HEADER LIGASE 30-AUG-22 8EB0 TITLE RNF216/E2-UB/UB TRANSTHIOLATION COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF216; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RING FINGER PROTEIN 216,RING-TYPE E3 UBIQUITIN TRANSFERASE COMPND 5 RNF216,TRIAD DOMAIN-CONTAINING PROTEIN 3,UBIQUITIN-CONJUGATING ENZYME COMPND 6 7-INTERACTING PROTEIN 1,ZINC FINGER PROTEIN INHIBITING NF-KAPPA-B; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: S719 IS PHOSPHORYLATED; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 L3; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: E2 UBIQUITIN-CONJUGATING ENZYME L3,L-UBC,UBCH7,UBIQUITIN COMPND 14 CARRIER PROTEIN L3,UBIQUITIN-CONJUGATING ENZYME E2-F1,UBIQUITIN- COMPND 15 PROTEIN LIGASE L3; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES; COMPND 18 OTHER_DETAILS: C86K FORMS AN ISOPEPTIDE BOND WITH UBIQUITIN G76 IN COMPND 19 CHAIN C.; COMPND 20 MOL_ID: 3; COMPND 21 MOLECULE: UBIQUITIN; COMPND 22 CHAIN: C, D; COMPND 23 ENGINEERED: YES; COMPND 24 OTHER_DETAILS: THE UBIQUITIN C-TERMINUS OF CHAIN C FORMS AN COMPND 25 ISOPEPTIDE BOND WITH UBCH7 C86K IN CHAIN B. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF216, TRIAD3, UBCE7IP1, ZIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBE2L3, UBCE7, UBCH7; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: UBC; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS UBIQUITIN, TRANSTHIOLATION, ZF, RBR, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.R.COTTON,X.S.WANG,B.C.LECHTENBERG REVDAT 2 25-OCT-23 8EB0 1 REMARK REVDAT 1 18-JAN-23 8EB0 0 JRNL AUTH X.S.WANG,T.R.COTTON,S.J.TREVELYAN,L.W.RICHARDSON,W.T.LEE, JRNL AUTH 2 J.SILKE,B.C.LECHTENBERG JRNL TITL THE UNIFYING CATALYTIC MECHANISM OF THE RING-BETWEEN-RING E3 JRNL TITL 2 UBIQUITIN LIGASE FAMILY. JRNL REF NAT COMMUN V. 14 168 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 36631489 JRNL DOI 10.1038/S41467-023-35871-Z REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.S.WANG,T.R.COTTON,S.J.TREVELYAN,L.W.RICHARDSON,W.T.LEE, REMARK 1 AUTH 2 J.SILKE,B.C.LECHTENBERG REMARK 1 TITL THE UNIFYING CATALYTIC MECHANISM OF THE RING-BETWEEN-RING E3 REMARK 1 TITL 2 LIGASE FAMILY REMARK 1 REF BIORXIV 2022 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2022.10.11.511834 REMARK 2 REMARK 2 RESOLUTION. 3.