HEADER HYDROLASE/HYDROLASE INHIBITOR 04-SEP-22 8EDE TITLE CRYSTAL STRUCTURE OF COVALENT INHIBITOR 2-CHLORO-N'-(N-(4- TITLE 2 CHLOROPHENYL)-N-METHYLGLYCYL)ACETOHYDRAZIDE BOUND TO UBIQUITIN C- TITLE 3 TERMINAL HYDROLASE-L1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE ISOZYME L1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UCH-L1,NEURON CYTOPLASMIC PROTEIN 9.5,PGP 9.5,PGP9.5, COMPND 5 UBIQUITIN THIOESTERASE L1; COMPND 6 EC: 3.4.19.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UCHL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS UCHL1, DEUBIQUITYLATING ENZYME, INHIBITOR, HYDROLASE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.PATEL,R.IMHOFF,D.FLAHERTY,C.DAS REVDAT 4 20-NOV-24 8EDE 1 REMARK REVDAT 3 10-APR-24 8EDE 1 JRNL REVDAT 2 27-MAR-24 8EDE 1 JRNL REVDAT 1 20-SEP-23 8EDE 0 JRNL AUTH R.D.IMHOFF,R.PATEL,M.H.SAFDAR,H.B.L.JONES,A.PINTO-FERNANDEZ, JRNL AUTH 2 I.VENDRELL,H.CHEN,C.S.MULI,A.D.KRABILL,B.M.KESSLER, JRNL AUTH 3 M.K.WENDT,C.DAS,D.P.FLAHERTY JRNL TITL COVALENT FRAGMENT SCREENING AND OPTIMIZATION IDENTIFIES THE JRNL TITL 2 CHLOROACETOHYDRAZIDE SCAFFOLD AS INHIBITORS FOR UBIQUITIN JRNL TITL 3 C-TERMINAL HYDROLASE L1. JRNL REF J.MED.CHEM. V. 67 4496 2024 JRNL REFN ISSN 0022-2623 JRNL PMID 38488146 JRNL DOI 10.1021/ACS.JMEDCHEM.3C01661 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 2371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2520 - 4.6245 1.00 2763 160 0.1787 0.2070 REMARK 3 2 4.6245 - 3.6711 1.00 2615 155 0.1420 0.1626 REMARK 3 3 3.6711 - 3.2072 1.00 2608 140 0.1719 0.2024 REMARK 3 4 3.2072 - 2.9140 1.00 2589 129 0.2035 0.2374 REMARK 3 5 2.9140 - 2.7052 1.00 2570 126 0.2130 0.2644 REMARK 3 6 2.7052 - 2.5457 1.00 2555 134 0.2078 0.2730 REMARK 3 7 2.5457 - 2.4182 1.00 2533 153 0.2009 0.2448 REMARK 3 8 2.4182 - 2.3130 1.00 2552 144 0.2112 0.2684 REMARK 3 9 2.3130 - 2.2239 1.00 2491 146 0.2024 0.2267 REMARK 3 10 2.2239 - 2.1472 1.00 2568 122 0.2080 0.2580 REMARK 3 11 2.1472 - 2.0801 1.00 2524 123 0.2120 0.2465 REMARK 3 12 2.0801 - 2.0206 1.00 2522 145 0.2196 0.2611 REMARK 3 13 2.0206 - 1.9674 1.00 2488 161 0.2424 0.2848 REMARK 3 14 1.9674 - 1.9194 1.00 2544 123 0.2637 0.3208 REMARK 3 15 1.9194 - 1.8758 1.00 2512 142 0.2961 0.3464 REMARK 3 16 1.8758 - 1.8359 1.00 2500 135 0.3162 0.3592 REMARK 3 17 1.8359 - 1.7991 1.00 2533 133 0.3428 0.3812 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3521 REMARK 3 ANGLE : 0.834 4742 REMARK 3 CHIRALITY : 0.058 516 REMARK 3 PLANARITY : 0.006 628 REMARK 3 DIHEDRAL : 15.537 2133 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2374 10.3320 24.1373 REMARK 3 T TENSOR REMARK 3 T11: 0.5185 T22: 0.2970 REMARK 3 T33: 0.2506 T12: 0.1370 REMARK 3 T13: 0.1296 T23: 0.0712 REMARK 3 L TENSOR REMARK 3 L11: 3.8796 L22: 4.4226 REMARK 3 