HEADER TRANSFERASE/DNA 25-AUG-22 8E86 TITLE HUMAN DNA POLYMERASE ETA-DNA-RC-ENDED PRIMER-DGMPNPP TERNARY MISMATCH TITLE 2 COMPLEX WITH MN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE ETA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RAD30 HOMOLOG A,XERODERMA PIGMENTOSUM VARIANT TYPE PROTEIN; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*CP*AP*TP*TP*GP*TP*GP*AP*CP*GP*CP*T)-3'); COMPND 9 CHAIN: T; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA/RNA (5'-D(*AP*GP*CP*GP*TP*CP*A)-R(P*C)-3'); COMPND 13 CHAIN: P; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLH, RAD30, RAD30A, XPV; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS DNA POLYMERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,Y.GAO REVDAT 4 25-OCT-23 8E86 1 REMARK REVDAT 3 08-MAR-23 8E86 1 JRNL REVDAT 2 08-FEB-23 8E86 1 JRNL REVDAT 1 01-FEB-23 8E86 0 JRNL AUTH C.CHANG,C.LEE LUO,S.ELERAKY,A.LIN,G.ZHOU,Y.GAO JRNL TITL PRIMER TERMINAL RIBONUCLEOTIDE ALTERS THE ACTIVE SITE JRNL TITL 2 DYNAMICS OF DNA POLYMERASE ETA AND REDUCES DNA SYNTHESIS JRNL TITL 3 FIDELITY. JRNL REF J.BIOL.CHEM. V. 299 02938 2023 JRNL REFN ESSN 1083-351X JRNL PMID 36702254 JRNL DOI 10.1016/J.JBC.2023.102938 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 42941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 2073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2000 - 4.3900 1.00 2795 128 0.1579 0.1565 REMARK 3 2 4.3900 - 3.4900 1.00 2719 151 0.1565 0.1636 REMARK 3 3 3.4900 - 3.0500 1.00 2744 138 0.1899 0.1917 REMARK 3 4 3.0500 - 2.7700 1.00 2752 129 0.2141 0.2040 REMARK 3 5 2.7700 - 2.5700 1.00 2681 178 0.2168 0.2322 REMARK 3 6 2.5700 - 2.4200 1.00 2716 148 0.2202 0.2428 REMARK 3 7 2.4200 - 2.3000 1.00 2724 142 0.2071 0.2332 REMARK 3 8 2.3000 - 2.2000 1.00 2720 126 0.2129 0.2286 REMARK 3 9 2.2000 - 2.1100 1.00 2765 119 0.2079 0.2540 REMARK 3 10 2.1100 - 2.0400 1.00 2702 146 0.2227 0.2489 REMARK 3 11 2.0400 - 1.9800 1.00 2714 135 0.2222 0.2345 REMARK 3 12 1.9800 - 1.9200 1.00 2741 126 0.2115 0.2348 REMARK 3 13 1.9200 - 1.8700 1.00 2682 160 0.2264 0.2679 REMARK 3 14 1.8700 - 1.8200 1.00 2721 125 0.2411 0.2609 REMARK 3 15 1.8200 - 1.7800 0.99 2692 122 0.2959 0.2982 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8E86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000267995. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.127230 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84523 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 32.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.56 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.74 REMARK 200 R MERGE FOR SHELL (I) : 1.