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 12667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.306 REMARK 3 R VALUE (WORKING SET) : 0.303 REMARK 3 FREE R VALUE : 0.339 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3700 - 6.2900 0.97 1304 145 0.2429 0.3058 REMARK 3 2 6.2800 - 4.9900 0.98 1270 141 0.3037 0.2937 REMARK 3 3 4.9900 - 4.3600 0.98 1260 140 0.2839 0.3546 REMARK 3 4 4.3600 - 3.9600 0.99 1286 143 0.3098 0.3630 REMARK 3 5 3.9600 - 3.6800 0.98 1252 140 0.3305 0.3345 REMARK 3 6 3.6800 - 3.4600 0.99 1274 140 0.3419 0.3903 REMARK 3 7 3.4600 - 3.2900 1.00 1280 143 0.3492 0.3363 REMARK 3 8 3.2900 - 3.1500 1.00 1294 143 0.3833 0.4326 REMARK 3 9 3.1500 - 3.0300 0.93 1180 132 0.4208 0.3896 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.582 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4490 REMARK 3 ANGLE : 0.486 6041 REMARK 3 CHIRALITY : 0.041 659 REMARK 3 PLANARITY : 0.005 786 REMARK 3 DIHEDRAL : 11.206 1759 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 76) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7748 36.2680 -3.5122 REMARK 3 T TENSOR REMARK 3 T11: 0.8669 T22: 0.6468 REMARK 3 T33: 0.7185 T12: 0.0559 REMARK 3 T13: -0.0780 T23: -0.0560 REMARK 3 L TENSOR REMARK 3 L11: 0.3556 L22: 0.8546 REMARK 3 L33: 0.8227 L12: 0.1707 REMARK 3 L13: 0.1056 L23: 0.8526 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: 0.1804 S13: -0.0180 REMARK 3 S21: -0.5885 S22: 0.1761 S23: 0.0748 REMARK 3 S31: -1.2919 S32: 0.3308 S33: 0.0183 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 73) REMARK 3 ORIGIN FOR THE GROUP (A): -50.1149 32.4787 27.7354 REMARK 3 T TENSOR REMARK 3 T11: 1.0407 T22: 0.8557 REMARK 3 T33: 0.8072 T12: 0.0717 REMARK 3 T13: 0.3198 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.4122 L22: 0.3043 REMARK 3 L33: 0.3204 L12: 0.1158 REMARK 3 L13: -0.3718 L23: -0.0419 REMARK 3 S TENSOR REMARK 3 S11: 0.2788 S12: -0.3729 S13: 0.3248 REMARK 3 S21: -0.1670 S22: 0.0512 S23: -0.3686 REMARK 3 S31: -0.2845 S32: -0.3585 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 512 THROUGH 772) REMARK 3 ORIGIN FOR THE GROUP (A): -31.8563 27.0236 6.7527 REMARK 3 T TENSOR REMARK 3 T11: 0.6453 T22: 0.7670 REMARK 3 T33: 0.6797 T12: 0.0058 REMARK 3 T13: 0.1359 T23: 0.0508 REMARK 3 L TENSOR REMARK 3 L11: 0.3905 L22: 2.1861 REMARK 3 L33: 1.7979 L12: 0.6296 REMARK 3 L13: 1.0443 L23: 0.6443 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: 0.0231 S13: -0.0050 REMARK 3 S21: 0.5019 S22: -0.0612 S23: -0.2009 REMARK 3 S31: -0.1580 S32: 0.0673 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1 THROUGH 146) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4919 20.2563 17.2334 REMARK 3 T TENSOR REMARK 3 T11: 1.2567 T22: 1.2130 REMARK 3 T33: 1.3091 T12: 0.1969 REMARK 3 T13: -0.3294 T23: 0.0833 REMARK 3 L TENSOR REMARK 3 L11: 0.9246 L22: 0.2185 REMARK 3 L33: 0.7160 L12: -0.2964 REMARK 3 L13: -0.7615 L23: 0.2733 REMARK 3 S TENSOR REMARK 3 