VAL THR ASN GLU GLY VAL GLU PHE SEQRES 13 B 303 VAL TYR MET HIS HIS LEU GLU LEU PRO GLY CYS VAL HIS SEQRES 14 B 303 GLY GLY SER ASP LEU HIS GLY ILE PHE TYR GLY GLY TYR SEQRES 15 B 303 VAL ASP GLU GLU VAL LEU GLN ARG ILE PRO PRO ALA PRO SEQRES 16 B 303 ALA ASN SER ARG ASN ILE VAL ALA TRP LEU TYR ALA ALA SEQRES 17 B 303 VAL TYR ASN ASN CYS ASP TRP PHE VAL LYS TYR GLY PRO SEQRES 18 B 303 LYS GLN VAL MET SER VAL GLU ASP PHE ASN GLU TRP ALA SEQRES 19 B 303 SER GLY TYR GLY PHE THR LYS PHE GLU TYR HIS LEU ALA SEQRES 20 B 303 PHE ASP VAL PHE SER ALA ALA THR GLY VAL SER VAL GLU SEQRES 21 B 303 GLN MET LEU ALA ALA ILE LYS GLU LEU ALA ASP GLY TRP SEQRES 22 B 303 ASN TYR ALA PRO VAL LEU GLY SER PHE HIS LEU ASP ASP SEQRES 23 B 303 GLU TYR SER PRO GLU MET ILE MET GLN GLN THR SER GLY SEQRES 24 B 303 ILE VAL LEU GLN HET K36 A 401 29 HET B1S A 402 29 HET GOL A 403 6 HET GOL A 404 6 HET K36 B 401 29 HET B1S B 402 29 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET GOL B 406 6 HETNAM K36 (1S,2S)-2-({N-[(BENZYLOXY)CARBONYL]-L-LEUCYL}AMINO)-1- HETNAM 2 K36 HYDROXY-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPANE-1- HETNAM 3 K36 SULFONIC ACID HETNAM B1S (1R,2S)-2-({N-[(BENZYLOXY)CARBONYL]-L-LEUCYL}AMINO)-1- HETNAM 2 B1S HYDROXY-3-[(3S)-2-OXOPYRROLIDIN-3-YL]PROPANE-1- HETNAM 3 B1S SULFONIC ACID HETNAM GOL GLYCEROL HETSYN K36 GC376 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 K36 2(C21 H31 N3 O8 S) FORMUL 4 B1S 2(C21 H31 N3 O8 S) FORMUL 5 GOL 6(C3 H8 O3) FORMUL 13 HOH *794(H2 O) HELIX 1 AA1 SER A 10 GLN A 15 1 6 HELIX 2 AA2 HIS A 41 GLY A 44 5 4 HELIX 3 AA3 GLU A 49 ALA A 58 1 10 HELIX 4 AA4 ASN A 59 PHE A 63 5 5 HELIX 5 AA5 ASN A 197 ASN A 211 1 15 HELIX 6 AA6 ASP A 214 LYS A 218 5 5 HELIX 7 AA7 SER A 226 GLY A 236 1 11 HELIX 8 AA8 LEU A 246 GLY A 256 1 11 HELIX 9 AA9 SER A 258 ALA A 270 1 13 HELIX 10 AB1 SER A 289 SER A 298 1 10 HELIX 11 AB2 SER B 10 GLN B 15 1 6 HELIX 12 AB3 HIS B 41 GLY B 44 5 4 HELIX 13 AB4 GLU B 49 ALA B 58 1 10 HELIX 14 AB5 ASN B 59 PHE B 61 5 3 HELIX 15 AB6 ASN B 197 ASN B 211 1 15 HELIX 16 AB7 ASP B 214 TYR B 219 1 6 HELIX 17 AB8 SER B 226 GLY B 236 1 11 HELIX 18 AB9 LEU B 246 GLY B 256 1 11 HELIX 19 AC1 SER B 258 ALA B 270 1 13 HELIX 20 AC2 SER B 289 GLN B 295 1 7 SHEET 1 AA1 7 MET A 70 LEU A 72 0 SHEET 2 AA1 7 HIS A 64 TYR A 67 -1 N TYR A 67 O MET A 70 SHEET 3 AA1 7 VAL A 17 HIS A 22 -1 N VAL A 21 O HIS A 64 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 TYR A 35 PRO A 39 -1 O LEU A 37 N LEU A 30 SHEET 6 AA1 7 LEU A 83 VAL A 88 -1 O LEU A 86 N VAL A 36 SHEET 7 AA1 7 VAL A 74 VAL A 80 -1 N GLU A 78 O LYS A 85 SHEET 1 AA2 5 TYR A 98 PHE A 100 0 SHEET 2 AA2 5 VAL A 154 LEU A 164 1 O PHE A 156 N LYS A 99 SHEET 3 AA2 5 VAL A 145 VAL A 149 -1 N ASN A 148 O GLU A 155 SHEET 4 AA2 5 ASN A 108 TYR A 115 -1 N SER A 110 O TYR A 147 SHEET 5 AA2 5 HIS A 118 THR A 126 -1 O TYR A 123 N ILE A 111 SHEET 1 AA3 3 TYR A 98 PHE A 100 0 SHEET 2 AA3 3 VAL A 154 LEU A 164 1 O PHE A 156 N LYS A 99 SHEET 3 AA3 3 VAL A 168 SER A 172 -1 O VAL A 168 N LEU A 164 SHEET 1 AA4 7 MET B 70 LEU B 72 0 SHEET 2 AA4 7 PHE B 63 TYR B 67 -1 N TYR B 67 O MET B 70 SHEET 3 AA4 7 VAL B 17 HIS B 22 -1 N VAL B 21 O HIS B 64 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O GLY B 29 N VAL B 18 SHEET 5 AA4 7 TYR B 35 PRO B 39 -1 O TYR B 35 N LEU B 32 SHEET 6 AA4 7 LEU B 83 VAL B 88 -1 O LEU B 86 N VAL B 36 SHEET 7 AA4 7 VAL B 74 VAL B 80 -1 N GLU B 78 O LYS B 85 SHEET 1 AA5 5 TYR B 98 PHE B 100 0 SHEET 2 AA5 5 VAL B 154 LEU B 164 1 O PHE B 156 N LYS B 99 SHEET 3 AA5 5 VAL B 145 VAL B 149 -1 N ASN B 148 O GLU B 155 SHEET 4 AA5 5 ASN B 108 TYR B 115 -1 N ALA B 112 O VAL B 145 SHEET 5 AA5 5 HIS B 118 THR B 126 -1 O SER B 120 N CYS B 113 SHEET 1 AA6 3 TYR B 98 PHE B 100 0 SHEET 2 AA6 3 VAL B 154 LEU B 164 1 O PHE B 156 N LYS B 99 SHEET 3 AA6 3 VAL B 168 SER B 172 -1 O VAL B 168 N LEU B 164 LINK SG CYS A 142 C21AK36 A 401 1555 1555 1.85 LINK SG CYS A 142 C21BB1S A 402 1555 1555 1.76 LINK SG CYS B 142 C21AK36 B 401 1555 1555 1.74 LINK SG CYS B 142 C21BB1S B 402 1555 1555 2.00 CRYST1 63.083 84.159 68.498 90.00 93.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015852 0.000000 0.000855 0.00000 SCALE2 0.000000 0.011882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014620 0.00000