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7M7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000MME, 0.1 M MES, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.35433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.70867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.03150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.38583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.67717 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 154 REMARK 465 THR A 155 REMARK 465 THR A 156 REMARK 465 ALA A 157 REMARK 465 GLU A 158 REMARK 465 GLU A 159 REMARK 465 THR A 160 REMARK 465 VAL A 161 REMARK 465 ILE A 411 REMARK 465 GLN A 412 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 470 GLN A 162 CG CD OE1 NE2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 168 CD CE NZ REMARK 470 DC T 2 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DC T 2 N1 C2 O2 N3 C4 N4 C5 REMARK 470 DC T 2 C6 REMARK 470 DT T 4 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT T 4 C7 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 10 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT T 13 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 16 64.63 23.35 REMARK 500 TYR A 39 -178.88 72.06 REMARK 500 LYS A 40 -28.96 -155.36 REMARK 500 SER A 62 -1.74 77.70 REMARK 500 SER A 257 -11.55 96.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD2 REMARK 620 2 ASP A 115 OD1 93.8 REMARK 620 3 GLU A 116 OE1 85.8 95.6 REMARK 620 4 XG4 A 501 O1A 103.8 90.1 168.5 REMARK 620 5 HOH A 675 O 162.4 90.9 76.9 93.1 REMARK 620 6 HOH A 686 O 88.6 170.1 94.2 80.0 89.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 MET A 14 O 82.2 REMARK 620 3 ASP A 115 OD2 94.3 84.9 REMARK 620 4 XG4 A 501 O1A 104.5 169.7 86.8 REMARK 620 5 XG4 A 501 O1B 166.8 87.2 92.5 87.1 REMARK 620 6 XG4 A 501 O2G 88.3 98.7 175.8 89.4 85.6 REMARK 620 N 1 2 3 4 5 DBREF 8E86 A 1 432 UNP Q9Y253 POLH_HUMAN 1 432 DBREF 8E86 T 2 13 PDB 8E86 8E86 2 13 DBREF 8E86 P 2 9 PDB 8E86 8E86 2 9 SEQADV 8E86 GLY A -2 UNP Q9Y253 EXPRESSION TAG SEQADV 8E86 PRO A -1 UNP Q9Y253 EXPRESSION TAG SEQADV 8E86 HIS A 0 UNP Q9Y253 EXPRESSION TAG SEQRES 1 A 435 GLY PRO HIS MET ALA THR GLY GLN ASP ARG VAL VAL ALA SEQRES 2 A 435 LEU VAL ASP MET ASP CYS PHE PHE VAL GLN VAL GLU GLN SEQRES 3 A 435 ARG GLN ASN PRO HIS LEU ARG ASN LYS PRO CYS ALA VAL SEQRES 4 A 435 VAL GLN TYR LYS SER TRP LYS GLY GLY GLY ILE ILE ALA SEQRES 5 A 435 VAL SER TYR GLU ALA ARG ALA PHE GLY VAL THR ARG SER SEQRES 6 A 435 MET TRP ALA ASP ASP ALA LYS LYS LEU CYS PRO ASP LEU SEQRES 7 A 435 LEU LEU ALA GLN VAL ARG GLU SER ARG GLY LYS ALA ASN SEQRES 8 A 435 LEU THR LYS TYR ARG GLU ALA SER VAL GLU VAL MET GLU SEQRES 9 A 435 ILE MET SER ARG PHE ALA VAL ILE GLU ARG ALA SER ILE SEQRES 10 A 435 ASP GLU ALA TYR VAL ASP LEU THR SER ALA VAL GLN GLU SEQRES 11 A 435 ARG LEU GLN LYS LEU GLN GLY GLN PRO ILE SER ALA ASP SEQRES 12 A 435 LEU