S11: 0.1953 S12: -0.2072 S13: -0.7294 REMARK 3 S21: -0.1207 S22: 0.5571 S23: 0.5121 REMARK 3 S31: 0.7934 S32: 0.2943 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1000268095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOV 1, 2016 BUILT=20161205 REMARK 200 DATA SCALING SOFTWARE : AIMLESS VERSION 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12690 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.030 REMARK 200 RESOLUTION RANGE LOW (A) : 47.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.97900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: PDB ENTRIES 7M4O, 1UBQ, 4Q5E, & 7M4M, ALPHAFOLD REMARK 200 MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, PH 7.9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.27250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.18150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.27250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.18150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 508 REMARK 465 PRO A 509 REMARK 465 GLY A 510 REMARK 465 GLN A 511 REMARK 465 SER A 719 REMARK 465 PRO A 720 REMARK 465 GLY A 721 REMARK 465 ALA A 722 REMARK 465 PHE A 764 REMARK 465 LYS A 765 REMARK 465 LYS A 773 REMARK 465 PRO A 774 REMARK 465 VAL A 775 REMARK 465 GLU A 776 REMARK 465 LYS A 777 REMARK 465 VAL A 778 REMARK 465 GLN A 779 REMARK 465 ARG A 780 REMARK 465 VAL A 781 REMARK 465 GLU A 782 REMARK 465 ALA A 783 REMARK 465 LEU A 784 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 TYR B 147 REMARK 465 GLY B 148 REMARK 465 GLU B 149 REMARK 465 LYS B 150 REMARK 465 ARG B 151 REMARK 465 PRO B 152 REMARK 465 VAL B 153 REMARK 465 ASP B 154 REMARK 465 ARG D 74 REMARK 465 GLY D 75 REMARK 465 GLY D 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 86 C GLY C 76 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 526 32.36 -91.80 REMARK 500 CYS A 530 -166.01 -109.23 REMARK 500 VAL A 549 -66.16 -90.17 REMARK 500 ALA A 597 -75.66 -80.35 REMARK 500 ALA A 599 -143.44 59.52 REMARK 500 ASP A 600 61.36 -101.98 REMARK 500 SER A 609 19.14 57.60 REMARK 500 CYS A 623 107.79 -56.84 REMARK 500 CYS A 628 -83.15 -118.82 REMARK 500 ARG A 671 -50.52 -122.54 REMARK 500 LYS A 677 -72.11 -112.68 REMARK 500 SER A 728 37.01 -91.04 REMARK 500 LYS B 86 59.88 -106.68 REMARK 500 GLU C 34 -24.42 -140.79 REMARK 500 GLN C 62 -164.41 -105.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 515 SG REMARK 620 2 CYS A 518 SG 114.0 REMARK 620 3 CYS A 537 SG 116.4 105.1 REMARK 620 4 CYS A 540 SG 124.5 100.0 93.