HEADER IMMUNOSUPPRESSANT/INHIBITOR 28-AUG-22 8EA8 TITLE NKG2D COMPLEXED WITH INHIBITOR 4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY K MEMBER 1,NK COMPND 5 CELL RECEPTOR D,NKG2-D-ACTIVATING NK RECEPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLRK1, D12S2489E, NKG2D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NKG2D, IMMUNE SYSTEM, IMMUNOSUPPRESSANT, IMMUNOSUPPRESSANT-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.A.THOMPSON,J.C.GRANT,N.K.KARPOWICH,S.SHARMA REVDAT 4 06-NOV-24 8EA8 1 REMARK REVDAT 3 25-OCT-23 8EA8 1 REMARK REVDAT 2 10-MAY-23 8EA8 1 JRNL REVDAT 1 03-MAY-23 8EA8 0 JRNL AUTH A.A.THOMPSON,M.B.HARBUT,P.P.KUNG,N.K.KARPOWICH,J.D.BRANSON, JRNL AUTH 2 J.C.GRANT,D.HAGAN,H.A.PASCUAL,G.BAI,R.B.ZAVAREH,H.R.COATE, JRNL AUTH 3 B.C.COLLINS,M.COTE,C.F.GELIN,K.L.DAMM-GANAMET,H.GHOLAMI, JRNL AUTH 4 A.R.HUFF,L.LIMON,K.J.LUMB,P.A.MAK,K.M.NAKAFUKU,E.V.PRICE, JRNL AUTH 5 A.Y.SHIH,M.TOOTOONCHI,N.A.VELLORE,J.WANG,N.WEI,J.ZIFF, JRNL AUTH 6 S.B.BERGER,J.P.EDWARDS,A.GARDET,S.SUN,J.E.TOWNE,J.D.VENABLE, JRNL AUTH 7 Z.SHI,H.VENKATESAN,M.L.RIVES,S.SHARMA,B.T.SHIREMAN,S.J.ALLEN JRNL TITL IDENTIFICATION OF SMALL-MOLECULE PROTEIN-PROTEIN INTERACTION JRNL TITL 2 INHIBITORS FOR NKG2D. JRNL REF PROC.NATL.ACAD.SCI.USA V. 120 42120 2023 JRNL REFN ESSN 1091-6490 JRNL PMID 37098070 JRNL DOI 10.1073/PNAS.2216342120 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 24440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2500 - 3.5400 1.00 3067 175 0.1653 0.1944 REMARK 3 2 3.5400 - 2.8100 0.99 2999 158 0.1706 0.1993 REMARK 3 3 2.8100 - 2.4500 0.99 2955 169 0.1626 0.2077 REMARK 3 4 2.4500 - 2.2300 0.98 2951 137 0.1588 0.1965 REMARK 3 5 2.2300 - 2.0700 0.98 2956 149 0.1495 0.1801 REMARK 3 6 2.0700 - 1.9500 0.97 2927 133 0.1490 0.2052 REMARK 3 7 1.9500 - 1.8500 0.97 2907 137 0.1506 0.2045 REMARK 3 8 1.8500 - 1.7700 0.85 2494 126 0.1697 0.2546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2128 7.9596 6.0043 REMARK 3 T TENSOR REMARK 3 T11: 0.2205 T22: 0.1627 REMARK 3 T33: 0.1999 T12: 0.0117 REMARK 3 T13: 0.0150 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 3.2909 L22: 1.1488 REMARK 3 L33: 0.1856 L12: 0.9168 REMARK 3 L13: -0.4667 L23: -0.1509 REMARK 3 S TENSOR REMARK 3 S11: -0.0876 S12: 0.1707 S13: -0.3524 REMARK 3 S21: -0.1112 S22: -0.0556 S23: -0.1511 REMARK 3 S31: 0.2606 S32: -0.2007 S33: 0.0917 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2160 15.7358 10.5101 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.1364 REMARK 3 T33: 0.1050 T12: -0.0052 REMARK 3 T13: 0.0108 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.7740 L22: 1.7214 REMARK 3 L33: 2.8688 L12: 0.7076 REMARK 3 L13: 0.4151 L23: 1.2080 REMARK 3 S TENSOR REMARK 3 S11: -0.0915 S12: -0.0026 S13: -0.0307 REMARK 3 S21: -0.0481 S22: -0.0342 S23: -0.0758 REMARK 3 S31: 0.1577 S32: 0.1148 S33: 0.1365 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9942 23.1600 19.0250 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.2733 REMARK 3 T33: 0.2344 T12: -0.0292 REMARK 3 T13: -0.0393 T23: 0.0787 REMARK 3 L TENSOR REMARK 3 L11: 1.2856 L22: 1.7939 REMARK 3 L33: 2.4485 L12: 0.6927 REMARK 3 L13: -0.3264 L23: 0.3867 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: -0.3007 S13: -0.2939 REMARK 3 S21: 0.2208 