L33: 6.4361 L12: 0.8722 REMARK 3 L13: 2.4482 L23: 1.3333 REMARK 3 S TENSOR REMARK 3 S11: -0.2715 S12: -0.3283 S13: -0.3661 REMARK 3 S21: 1.0055 S22: 0.3170 S23: -0.0382 REMARK 3 S31: 0.7135 S32: -0.0577 S33: 0.0126 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5984 3.5194 9.6820 REMARK 3 T TENSOR REMARK 3 T11: 0.2827 T22: 0.2642 REMARK 3 T33: 0.4132 T12: -0.0486 REMARK 3 T13: 0.0363 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 6.4699 L22: 5.7361 REMARK 3 L33: 3.0464 L12: 0.3865 REMARK 3 L13: -0.9414 L23: -0.7168 REMARK 3 S TENSOR REMARK 3 S11: -0.3375 S12: 0.3339 S13: -0.7861 REMARK 3 S21: 0.1254 S22: 0.2953 S23: 0.8905 REMARK 3 S31: 0.6080 S32: -0.5694 S33: 0.0500 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1137 20.1378 -1.8569 REMARK 3 T TENSOR REMARK 3 T11: 0.3590 T22: 0.5818 REMARK 3 T33: 0.3612 T12: -0.0425 REMARK 3 T13: 0.0142 T23: 0.1140 REMARK 3 L TENSOR REMARK 3 L11: 2.1482 L22: 2.8737 REMARK 3 L33: 5.4103 L12: 1.1260 REMARK 3 L13: 0.9112 L23: -0.3562 REMARK 3 S TENSOR REMARK 3 S11: 0.4015 S12: 0.7025 S13: 0.0336 REMARK 3 S21: -0.8507 S22: -0.4129 S23: -0.1765 REMARK 3 S31: -0.0523 S32: -0.1247 S33: -0.0635 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8864 23.5980 17.1605 REMARK 3 T TENSOR REMARK 3 T11: 0.3500 T22: 0.2128 REMARK 3 T33: 0.2353 T12: 0.1127 REMARK 3 T13: 0.0159 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 3.7990 L22: 2.9772 REMARK 3 L33: 3.3129 L12: -0.6429 REMARK 3 L13: 0.7636 L23: -0.2848 REMARK 3 S TENSOR REMARK 3 S11: -0.2916 S12: -0.2608 S13: 0.2834 REMARK 3 S21: 0.5791 S22: 0.1702 S23: 0.1769 REMARK 3 S31: -0.4931 S32: -0.2993 S33: 0.0846 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6106 11.6907 22.9729 REMARK 3 T TENSOR REMARK 3 T11: 0.5799 T22: 0.4114 REMARK 3 T33: 0.3083 T12: 0.1703 REMARK 3 T13: 0.0206 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 3.6952 L22: -0.0253 REMARK 3 L33: 6.8486 L12: 0.2335 REMARK 3 L13: -5.0148 L23: -0.3349 REMARK 3 S TENSOR REMARK 3 S11: -0.6672 S12: -0.5993 S13: -0.3588 REMARK 3 S21: 0.5352 S22: 0.4017 S23: -0.3472 REMARK 3 S31: 0.5677 S32: 0.5320 S33: 0.3100 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3451 13.0261 3.4312 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.2212 REMARK 3 T33: 0.2478 T12: 0.0196 REMARK 3 T13: 0.0065 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 3.7103 L22: 4.7620 REMARK 3 L33: 3.9188 L12: -1.8851 REMARK 3 L13: 2.1197 L23: -0.5790 REMARK 3 S TENSOR REMARK 3 S11: 0.1293 S12: 0.3240 S13: -0.3218 REMARK 3 S21: -0.2685 S22: -0.1067 S23: 0.4691 REMARK 3 S31: 0.0836 S32: -0.0904 S33: -0.0049 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3112 3.5325 8.4846 REMARK 3 T TENSOR REMARK 3 T11: 0.2359 T22: 0.1700 REMARK 3 T33: 0.4021 T12: -0.0048 REMARK 3 