LEU PRO SER THR TYR ILE GLU GLY LEU PRO GLN GLY SEQRES 13 A 435 PRO THR THR ALA GLU GLU THR VAL GLN LYS GLU GLY MET SEQRES 14 A 435 ARG LYS GLN GLY LEU PHE GLN TRP LEU ASP SER LEU GLN SEQRES 15 A 435 ILE ASP ASN LEU THR SER PRO ASP LEU GLN LEU THR VAL SEQRES 16 A 435 GLY ALA VAL ILE VAL GLU GLU MET ARG ALA ALA ILE GLU SEQRES 17 A 435 ARG GLU THR GLY PHE GLN CYS SER ALA GLY ILE SER HIS SEQRES 18 A 435 ASN LYS VAL LEU ALA LYS LEU ALA CYS GLY LEU ASN LYS SEQRES 19 A 435 PRO ASN ARG GLN THR LEU VAL SER HIS GLY SER VAL PRO SEQRES 20 A 435 GLN LEU PHE SER GLN MET PRO ILE ARG LYS ILE ARG SER SEQRES 21 A 435 LEU GLY GLY LYS LEU GLY ALA SER VAL ILE GLU ILE LEU SEQRES 22 A 435 GLY ILE GLU TYR MET GLY GLU LEU THR GLN PHE THR GLU SEQRES 23 A 435 SER GLN LEU GLN SER HIS PHE GLY GLU LYS ASN GLY SER SEQRES 24 A 435 TRP LEU TYR ALA MET CYS ARG GLY ILE GLU HIS ASP PRO SEQRES 25 A 435 VAL LYS PRO ARG GLN LEU PRO LYS THR ILE GLY CYS SER SEQRES 26 A 435 LYS ASN PHE PRO GLY LYS THR ALA LEU ALA THR ARG GLU SEQRES 27 A 435 GLN VAL GLN TRP TRP LEU LEU GLN LEU ALA GLN GLU LEU SEQRES 28 A 435 GLU GLU ARG LEU THR LYS ASP ARG ASN ASP ASN ASP ARG SEQRES 29 A 435 VAL ALA THR GLN LEU VAL VAL SER ILE ARG VAL GLN GLY SEQRES 30 A 435 ASP LYS ARG LEU SER SER LEU ARG ARG CYS CYS ALA LEU SEQRES 31 A 435 THR ARG TYR ASP ALA HIS LYS MET SER HIS ASP ALA PHE SEQRES 32 A 435 THR VAL ILE LYS ASN CYS ASN THR SER GLY ILE GLN THR SEQRES 33 A 435 GLU TRP SER PRO PRO LEU THR MET LEU PHE LEU CYS ALA SEQRES 34 A 435 THR LYS PHE SER ALA SER SEQRES 1 T 12 DC DA DT DT DG DT DG DA DC DG DC DT SEQRES 1 P 8 DA DG DC DG DT DC DA C HET XG4 A 501 31 HET MN A 502 1 HET MN A 503 1 HETNAM XG4 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY) HETNAM 2 XG4 PHOSPHORYL]AMINO}PHOSPHORYL]GUANOSINE HETNAM MN MANGANESE (II) ION FORMUL 4 XG4 C10 H17 N6 O12 P3 FORMUL 5 MN 2(MN 2+) FORMUL 7 HOH *108(H2 O) HELIX 1 AA1 CYS A 16 ASN A 26 1 11 HELIX 2 AA2 PRO A 27 ARG A 30 5 4 HELIX 3 AA3 SER A 51 ALA A 56 1 6 HELIX 4 AA4 TRP A 64 CYS A 72 1 9 HELIX 5 AA5 LEU A 89 ALA A 107 1 19 HELIX 6 AA6 LEU A 121 GLN A 133 1 13 HELIX 7 AA7 SER A 138 LEU A 142 5 5 HELIX 8 AA8 LYS A 163 SER A 177 1 15 HELIX 9 AA9 SER A 185 GLY A 209 1 25 HELIX 10 AB1 ASN A 219 ASN A 230 1 12 HELIX 11 AB2 SER A 239 GLY A 241 5 3 HELIX 12 AB3 SER A 242 GLN A 249 1 8 HELIX 13 AB4 MET A 250 ILE A 255 5 6 HELIX 14 AB5 GLY A 260 GLY A 271 1 12 HELIX 15 AB6 TYR A 274 PHE A 281 5 8 HELIX 16 AB7 THR A 282 GLY A 291 1 10 HELIX 17 AB8 GLY A 291 CYS A 302 1 12 HELIX 18 AB9 PRO A 326 ALA A 330 5 5 HELIX 19 AC1 ARG A 334 ASP A 360 1 27 HELIX 20 AC2 ASP A 391 LYS A 404 1 14 HELIX 21 AC3 ASN A 405 ASN A 407 5 3 SHEET 1 AA1 6 ILE A 109 SER A 113 0 SHEET 2 AA1 6 GLU A 116 ASP A 120 -1 O GLU A 116 N ALA A 112 SHEET 3 AA1 6 VAL A 