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 530 SG REMARK 620 2 HIS A 534 ND1 113.7 REMARK 620 3 CYS A 559 SG 105.2 102.7 REMARK 620 4 CYS A 564 SG 100.9 130.9 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 605 SG REMARK 620 2 CYS A 608 SG 116.7 REMARK 620 3 CYS A 623 SG 142.9 75.7 REMARK 620 4 CYS A 628 SG 117.8 86.3 96.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 633 SG REMARK 620 2 CYS A 636 SG 116.7 REMARK 620 3 HIS A 643 NE2 129.9 103.9 REMARK 620 4 CYS A 648 SG 121.5 80.4 92.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1005 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 675 SG REMARK 620 2 CYS A 678 SG 117.7 REMARK 620 3 CYS A 693 SG 119.5 97.7 REMARK 620 4 CYS A 695 SG 109.1 105.0 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1006 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 700 SG REMARK 620 2 CYS A 703 SG 100.4 REMARK 620 3 HIS A 712 NE2 108.9 90.6 REMARK 620 4 CYS A 730 SG 127.3 108.9 113.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1007 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 714 SG REMARK 620 2 HIS A 716 ND1 89.9 REMARK 620 3 CYS A 724 SG 75.6 143.0 REMARK 620 4 CYS A 727 SG 90.9 107.3 106.8 REMARK 620 N 1 2 3 DBREF 8EB0 A 510 784 UNP Q9NWF9 RN216_HUMAN 510 784 DBREF 8EB0 B 1 154 UNP P68036 UB2L3_HUMAN 1 154 DBREF 8EB0 C 1 76 UNP P0CG48 UBC_HUMAN 1 76 DBREF 8EB0 D 1 76 UNP P0CG48 UBC_HUMAN 1 76 SEQADV 8EB0 GLY A 508 UNP Q9NWF9 EXPRESSION TAG SEQADV 8EB0 PRO A 509 UNP Q9NWF9 EXPRESSION TAG SEQADV 8EB0 ALA A 688 UNP Q9NWF9 CYS 688 ENGINEERED MUTATION SEQADV 8EB0 GLY B -2 UNP P68036 EXPRESSION TAG SEQADV 8EB0 PRO B -1 UNP P68036 EXPRESSION TAG SEQADV 8EB0 GLY B 0 UNP P68036 EXPRESSION TAG SEQADV 8EB0 LYS B 86 UNP P68036 CYS 86 ENGINEERED MUTATION SEQRES 1 A 277 GLY PRO GLY GLN LEU ILE GLU CYS ARG CYS CYS TYR GLY SEQRES 2 A 277 GLU PHE PRO PHE GLU GLU LEU THR GLN CYS ALA ASP ALA SEQRES 3 A 277 HIS LEU PHE CYS LYS GLU CYS LEU ILE ARG TYR ALA GLN SEQRES 4 A 277 GLU ALA VAL PHE GLY SER GLY LYS LEU GLU LEU SER CYS SEQRES 5 A 277 MET GLU GLY SER CYS THR CYS SER PHE PRO THR SER GLU SEQRES 6 A 277 LEU GLU LYS VAL LEU PRO GLN THR ILE LEU TYR LYS TYR SEQRES 7 A 277 TYR GLU ARG LYS ALA GLU GLU GLU VAL ALA ALA ALA TYR SEQRES 8 A 277 ALA ASP GLU LEU VAL ARG CYS PRO SER CYS SER PHE PRO SEQRES 9 A 277 ALA LEU LEU ASP SER ASP VAL LYS ARG PHE SER CYS PRO SEQRES 10 A 277 ASN PRO HIS CYS ARG LYS GLU THR CYS ARG LYS CYS GLN SEQRES 11 A 277 GLY LEU TRP LYS GLU HIS ASN GLY LEU THR CYS GLU GLU SEQRES 12 A 277 LEU ALA GLU LYS ASP ASP ILE LYS TYR ARG THR SER ILE SEQRES 13 A 277 GLU GLU LYS MET THR ALA ALA ARG ILE ARG LYS CYS HIS SEQRES 14 A 277 LYS CYS GLY THR GLY LEU ILE LYS SER GLU GLY ALA ASN SEQRES 15 A 