T13: 0.0544 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 6.6345 L22: 6.3317 REMARK 3 L33: 8.6042 L12: -6.1698 REMARK 3 L13: -5.9854 L23: 6.0624 REMARK 3 S TENSOR REMARK 3 S11: 0.5376 S12: 0.8664 S13: 0.1081 REMARK 3 S21: -0.1905 S22: -0.2608 S23: -0.1369 REMARK 3 S31: -0.3624 S32: -0.5901 S33: -0.2975 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4377 49.1364 39.2488 REMARK 3 T TENSOR REMARK 3 T11: 0.3322 T22: 0.5404 REMARK 3 T33: 0.2291 T12: 0.1721 REMARK 3 T13: -0.0514 T23: -0.0991 REMARK 3 L TENSOR REMARK 3 L11: 5.4318 L22: 4.2521 REMARK 3 L33: 6.4318 L12: 1.0097 REMARK 3 L13: -0.8041 L23: -3.0757 REMARK 3 S TENSOR REMARK 3 S11: -0.3100 S12: -0.6767 S13: 0.2079 REMARK 3 S21: 0.3199 S22: 0.1726 S23: 0.2282 REMARK 3 S31: -0.3151 S32: -0.3156 S33: 0.1515 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9664 56.7191 28.1191 REMARK 3 T TENSOR REMARK 3 T11: 0.3637 T22: 0.3131 REMARK 3 T33: 0.3689 T12: 0.0174 REMARK 3 T13: -0.0873 T23: -0.0758 REMARK 3 L TENSOR REMARK 3 L11: 6.7963 L22: 4.6692 REMARK 3 L33: 5.9024 L12: 0.4189 REMARK 3 L13: -0.0041 L23: -1.5238 REMARK 3 S TENSOR REMARK 3 S11: -0.5928 S12: -0.2423 S13: 1.1364 REMARK 3 S21: 0.4240 S22: 0.1749 S23: -0.3933 REMARK 3 S31: -0.8755 S32: 0.7784 S33: 0.3869 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1440 39.6484 13.0958 REMARK 3 T TENSOR REMARK 3 T11: 0.8483 T22: 0.8584 REMARK 3 T33: 0.6232 T12: -0.2131 REMARK 3 T13: 0.1064 T23: -0.2630 REMARK 3 L TENSOR REMARK 3 L11: 4.2102 L22: 9.9637 REMARK 3 L33: 4.8618 L12: -6.3183 REMARK 3 L13: -1.9413 L23: 1.6684 REMARK 3 S TENSOR REMARK 3 S11: 0.3127 S12: 1.2869 S13: -0.5782 REMARK 3 S21: -0.9457 S22: -0.8257 S23: 0.4078 REMARK 3 S31: 0.5697 S32: -0.2704 S33: 0.3888 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4073 37.6370 24.2547 REMARK 3 T TENSOR REMARK 3 T11: 0.4752 T22: 0.4030 REMARK 3 T33: 0.3439 T12: 0.2153 REMARK 3 T13: 0.0458 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 4.8681 L22: 1.8412 REMARK 3 L33: 8.8226 L12: -0.1434 REMARK 3 L13: -6.0611 L23: -0.5836 REMARK 3 S TENSOR REMARK 3 S11: -0.7958 S12: 0.3327 S13: -0.7017 REMARK 3 S21: -0.0059 S22: 0.2784 S23: 0.0468 REMARK 3 S31: 0.8151 S32: -0.1106 S33: 0.6694 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3682 38.8404 35.2528 REMARK 3 T TENSOR REMARK 3 T11: 0.5558 T22: 0.7280 REMARK 3 T33: 0.3231 T12: 0.4389 REMARK 3 T13: 0.0590 T23: 0.1488 REMARK 3 L TENSOR REMARK 3 L11: 2.1532 L22: 2.7100 REMARK 3 L33: 2.9023 L12: -0.6836 REMARK 3 L13: -0.4699 L23: -1.1496 REMARK 3 S TENSOR REMARK 3 S11: -0.6627 S12: -0.9228 S13: -0.4488 REMARK 3 S21: 0.4379 S22: 0.1730 S23: -0.1774 REMARK 3 S31: 1.0934 S32: 1.2088 S33: 0.2198 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8014 45.8849 38.3937 REMARK 3 T TENSOR REMARK 