9 MET A 14 -1 N ALA A 10 O VAL A 119 SHEET 4 AA1 6 CYS A 212 SER A 217 -1 O SER A 217 N VAL A 9 SHEET 5 AA1 6 GLN A 235 LEU A 237 1 O THR A 236 N ILE A 216 SHEET 6 AA1 6 THR A 145 ILE A 147 1 N TYR A 146 O LEU A 237 SHEET 1 AA2 3 GLY A 46 VAL A 50 0 SHEET 2 AA2 3 CYS A 34 GLN A 38 -1 N VAL A 36 O ILE A 48 SHEET 3 AA2 3 LEU A 76 GLN A 79 1 O ALA A 78 N VAL A 37 SHEET 1 AA3 2 ARG A 81 SER A 83 0 SHEET 2 AA3 2 LYS A 86 ASN A 88 -1 O ASN A 88 N ARG A 81 SHEET 1 AA4 3 ILE A 319 ASN A 324 0 SHEET 2 AA4 3 GLU A 414 ALA A 431 -1 O ALA A 426 N ILE A 319 SHEET 3 AA4 3 LEU A 331 THR A 333 -1 N ALA A 332 O TRP A 415 SHEET 1 AA5 4 ILE A 319 ASN A 324 0 SHEET 2 AA5 4 GLU A 414 ALA A 431 -1 O ALA A 426 N ILE A 319 SHEET 3 AA5 4 ARG A 361 VAL A 372 -1 N VAL A 367 O CYS A 425 SHEET 4 AA5 4 LEU A 381 ALA A 386 -1 O ARG A 383 N VAL A 368 LINK OD2 ASP A 13 MN MN A 502 1555 1555 2.15 LINK OD1 ASP A 13 MN MN A 503 1555 1555 2.10 LINK O MET A 14 MN MN A 503 1555 1555 2.16 LINK OD1 ASP A 115 MN MN A 502 1555 1555 2.10 LINK OD2 ASP A 115 MN MN A 503 1555 1555 2.05 LINK OE1 GLU A 116 MN MN A 502 1555 1555 2.23 LINK O1A XG4 A 501 MN MN A 502 1555 1555 2.14 LINK O1A XG4 A 501 MN MN A 503 1555 1555 2.32 LINK O1B XG4 A 501 MN MN A 503 1555 1555 2.22 LINK O2G XG4 A 501 MN MN A 503 1555 1555 2.11 LINK MN MN A 502 O HOH A 675 1555 1555 2.31 LINK MN MN A 502 O HOH A 686 1555 1555 2.39 CISPEP 1 LEU A 150 PRO A 151 0 3.15 CISPEP 2 LYS A 231 PRO A 232 0 1.71 CISPEP 3 SER A 416 PRO A 417 0 -6.11 CRYST1 98.380 98.380 82.063 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010165 0.005869 0.000000 0.00000 SCALE2 0.000000 0.011737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012186 0.00000 TER 3419 SER A 432 TER 3638 DT T 13 TER 3800 C P 9 HETATM 3801 N1 XG4 A 501 -23.319 50.843 5.682 1.00 19.72 N HETATM 3802 C2 XG4 A 501 -22.232 50.726 4.859 1.00 20.98 C HETATM 3803 N2 XG4 A 501 -21.850 51.850 4.250 1.00 21.85 N HETATM 3804 N3 XG4 A 501 -21.543 49.612 4.615 1.00 17.34 N HETATM 3805 C4 XG4 A 501 -21.993 48.551 5.268 1.00 17.29 C HETATM 3806 C5 XG4 A 501 -23.058 48.517 6.107 1.00 19.44 C HETATM 3807 C6 XG4 A 501 -23.745 49.740 6.309 1.00 22.93 C HETATM 3808 O6 XG4 A 501 -24.733 49.832 7.037 1.00 22.66 O HETATM 3809 N7 XG4 A 501 -23.226 47.246 6.637 1.00 17.58 N HETATM 3810 C8 XG4 A 501 -22.239 46.547 6.106 1.00 18.91 C HETATM 3811 N9 XG4 A 501 -21.449 47.289 5.264 1.00 19.01 N HETATM 3812 PA XG4 A 501 -21.514 41.882 5.637 1.00 16.06 P HETATM 3813 PB XG4 A 501 -18.923 41.505 7.091 1.00 15.60 P HETATM 3814 PG XG4 A 501 -19.314 38.886 8.181 1.00 16.46 P HETATM 3815 C1' XG4 A 501 -20.222 46.868 4.547 1.00 16.62 C HETATM 3816 O1A XG4 A 501 -21.303 40.707 4.801 1.00 15.60 O HETATM 3817 O1B XG4 A 501 -18.364 41.020 5.830 1.00 15.58 O HETATM 3818 