S22: -0.3178 S23: -0.4699 REMARK 3 S31: 0.2426 S32: 0.3258 S33: -0.0051 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4823 29.2210 8.8146 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.0937 REMARK 3 T33: 0.1190 T12: 0.0071 REMARK 3 T13: 0.0145 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.6015 L22: 0.9743 REMARK 3 L33: 2.4813 L12: 0.3422 REMARK 3 L13: -0.1405 L23: -0.4285 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: 0.0305 S13: 0.0996 REMARK 3 S21: -0.1063 S22: -0.0558 S23: -0.0242 REMARK 3 S31: -0.2345 S32: 0.0410 S33: -0.0179 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 180 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6842 39.6890 17.7628 REMARK 3 T TENSOR REMARK 3 T11: 0.2704 T22: 0.1858 REMARK 3 T33: 0.2275 T12: -0.0323 REMARK 3 T13: 0.0779 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 3.5914 L22: 0.8920 REMARK 3 L33: 2.3048 L12: -0.7811 REMARK 3 L13: 1.0157 L23: 0.3647 REMARK 3 S TENSOR REMARK 3 S11: 0.1642 S12: -0.6839 S13: 0.2526 REMARK 3 S21: 0.1564 S22: 0.0029 S23: 0.0210 REMARK 3 S31: -0.4386 S32: -0.0421 S33: -0.0759 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2731 29.0333 16.8708 REMARK 3 T TENSOR REMARK 3 T11: 0.1116 T22: 0.1383 REMARK 3 T33: 0.1329 T12: -0.0267 REMARK 3 T13: -0.0004 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.5585 L22: 2.1112 REMARK 3 L33: 1.0302 L12: 0.2255 REMARK 3 L13: 0.3322 L23: -0.2922 REMARK 3 S TENSOR REMARK 3 S11: 0.0835 S12: -0.1070 S13: 0.0650 REMARK 3 S21: 0.0339 S22: -0.1325 S23: -0.0987 REMARK 3 S31: -0.0818 S32: 0.1202 S33: 0.0493 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5057 8.5338 8.7734 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.1216 REMARK 3 T33: 0.1204 T12: 0.0002 REMARK 3 T13: 0.0203 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.6320 L22: 0.9055 REMARK 3 L33: 1.3058 L12: -0.1754 REMARK 3 L13: -0.9053 L23: 0.3373 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: 0.1779 S13: -0.0052 REMARK 3 S21: -0.1762 S22: -0.0144 S23: -0.1718 REMARK 3 S31: 0.2085 S32: 0.0159 S33: 0.0381 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5843 11.1933 13.8473 REMARK 3 T TENSOR REMARK 3 T11: 0.1236 T22: 0.2206 REMARK 3 T33: 0.1389 T12: -0.0244 REMARK 3 T13: -0.0523 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 2.0359 L22: 1.3876 REMARK 3 L33: 1.9971 L12: -0.5597 REMARK 3 L13: -1.0414 L23: 1.2155 REMARK 3 S TENSOR REMARK 3 S11: 0.0820 S12: 0.3969 S13: 0.2669 REMARK 3 S21: -0.3461 S22: 0.0309 S23: 0.0412 REMARK 3 S31: -0.0886 S32: -0.2164 S33: 0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 131 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4274 5.0992 21.6364 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.0821 REMARK 3 T33: 0.0712 T12: -0.0176 REMARK 3 T13: -0.0031 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.1472 L22: 1.9438 REMARK 3 L33: 1.3721 L12: -0.6654 REMARK 3 L13: 0.1533 L23: -0.0614 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: -0.0891 S13: -0.1372 REMARK 3 S21: 0.0644 S22: 0.0177 S23: 0.0069 REMARK 3 S31: 0.1947 S32: -0.0360 S33: -0.0272 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7330 2.5872 28.1023 REMARK 3 T TENSOR REMARK 3 T11: 0.1513 T22: 0.1168 REMARK 3 T33: 0.1342 T12: -0.0307 REMARK 