3 T11: 0.3828 T22: 0.7081 REMARK 3 T33: 0.3190 T12: 0.1795 REMARK 3 T13: 0.0383 T23: -0.0774 REMARK 3 L TENSOR REMARK 3 L11: 3.2504 L22: 0.0171 REMARK 3 L33: 4.2074 L12: 0.3624 REMARK 3 L13: 3.6992 L23: 0.3993 REMARK 3 S TENSOR REMARK 3 S11: -0.3887 S12: -1.4503 S13: 0.3406 REMARK 3 S21: 0.3414 S22: 0.4376 S23: 0.2363 REMARK 3 S31: -0.0277 S32: -0.4843 S33: 0.1557 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3260 45.1409 20.3051 REMARK 3 T TENSOR REMARK 3 T11: 0.2632 T22: 0.2902 REMARK 3 T33: 0.2150 T12: 0.0615 REMARK 3 T13: -0.0154 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 3.8459 L22: 4.7702 REMARK 3 L33: 7.6122 L12: -1.9846 REMARK 3 L13: -5.1137 L23: 0.9128 REMARK 3 S TENSOR REMARK 3 S11: -0.1359 S12: 0.1857 S13: -0.0401 REMARK 3 S21: -0.1423 S22: 0.0213 S23: -0.3324 REMARK 3 S31: 0.4325 S32: 0.5184 S33: 0.1082 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 190 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6533 55.2470 16.2013 REMARK 3 T TENSOR REMARK 3 T11: 0.4848 T22: 0.5686 REMARK 3 T33: 0.4115 T12: -0.0274 REMARK 3 T13: 0.0416 T23: 0.1235 REMARK 3 L TENSOR REMARK 3 L11: 5.0780 L22: 7.5610 REMARK 3 L33: 3.8482 L12: -1.2052 REMARK 3 L13: 4.3903 L23: -1.4804 REMARK 3 S TENSOR REMARK 3 S11: -0.1983 S12: 1.5050 S13: 0.9241 REMARK 3 S21: -0.9497 S22: -0.0031 S23: -0.5501 REMARK 3 S31: 0.4788 S32: 0.9185 S33: 0.2954 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4716 56.4542 24.3218 REMARK 3 T TENSOR REMARK 3 T11: 0.2273 T22: 0.1218 REMARK 3 T33: 0.3180 T12: 0.0509 REMARK 3 T13: 0.0170 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 7.3354 L22: 7.4920 REMARK 3 L33: 4.1764 L12: -2.3416 REMARK 3 L13: -0.7703 L23: -2.9465 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: 0.0980 S13: 0.8744 REMARK 3 S21: 0.1148 S22: -0.0129 S23: 0.3867 REMARK 3 S31: 0.0232 S32: -0.0153 S33: -0.0286 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000266945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO 721.3, HKL-3000 721.3 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK 721.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45890 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.799 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 2.22900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 1.12_2829 REMARK 200 STARTING MODEL: 2ETL REMARK 200 REMARK 200 REMARK: WELL DEFINED CUBIC CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRI-SODIUM CITRATE 2.4M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.00150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.00150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.00150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.00150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.00150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.00150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.00150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.00150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 