O1G XG4 A 501 -20.284 38.727 9.371 1.00 17.13 O HETATM 3819 C2' XG4 A 501 -19.056 46.525 5.470 1.00 15.27 C HETATM 3820 O2A XG4 A 501 -22.993 41.953 6.175 1.00 18.25 O1- HETATM 3821 O2B XG4 A 501 -18.187 42.745 7.662 1.00 15.41 O1- HETATM 3822 O2G XG4 A 501 -19.939 38.725 6.786 1.00 13.18 O1- HETATM 3823 C3' XG4 A 501 -19.038 44.998 5.481 1.00 15.10 C HETATM 3824 O3' XG4 A 501 -17.709 44.508 5.681 1.00 13.47 O HETATM 3825 N3A XG4 A 501 -20.505 41.928 6.940 1.00 17.12 N HETATM 3826 O3B XG4 A 501 -18.835 40.406 8.197 1.00 15.66 O HETATM 3827 O3G XG4 A 501 -18.041 38.100 8.333 1.00 17.00 O1- HETATM 3828 C4' XG4 A 501 -19.545 44.666 4.081 1.00 16.64 C HETATM 3829 O4' XG4 A 501 -20.518 45.692 3.792 1.00 16.56 O HETATM 3830 C5' XG4 A 501 -20.183 43.307 3.912 1.00 14.84 C HETATM 3831 O5' XG4 A 501 -21.321 43.204 4.790 1.00 18.32 O HETATM 3832 MN MN A 502 -22.395 40.025 3.088 1.00 15.59 MN HETATM 3833 MN MN A 503 -19.427 39.343 4.836 1.00 15.67 MN HETATM 3834 O HOH A 601 -38.433 16.340 0.725 1.00 25.35 O HETATM 3835 O HOH A 602 -18.973 69.174 -15.583 1.00 41.80 O HETATM 3836 O HOH A 603 -28.870 18.085 -6.451 1.00 33.88 O HETATM 3837 O HOH A 604 -30.357 28.503 -10.270 1.00 20.93 O HETATM 3838 O HOH A 605 -15.371 56.446 -22.227 1.00 39.01 O HETATM 3839 O HOH A 606 -14.122 57.859 -13.664 1.00 29.13 O HETATM 3840 O HOH A 607 -21.790 40.443 10.354 1.00 25.04 O HETATM 3841 O HOH A 608 -6.964 40.480 -7.334 1.00 30.78 O HETATM 3842 O HOH A 609 -46.938 25.204 16.244 1.00 26.92 O HETATM 3843 O HOH A 610 -27.076 58.133 3.290 1.00 27.19 O HETATM 3844 O HOH A 611 -26.823 31.684 9.125 1.00 27.40 O HETATM 3845 O HOH A 612 -19.869 18.901 12.790 1.00 27.72 O HETATM 3846 O HOH A 613 -5.100 38.674 -7.755 1.00 23.58 O HETATM 3847 O HOH A 614 -20.906 24.137 14.103 1.00 31.06 O HETATM 3848 O HOH A 615 -33.036 29.510 -4.686 1.00 21.17 O HETATM 3849 O HOH A 616 -18.222 43.009 10.241 1.00 18.94 O HETATM 3850 O HOH A 617 -19.166 43.331 -9.828 1.00 28.16 O HETATM 3851 O HOH A 618 -56.711 25.137 3.833 1.00 28.69 O HETATM 3852 O HOH A 619 -17.993 52.627 -11.184 1.00 31.59 O HETATM 3853 O HOH A 620 -39.320 21.291 7.686 1.00 27.23 O HETATM 3854 O HOH A 621 -18.688 43.624 -7.159 1.00 27.90 O HETATM 3855 O HOH A 622 -5.187 46.179 19.303 1.00 27.43 O HETATM 3856 O HOH A 623 -12.741 53.852 -0.524 1.00 22.47 O HETATM 3857 O HOH A 624 -0.778 33.988 -2.860 1.00 21.71 O HETATM 3858 O HOH A 625 -22.803 52.924 20.050 1.00 25.33 O HETATM 3859 O HOH A 626 -10.619 25.587 0.849 1.00 21.68 O HETATM 3860 O HOH A 627 -46.968 24.569 5.202 1.00 23.61 O HETATM 3861 O HOH A 628 -33.416 16.759 9.907 1.00 19.62 O HETATM 3862 O HOH A 629 -11.729 52.781 26.538 1.00 29.50 O HETATM 3863 O HOH A 630 -38.944 21.346 11.633 1.00 21.24 O HETATM 3864 O HOH A 631 -39.060 39.409 11.457 