277 ARG MET SER CYS ARG CYS GLY ALA GLN MET CYS TYR LEU SEQRES 16 A 277 CYS ARG VAL SER ILE ASN GLY TYR ASP HIS PHE CYS GLN SEQRES 17 A 277 HIS PRO ARG SER PRO GLY ALA PRO CYS GLN GLU CYS SER SEQRES 18 A 277 ARG CYS SER LEU TRP THR ASP PRO THR GLU ASP ASP GLU SEQRES 19 A 277 LYS LEU ILE GLU GLU ILE GLN LYS GLU ALA GLU GLU GLU SEQRES 20 A 277 GLN LYS ARG LYS ASN GLY GLU ASN THR PHE LYS ARG ILE SEQRES 21 A 277 GLY PRO PRO LEU GLU LYS PRO VAL GLU LYS VAL GLN ARG SEQRES 22 A 277 VAL GLU ALA LEU SEQRES 1 B 157 GLY PRO GLY MET ALA ALA SER ARG ARG LEU MET LYS GLU SEQRES 2 B 157 LEU GLU GLU ILE ARG LYS CYS GLY MET LYS ASN PHE ARG SEQRES 3 B 157 ASN ILE GLN VAL ASP GLU ALA ASN LEU LEU THR TRP GLN SEQRES 4 B 157 GLY LEU ILE VAL PRO ASP ASN PRO PRO TYR ASP LYS GLY SEQRES 5 B 157 ALA PHE ARG ILE GLU ILE ASN PHE PRO ALA GLU TYR PRO SEQRES 6 B 157 PHE LYS PRO PRO LYS ILE THR PHE LYS THR LYS ILE TYR SEQRES 7 B 157 HIS PRO ASN ILE ASP GLU LYS GLY GLN VAL LYS LEU PRO SEQRES 8 B 157 VAL ILE SER ALA GLU ASN TRP LYS PRO ALA THR LYS THR SEQRES 9 B 157 ASP GLN VAL ILE GLN SER LEU ILE ALA LEU VAL ASN ASP SEQRES 10 B 157 PRO GLN PRO GLU HIS PRO LEU ARG ALA ASP LEU ALA GLU SEQRES 11 B 157 GLU TYR SER LYS ASP ARG LYS LYS PHE CYS LYS ASN ALA SEQRES 12 B 157 GLU GLU PHE THR LYS LYS TYR GLY GLU LYS ARG PRO VAL SEQRES 13 B 157 ASP SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 D 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET ZN A1001 1 HET ZN A1002 1 HET ZN A1003 1 HET ZN A1004 1 HET ZN A1005 1 HET ZN A1006 1 HET ZN A1007 1 HET SO4 A1008 5 HET SO4 D 101 5 HET SO4 D 102 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 5 ZN 7(ZN 2+) FORMUL 12 SO4 3(O4 S 2-) HELIX 1 AA1 PRO A 523 GLU A 525 5 3 HELIX 2 AA2 LYS A 538 PHE A 550 1 13 HELIX 3 AA3 PRO A 569 LEU A 577 1 9 HELIX 4 AA4 PRO A 578 ALA A 599 1 22 HELIX 5 AA5 LEU A 639 ASN A 644 1 6 HELIX 6 AA6 THR A 647 LYS A 654 1 8 HELIX 7 AA7 ASP A 655 ALA A 670 1 16 HELIX 8 AA8 GLY A 709 PHE A 713 5 5 HELIX 9 AA9 PRO A 736 LYS A 758 1 23 HELIX 10 AB1 ALA B 2 CYS B 17 1 16 HELIX 11 AB2 LEU B 87 SER B 91 5 5 HELIX 12 AB3 LYS B 100 ASP B 114 1 15 HELIX 13 AB4 ARG B 122 ASP B 132 1 11 HELIX 14 AB5 ASP B 132 LYS B 146 1 15 HELIX 15 AB6 THR C 22 GLY C 35 1 14 HELIX 16 AB7 PRO C 37 GLN C 41 5 5 HELIX 17 AB8 THR C 55 ASN C 60 5 6 HELIX 18 AB9 THR D 22 GLY D 35 1 14 HELIX 19 AC1 PRO D 37 ASP D 39 5 3 SHEET 1 AA1 2 ILE A 513 GLU A 514 0 SHEET 2 AA1 2 GLU A 521 PHE A 522 -1 O PHE A 522 N ILE A 513 SHEET 1 AA2 2 LEU A 527 GLN A 529 0 SHEET 2 AA2 2 LEU A 535 CYS A 537 -1 O PHE A 536 N THR A 528 SHEET 1 AA3 2 LEU A 602 ARG A 604 0 SHEET 2 AA3 2 PRO