3 T13: -0.0089 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 1.0526 L22: 1.2111 REMARK 3 L33: 0.9640 L12: -0.0154 REMARK 3 L13: -0.0984 L23: 0.1505 REMARK 3 S TENSOR REMARK 3 S11: -0.1004 S12: -0.0981 S13: -0.0911 REMARK 3 S21: -0.0386 S22: 0.0852 S23: 0.0517 REMARK 3 S31: 0.1443 S32: -0.0657 S33: -0.0197 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8589 10.0915 22.7510 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.1061 REMARK 3 T33: 0.1006 T12: -0.0146 REMARK 3 T13: -0.0163 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.2445 L22: 0.7670 REMARK 3 L33: 1.2179 L12: -0.0057 REMARK 3 L13: -0.1370 L23: -0.5249 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: -0.0051 S13: -0.0156 REMARK 3 S21: 0.0106 S22: 0.0309 S23: 0.0422 REMARK 3 S31: 0.0786 S32: -0.1033 S33: -0.0200 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24445 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 59.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1MPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 - 0.22 M NANO3, 20- 31 % (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.04500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.83750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.04500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.83750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 88 REMARK 465 GLY B 89 REMARK 465 PRO B 90 REMARK 465 THR B 162 REMARK 465 THR B 215 REMARK 465 VAL B 216 REMARK 465 MET A 88 REMARK 465 GLY A 89 REMARK 465 PRO A 90 REMARK 465 LEU A 91 REMARK 465 THR A 92 REMARK 465 THR A 162 REMARK 465 ASN A 163 REMARK 465 THR A 215 REMARK 465 VAL A 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 91 CG CD1 CD2 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 GLU B 169 CD OE1 OE2 REMARK 470 ARG B 214 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 186 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 108 -0.80 74.26 REMARK 500 LYS B 150 -167.77 -101.69 REMARK 500 SER B 151 -155.12 58.26 REMARK 500 SER A 151 -173.86 70.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 8EA8 B 90 216 UNP P26718 NKG2D_HUMAN 90 216 DBREF 8EA8 A 90 216 UNP P26718 NKG2D_HUMAN 90 216 SEQADV 8EA8 MET B 88 UNP P26718 INITIATING METHIONINE SEQADV 8EA8 GLY B 89 UNP P26718 EXPRESSION TAG SEQADV 8EA8 GLU B 117 UNP P26718 SER 117 ENGINEERED MUTATION SEQADV 8EA8 SER B 173 UNP P26718 ILE 173 ENGINEERED MUTATION SEQADV 8EA8 MET A 88 UNP P26718 INITIATING METHIONINE SEQADV 8EA8 GLY A 89 UNP P26718 EXPRESSION TAG SEQADV 8EA8 GLU A 117 UNP P26718 SER 117 ENGINEERED MUTATION SEQADV 8EA8 SER A 173 UNP P26718 ILE 173 ENGINEERED MUTATION SEQRES 1 B 129 MET GLY PRO LEU THR GLU SER TYR CYS GLY PRO CYS PRO SEQRES 2 B 129 LYS ASN TRP ILE CYS TYR LYS ASN ASN CYS TYR GLN PHE SEQRES 3 B 129 PHE ASP GLU GLU LYS ASN TRP TYR GLU SER GLN ALA SER SEQRES 4 B 129 CYS MET SER GLN ASN ALA SER LEU LEU LYS VAL TYR SER SEQRES 5 B 129 LYS GLU ASP GLN ASP LEU LEU LYS LEU VAL LYS SER TYR SEQRES 6 B 129 HIS TRP MET GLY LEU VAL HIS ILE PRO THR ASN GLY SER SEQRES 7 B 129 TRP GLN TRP GLU ASP GLY SER SER LEU SER PRO ASN LEU SEQRES 8 B 129 LEU THR ILE ILE GLU MET GLN LYS GLY ASP CYS ALA LEU SEQRES 9 B 129 TYR ALA SER SER PHE LYS GLY TYR ILE GLU ASN CYS SER SEQRES 10 B 129 THR