1.00 27.38 O HETATM 3865 O HOH A 632 -26.168 46.247 -17.120 1.00 31.84 O HETATM 3866 O HOH A 633 -22.524 44.129 22.152 1.00 27.86 O HETATM 3867 O HOH A 634 -27.669 37.277 0.000 1.00 26.18 O HETATM 3868 O HOH A 635 -5.551 50.024 6.083 1.00 24.35 O HETATM 3869 O HOH A 636 -22.289 25.144 -12.728 1.00 24.49 O HETATM 3870 O HOH A 637 -9.229 48.035 -3.545 1.00 22.34 O HETATM 3871 O HOH A 638 -6.384 45.917 0.476 1.00 19.44 O HETATM 3872 O HOH A 639 -29.766 16.788 -0.028 1.00 19.33 O HETATM 3873 O HOH A 640 -22.033 53.518 -17.409 1.00 23.80 O HETATM 3874 O HOH A 641 -44.066 21.654 12.395 1.00 25.76 O HETATM 3875 O HOH A 642 -26.351 18.834 6.336 1.00 20.32 O HETATM 3876 O HOH A 643 -9.813 39.680 9.844 1.00 23.24 O HETATM 3877 O HOH A 644 -53.969 24.547 0.397 1.00 28.56 O HETATM 3878 O HOH A 645 -29.104 47.569 -23.934 1.00 32.97 O HETATM 3879 O HOH A 646 -4.553 51.765 8.209 1.00 31.02 O HETATM 3880 O HOH A 647 -11.475 20.564 -2.572 1.00 32.31 O HETATM 3881 O HOH A 648 -39.947 28.702 -1.300 1.00 25.61 O HETATM 3882 O HOH A 649 -29.385 20.946 12.841 1.00 29.71 O HETATM 3883 O HOH A 650 -39.753 40.393 6.857 1.00 24.97 O HETATM 3884 O HOH A 651 -36.214 17.291 4.294 1.00 26.67 O HETATM 3885 O HOH A 652 -30.216 14.604 2.629 1.00 22.26 O HETATM 3886 O HOH A 653 -56.214 31.305 0.492 1.00 25.53 O HETATM 3887 O HOH A 654 -11.650 35.072 8.157 1.00 17.47 O HETATM 3888 O HOH A 655 -47.587 37.561 -1.605 1.00 25.40 O HETATM 3889 O HOH A 656 -10.768 45.714 -8.960 1.00 27.77 O HETATM 3890 O HOH A 657 -16.889 61.088 -2.984 1.00 31.71 O HETATM 3891 O HOH A 658 -21.528 54.400 9.531 1.00 28.62 O HETATM 3892 O HOH A 659 -27.045 40.491 -16.216 1.00 26.91 O HETATM 3893 O HOH A 660 -17.033 53.536 -6.038 1.00 24.53 O HETATM 3894 O HOH A 661 -38.944 33.416 16.663 1.00 25.48 O HETATM 3895 O HOH A 662 -20.094 28.388 7.243 1.00 18.35 O HETATM 3896 O HOH A 663 -10.441 38.706 20.923 1.00 26.07 O HETATM 3897 O HOH A 664 -27.365 63.966 -17.921 1.00 36.73 O HETATM 3898 O HOH A 665 -30.001 19.160 10.773 1.00 20.07 O HETATM 3899 O HOH A 666 -8.060 26.560 -5.951 1.00 23.73 O HETATM 3900 O HOH A 667 0.231 47.068 1.739 1.00 17.93 O HETATM 3901 O HOH A 668 -27.849 16.290 8.858 1.00 26.87 O HETATM 3902 O HOH A 669 -24.999 34.078 6.113 1.00 32.31 O HETATM 3903 O HOH A 670 -44.013 32.277 -4.584 1.00 32.06 O HETATM 3904 O HOH A 671 -9.089 39.067 -9.004 1.00 25.36 O HETATM 3905 O HOH A 672 -25.069 72.330 -8.137 1.00 31.35 O HETATM 3906 O HOH A 673 -14.610 56.095 24.657 1.00 27.94 O HETATM 3907 O HOH A 674 -23.365 35.493 5.127 1.00 29.21 O HETATM 3908 O HOH A 675 -23.469 42.055 2.808 1.00 18.70 O HETATM 3909 O HOH A 676 -26.451 10.283 1.728 1.00 34.60 O HETATM 3910 O HOH A 677 -22.668 38.016 6.479 1.00 22.14 O HETATM 3911 O HOH A 678 -11.644 53.623 2.247 1.00 19.19 