502 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 513 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 151 REMARK 465 ALA A 222 REMARK 465 ALA A 223 REMARK 465 GLN B 151 REMARK 465 VAL B 154 REMARK 465 ALA B 222 REMARK 465 ALA B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 66 CG CD OE1 NE2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 GLN A 209 CG CD OE1 NE2 REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 PHE B 62 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 208 CG CD OE1 OE2 REMARK 470 GLN B 209 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 514 O HOH A 520 7555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 206 0.88 -65.75 REMARK 500 REMARK 500 REMARK: NULL DBREF 8EDE A 1 223 UNP P09936 UCHL1_HUMAN 1 223 DBREF 8EDE B 1 223 UNP P09936 UCHL1_HUMAN 1 223 SEQRES 1 A 223 MET GLN LEU LYS PRO MET GLU ILE ASN PRO GLU MET LEU SEQRES 2 A 223 ASN LYS VAL LEU SER ARG LEU GLY VAL ALA GLY GLN TRP SEQRES 3 A 223 ARG PHE VAL ASP VAL LEU GLY LEU GLU GLU GLU SER LEU SEQRES 4 A 223 GLY SER VAL PRO ALA PRO ALA CYS ALA LEU LEU LEU LEU SEQRES 5 A 223 PHE PRO LEU THR ALA GLN HIS GLU ASN PHE ARG LYS LYS SEQRES 6 A 223 GLN ILE GLU GLU LEU LYS GLY GLN GLU VAL SER PRO LYS SEQRES 7 A 223 VAL TYR PHE MET LYS GLN THR ILE GLY ASN SER CYS GLY SEQRES 8 A 223 THR ILE GLY LEU ILE HIS ALA VAL ALA ASN ASN GLN ASP SEQRES 9 A 223 LYS LEU GLY PHE GLU ASP GLY SER VAL LEU LYS GLN PHE SEQRES 10 A 223 LEU SER GLU THR GLU LYS MET SER PRO GLU ASP ARG ALA SEQRES 11 A 223 LYS CYS PHE GLU LYS ASN GLU ALA ILE GLN ALA ALA HIS SEQRES 12 A 223 ASP ALA VAL ALA GLN GLU GLY GLN CYS ARG VAL ASP ASP SEQRES 13 A 223 LYS VAL ASN PHE HIS PHE ILE LEU PHE ASN ASN VAL ASP SEQRES 14 A 223 GLY HIS LEU TYR GLU LEU ASP GLY ARG MET PRO PHE PRO SEQRES 15 A 223 VAL ASN HIS GLY ALA SER SER GLU ASP THR LEU LEU LYS SEQRES 16 A 223 ASP ALA ALA LYS VAL CYS ARG GLU PHE THR GLU ARG GLU SEQRES 17 A 223 GLN GLY GLU VAL ARG PHE SER ALA VAL ALA LEU CYS LYS SEQRES 18 A 223 ALA ALA SEQRES 1 B 223 MET GLN LEU LYS PRO MET GLU ILE ASN PRO GLU MET LEU SEQRES 2 B 223 ASN LYS VAL LEU SER ARG LEU GLY VAL ALA GLY GLN TRP SEQRES 3 B 223 ARG PHE VAL ASP VAL LEU GLY LEU GLU GLU GLU SER LEU SEQRES 4 B 223 GLY SER VAL PRO ALA PRO ALA CYS ALA LEU LEU LEU LEU SEQRES 5 B 223 PHE PRO LEU THR ALA GLN HIS GLU ASN PHE ARG LYS LYS SEQRES 6 B 223 GLN ILE GLU GLU LEU LYS GLY GLN GLU VAL SER PRO LYS SEQRES 7 B 223 VAL TYR PHE MET LYS GLN THR ILE GLY ASN SER CYS GLY SEQRES 8 B 223 THR ILE GLY LEU ILE HIS ALA VAL ALA ASN ASN GLN ASP SEQRES 9 B 223 LYS