A 611 LEU A 613 -1 O ALA A 612 N VAL A 603 SHEET 1 AA4 2 ARG A 620 SER A 622 0 SHEET 2 AA4 2 GLU A 631 CYS A 633 -1 O THR A 632 N PHE A 621 SHEET 1 AA5 3 ARG A 673 LYS A 674 0 SHEET 2 AA5 3 GLY A 681 LYS A 684 -1 O LEU A 682 N ARG A 673 SHEET 3 AA5 3 LEU C 71 LEU C 73 1 O LEU C 71 N ILE A 683 SHEET 1 AA6 2 ARG A 690 SER A 692 0 SHEET 2 AA6 2 GLN A 698 CYS A 700 -1 O MET A 699 N MET A 691 SHEET 1 AA7 4 PHE B 22 VAL B 27 0 SHEET 2 AA7 4 THR B 34 ILE B 39 -1 O LEU B 38 N ARG B 23 SHEET 3 AA7 4 PHE B 51 ASN B 56 -1 O PHE B 51 N ILE B 39 SHEET 4 AA7 4 LYS B 67 PHE B 70 -1 O LYS B 67 N ASN B 56 SHEET 1 AA8 4 THR C 12 GLU C 16 0 SHEET 2 AA8 4 GLN C 2 LYS C 6 -1 N ILE C 3 O LEU C 15 SHEET 3 AA8 4 THR C 66 LEU C 69 1 O LEU C 67 N PHE C 4 SHEET 4 AA8 4 LEU C 43 ILE C 44 -1 N ILE C 44 O HIS C 68 SHEET 1 AA9 5 THR D 12 GLU D 16 0 SHEET 2 AA9 5 GLN D 2 LYS D 6 -1 N ILE D 3 O LEU D 15 SHEET 3 AA9 5 THR D 66 LEU D 71 1 O LEU D 69 N LYS D 6 SHEET 4 AA9 5 GLN D 41 PHE D 45 -1 N ILE D 44 O HIS D 68 SHEET 5 AA9 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 LINK SG CYS A 515 ZN ZN A1001 1555 1555 2.33 LINK SG CYS A 518 ZN ZN A1001 1555 1555 2.28 LINK SG CYS A 530 ZN ZN A1002 1555 1555 2.30 LINK ND1 HIS A 534 ZN ZN A1002 1555 1555 2.08 LINK SG CYS A 537 ZN ZN A1001 1555 1555 2.28 LINK SG CYS A 540 ZN ZN A1001 1555 1555 2.28 LINK SG CYS A 559 ZN ZN A1002 1555 1555 2.29 LINK SG CYS A 564 ZN ZN A1002 1555 1555 2.30 LINK SG CYS A 605 ZN ZN A1003 1555 1555 2.24 LINK SG CYS A 608 ZN ZN A1003 1555 1555 2.31 LINK SG CYS A 623 ZN ZN A1003 1555 1555 2.24 LINK SG CYS A 628 ZN ZN A1003 1555 1555 2.26 LINK SG CYS A 633 ZN ZN A1004 1555 1555 2.32 LINK SG CYS A 636 ZN ZN A1004 1555 1555 2.32 LINK NE2 HIS A 643 ZN ZN A1004 1555 1555 2.07 LINK SG CYS A 648 ZN ZN A1004 1555 1555 2.33 LINK SG CYS A 675 ZN ZN A1005 1555 1555 2.32 LINK SG CYS A 678 ZN ZN A1005 1555 1555 2.26 LINK SG CYS A 693 ZN ZN A1005 1555 1555 2.28 LINK SG CYS A 695 ZN ZN A1005 1555 1555 2.25 LINK SG CYS A 700 ZN ZN A1006 1555 1555 2.31 LINK SG CYS A 703 ZN ZN A1006 1555 1555 2.32 LINK NE2 HIS A 712 ZN ZN A1006 1555 1555 2.14 LINK SG CYS A 714 ZN ZN A1007 1555 1555 2.32 LINK ND1 HIS A 716 ZN ZN A1007 1555 1555 2.13 LINK SG CYS A 724 ZN ZN A1007 1555 1555 2.26 LINK SG CYS A 727 ZN ZN A1007 1555 1555 2.27 LINK SG CYS A 730 ZN ZN A1006 1555 1555 2.28 CISPEP 1 PRO B 44 PRO B 45 0 7.04 CISPEP 2 TYR B 61 PRO B 62 0 7.59 CRYST1 152.545 70.363 65.152 90.00 108.70 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006555 0.000000 0.002219 0.00000 SCALE2 0.000000 0.014212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016204 0.00000