O HETATM 3912 O HOH A 679 -11.071 32.663 0.859 1.00 26.58 O HETATM 3913 O HOH A 680 -11.223 38.665 11.923 1.00 20.77 O HETATM 3914 O HOH A 681 -35.028 23.867 -3.374 1.00 18.59 O HETATM 3915 O HOH A 682 -31.754 32.334 4.601 1.00 23.99 O HETATM 3916 O HOH A 683 -11.192 17.355 6.397 1.00 27.96 O HETATM 3917 O HOH A 684 -31.216 48.236 -21.816 1.00 28.85 O HETATM 3918 O HOH A 685 -21.596 43.162 13.765 1.00 23.37 O HETATM 3919 O HOH A 686 -23.941 39.460 4.817 1.00 18.84 O HETATM 3920 O HOH A 687 -40.219 39.881 2.520 1.00 25.34 O HETATM 3921 O HOH A 688 -19.159 18.435 10.222 1.00 19.67 O HETATM 3922 O HOH A 689 -19.107 52.287 -8.684 1.00 29.33 O HETATM 3923 O HOH A 690 -7.187 47.253 -2.136 1.00 25.24 O HETATM 3924 O HOH A 691 -19.455 60.049 12.941 1.00 28.00 O HETATM 3925 O HOH A 692 -51.639 22.707 0.904 1.00 26.91 O HETATM 3926 O HOH A 693 -21.074 44.333 8.772 1.00 22.06 O HETATM 3927 O HOH A 694 -34.443 24.201 -6.359 1.00 31.61 O HETATM 3928 O HOH A 695 -25.210 25.205 -13.250 1.00 27.89 O HETATM 3929 O HOH A 696 -4.998 44.079 -5.502 1.00 31.44 O HETATM 3930 O HOH A 697 -41.173 21.700 13.348 1.00 24.43 O HETATM 3931 O HOH A 698 -20.805 42.929 11.059 1.00 22.61 O HETATM 3932 O HOH A 699 -40.169 19.875 9.835 1.00 28.28 O HETATM 3933 O HOH A 700 -20.299 49.947 -9.064 1.00 26.19 O HETATM 3934 O HOH A 701 -18.946 46.197 -10.667 1.00 27.69 O HETATM 3935 O HOH A 702 -11.440 36.142 11.033 1.00 28.22 O HETATM 3936 O HOH T 101 -22.794 50.701 -7.650 1.00 37.77 O HETATM 3937 O HOH T 102 -19.187 55.485 -2.444 1.00 23.96 O HETATM 3938 O HOH T 103 -21.999 59.584 2.032 1.00 26.94 O HETATM 3939 O HOH T 104 -23.238 61.961 9.870 1.00 37.27 O HETATM 3940 O HOH P 101 -23.324 44.731 2.989 1.00 33.50 O HETATM 3941 O HOH P 102 -33.206 37.543 7.709 1.00 25.66 O CONECT 114 3833 CONECT 115 3832 CONECT 119 3833 CONECT 961 3832 CONECT 962 3833 CONECT 970 3832 CONECT 3801 3802 3807 CONECT 3802 3801 3803 3804 CONECT 3803 3802 CONECT 3804 3802 3805 CONECT 3805 3804 3806 3811 CONECT 3806 3805 3807 3809 CONECT 3807 3801 3806 3808 CONECT 3808 3807 CONECT 3809 3806 3810 CONECT 3810 3809 3811 CONECT 3811 3805 3810 3815 CONECT 3812 3816 3820 3825 3831 CONECT 3813 3817 3821 3825 3826 CONECT 3814 3818 3822 3826 3827 CONECT 3815 3811 3819 3829 CONECT 3816 3812 3832 3833 CONECT 3817 3813 3833 CONECT 3818 3814 CONECT 3819 3815 3823 CONECT 3820 3812 CONECT 3821 3813 CONECT 3822 3814 3833 CONECT 3823 3819 3824 3828 CONECT 3824 3823 CONECT 3825 3812 3813 CONECT 3826 3813 3814 CONECT 3827 3814 CONECT 3828 3823 3829 3830 CONECT 3829 3815 3828 CONECT 3830 3828 3831 CONECT 3831 3812 3830 CONECT 3832 115 961 970 3816 CONECT 3832 3908 3919 CONECT 3833 114 119 962 3816 CONECT 3833 3817 3822 CONECT 3908 3832 CONECT 3919 3832 MASTER 315 0 3 21 18 0 0 6 3829 3 43 36 END