LEU GLY PHE GLU ASP GLY SER VAL LEU LYS GLN PHE SEQRES 10 B 223 LEU SER GLU THR GLU LYS MET SER PRO GLU ASP ARG ALA SEQRES 11 B 223 LYS CYS PHE GLU LYS ASN GLU ALA ILE GLN ALA ALA HIS SEQRES 12 B 223 ASP ALA VAL ALA GLN GLU GLY GLN CYS ARG VAL ASP ASP SEQRES 13 B 223 LYS VAL ASN PHE HIS PHE ILE LEU PHE ASN ASN VAL ASP SEQRES 14 B 223 GLY HIS LEU TYR GLU LEU ASP GLY ARG MET PRO PHE PRO SEQRES 15 B 223 VAL ASN HIS GLY ALA SER SER GLU ASP THR LEU LEU LYS SEQRES 16 B 223 ASP ALA ALA LYS VAL CYS ARG GLU PHE THR GLU ARG GLU SEQRES 17 B 223 GLN GLY GLU VAL ARG PHE SER ALA VAL ALA LEU CYS LYS SEQRES 18 B 223 ALA ALA HET WEU A 301 30 HET SO4 A 302 5 HET SO4 A 303 5 HET WEU B 301 30 HET SO4 B 302 5 HET SO4 B 303 5 HETNAM WEU 2-[(4-CHLOROPHENYL)-METHYL-AMINO]-~{N}'-ETHANOYL- HETNAM 2 WEU ETHANEHYDRAZIDE HETNAM SO4 SULFATE ION FORMUL 3 WEU 2(C11 H14 CL N3 O2) FORMUL 4 SO4 4(O4 S 2-) FORMUL 9 HOH *208(H2 O) HELIX 1 AA1 ASN A 9 LEU A 20 1 12 HELIX 2 AA2 GLU A 35 VAL A 42 5 8 HELIX 3 AA3 THR A 56 LYS A 71 1 16 HELIX 4 AA4 SER A 89 ASN A 101 1 13 HELIX 5 AA5 SER A 112 THR A 121 1 10 HELIX 6 AA6 SER A 125 ASN A 136 1 12 HELIX 7 AA7 ASN A 136 GLN A 148 1 13 HELIX 8 AA8 SER A 189 ASP A 191 5 3 HELIX 9 AA9 THR A 192 GLU A 208 1 17 HELIX 10 AB1 ASN B 9 LEU B 20 1 12 HELIX 11 AB2 THR B 56 GLU B 69 1 14 HELIX 12 AB3 SER B 89 ASN B 101 1 13 HELIX 13 AB4 SER B 112 THR B 121 1 10 HELIX 14 AB5 SER B 125 ASN B 136 1 12 HELIX 15 AB6 ASN B 136 GLN B 148 1 13 HELIX 16 AB7 SER B 189 ASP B 191 5 3 HELIX 17 AB8 THR B 192 GLU B 208 1 17 SHEET 1 AA1 2 VAL A 22 ALA A 23 0 SHEET 2 AA1 2 GLY A 107 PHE A 108 -1 O GLY A 107 N ALA A 23 SHEET 1 AA2 6 ARG A 27 VAL A 31 0 SHEET 2 AA2 6 SER A 215 CYS A 220 -1 O CYS A 220 N ARG A 27 SHEET 3 AA2 6 ALA A 46 PRO A 54 -1 N LEU A 52 O SER A 215 SHEET 4 AA2 6 PHE A 160 VAL A 168 -1 O ILE A 163 N LEU A 51 SHEET 5 AA2 6 HIS A 171 LEU A 175 -1 O TYR A 173 N ASN A 166 SHEET 6 AA2 6 VAL A 183 ALA A 187 -1 O HIS A 185 N LEU A 172 SHEET 1 AA3 2 VAL B 22 ALA B 23 0 SHEET 2 AA3 2 GLY B 107 PHE B 108 -1 O GLY B 107 N ALA B 23 SHEET 1 AA4 6 ARG B 27 ASP B 30 0 SHEET 2 AA4 6 SER B 215 CYS B 220 -1 O CYS B 220 N ARG B 27 SHEET 3 AA4 6 ALA B 46 PRO B 54 -1 N LEU B 52 O SER B 215 SHEET 4 AA4 6 PHE B 160 VAL B 168 -1 O PHE B 165 N LEU B 49 SHEET 5 AA4 6 HIS B 171 LEU B 175 -1 O LEU B 175 N LEU B 164 SHEET 6 AA4 6 VAL B 183 ALA B 187 -1 O HIS B 185 N LEU B 172 LINK SG CYS A 90 C13 WEU A 301 1555 1555 1.87 LINK SG CYS B 90 C13 WEU B 301 1555 1555 1.93 CISPEP 1 ALA A 44 PRO A 45 0 -3.48 CISPEP 2 ALA B 44 PRO B 45 0 -2.75 CRYST1 110.003 110.003 79.609 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009091 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009091 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012561 0.00000