PRO ASN THR TYR ILE CYS MET GLN ARG THR VAL SEQRES 1 A 129 MET GLY PRO LEU THR GLU SER TYR CYS GLY PRO CYS PRO SEQRES 2 A 129 LYS ASN TRP ILE CYS TYR LYS ASN ASN CYS TYR GLN PHE SEQRES 3 A 129 PHE ASP GLU GLU LYS ASN TRP TYR GLU SER GLN ALA SER SEQRES 4 A 129 CYS MET SER GLN ASN ALA SER LEU LEU LYS VAL TYR SER SEQRES 5 A 129 LYS GLU ASP GLN ASP LEU LEU LYS LEU VAL LYS SER TYR SEQRES 6 A 129 HIS TRP MET GLY LEU VAL HIS ILE PRO THR ASN GLY SER SEQRES 7 A 129 TRP GLN TRP GLU ASP GLY SER SER LEU SER PRO ASN LEU SEQRES 8 A 129 LEU THR ILE ILE GLU MET GLN LYS GLY ASP CYS ALA LEU SEQRES 9 A 129 TYR ALA SER SER PHE LYS GLY TYR ILE GLU ASN CYS SER SEQRES 10 A 129 THR PRO ASN THR TYR ILE CYS MET GLN ARG THR VAL HET PGE B 401 10 HET PGE B 402 10 HET PEG B 403 7 HET VML B 404 35 HET PGE B 405 10 HET PGE A 301 10 HET PGE A 302 10 HET PEG A 303 7 HET PGE A 304 10 HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM VML N-{(1S)-2-(DIMETHYLAMINO)-2-OXO-1-[3-(TRIFLUOROMETHYL) HETNAM 2 VML PHENYL]ETHYL}-4-[4-(TRIFLUOROMETHYL)PHENYL]PYRIDINE-3- HETNAM 3 VML CARBOXAMIDE FORMUL 3 PGE 6(C6 H14 O4) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 6 VML C24 H19 F6 N3 O2 FORMUL 12 HOH *159(H2 O) HELIX 1 AA1 ASN B 119 SER B 129 1 11 HELIX 2 AA2 GLN B 143 VAL B 149 5 7 HELIX 3 AA3 ASN A 119 GLN A 130 1 12 HELIX 4 AA4 GLN A 143 VAL A 149 5 7 SHEET 1 AA1 2 SER B 94 CYS B 99 0 SHEET 2 AA1 2 SER A 94 CYS A 99 -1 O CYS A 96 N CYS B 96 SHEET 1 AA2 5 ILE B 104 TYR B 106 0 SHEET 2 AA2 5 ASN B 109 LYS B 118 -1 O TYR B 111 N ILE B 104 SHEET 3 AA2 5 ASN B 207 GLN B 213 -1 O TYR B 209 N PHE B 114 SHEET 4 AA2 5 HIS B 153 ILE B 160 1 N TRP B 154 O THR B 208 SHEET 5 AA2 5 SER B 165 TRP B 168 -1 O GLN B 167 N VAL B 158 SHEET 1 AA3 6 ALA B 132 LEU B 134 0 SHEET 2 AA3 6 ASN B 207 GLN B 213 -1 O MET B 212 N SER B 133 SHEET 3 AA3 6 HIS B 153 ILE B 160 1 N TRP B 154 O THR B 208 SHEET 4 AA3 6 CYS B 189 ALA B 193 -1 O TYR B 192 N HIS B 153 SHEET 5 AA3 6 LYS B 197 GLU B 201 -1 O GLU B 201 N CYS B 189 SHEET 6 AA3 6 THR B 180 GLU B 183 1 N ILE B 182 O ILE B 200 SHEET 1 AA4 4 ILE A 104 TYR A 106 0 SHEET 2 AA4 4 ASN A 109 LYS A 118 -1 O ASN A 109 N TYR A 106 SHEET 3 AA4 4 ASN A 207 GLN A 213 -1 O CYS A 211 N GLN A 112 SHEET 4 AA4 4 SER A 133 LEU A 134 -1 N SER A 133 O MET A 212 SHEET 1 AA5 5 TRP A 166 TRP A 168 0 SHEET 2 AA5 5 TYR A 152 HIS A 159 -1 N VAL A 158 O GLN A 167 SHEET 3 AA5 5 CYS A 189 ALA A 193 -1 O TYR A 192 N HIS A 153 SHEET 4 AA5 5 LYS A 197 GLU A 201 -1 O GLU A 201 N CYS A 189 SHEET 5 AA5 5 THR A 180 GLU A 183 1 N ILE A 182 O GLY A 198 SSBOND 1 CYS B 96 CYS B 105 1555 1555 2.04 SSBOND 2 CYS B 99 CYS B 110 1555 1555 2.03 SSBOND 3 CYS B 127 CYS B 211 1555 1555 2.03 SSBOND 4 CYS B 189 CYS B 203 1555 1555 2.03 SSBOND 5 CYS A 96 CYS A 105 1555 1555 2.05 SSBOND 6 CYS A 99 CYS A 110 1555 1555 2.04 SSBOND 7 CYS A 127 CYS A 211 1555 1555 2.05 SSBOND 8 CYS A 189 CYS A 203 1555 1555 2.05 CISPEP 1 GLY B 97 PRO B 98 0 9.43 CISPEP 2 SER B 194 SER B 195 0 2.96 CISPEP 3 GLY A 97 PRO A 98 0 6.97 CISPEP 4 SER A 194 SER A 195 0 -3.54 CRYST1 100.090 43.675 72.591 90.00 125.01 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009991 0.000000 0.006998 0.00000 SCALE2 0.000000 0.022896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016819 0.00000