HEADER PROTEIN BINDING 04-SEP-22 8EDI TITLE STRUCTURE OF C. ELEGANS UNC-5 IG 1+2 DOMAINS BOUND TO HEPARIN DP4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NETRIN RECEPTOR UNC-5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UNCOORDINATED PROTEIN 5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: UNC-5, B0273.4; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE CELLS KEYWDS CELL SURFACE RECEPTOR, AXON GUIDANCE, SIGNALING, GLYCOPROTEIN, KEYWDS 2 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.M.PRIEST,E.OZKAN REVDAT 3 14-AUG-24 8EDI 1 JRNL REVDAT 2 25-OCT-23 8EDI 1 REMARK REVDAT 1 11-JAN-23 8EDI 0 JRNL AUTH J.M.PRIEST,E.L.NICHOLS,R.G.SMOCK,J.B.HOPKINS,J.L.MENDOZA, JRNL AUTH 2 R.MEIJERS,K.SHEN,E.OZKAN JRNL TITL STRUCTURAL INSIGHTS INTO THE FORMATION OF REPULSIVE NETRIN JRNL TITL 2 GUIDANCE COMPLEXES. JRNL REF SCI ADV V. 10 J8083 2024 JRNL REFN ESSN 2375-2548 JRNL PMID 38363837 JRNL DOI 10.1126/SCIADV.ADJ8083 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 58.0 REMARK 3 NUMBER OF REFLECTIONS : 21299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1000 - 4.2100 1.00 4773 251 0.1882 0.2081 REMARK 3 2 4.2100 - 3.3400 1.00 4414 233 0.2288 0.2880 REMARK 3 3 3.3400 - 2.9200 1.00 4347 229 0.3270 0.3597 REMARK 3 4 2.9200 - 2.6500 0.66 2867 150 0.3390 0.3355 REMARK 3 5 2.6500 - 2.4600 0.38 1604 84 0.3917 0.4354 REMARK 3 6 2.4600 - 2.3200 0.26 1097 58 0.3552 0.4423 REMARK 3 7 2.3200 - 2.2000 0.18 765 41 0.3996 0.4148 REMARK 3 8 2.2000 - 2.1100 0.09 367 19 0.3742 0.5373 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.319 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3359 REMARK 3 ANGLE : 1.178 4587 REMARK 3 CHIRALITY : 0.099 569 REMARK 3 PLANARITY : 0.008 570 REMARK 3 DIHEDRAL : 13.036 1317 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1896 -21.5088 47.7084 REMARK 3 T TENSOR REMARK 3 T11: 0.4473 T22: 0.8652 REMARK 3 T33: 0.7739 T12: -0.2127 REMARK 3 T13: -0.0167 T23: -0.1016 REMARK 3 L TENSOR REMARK 3 L11: 6.4013 L22: 6.6265 REMARK 3 L33: 6.4009 L12: -0.8832 REMARK 3 L13: -0.4025 L23: 2.9875 REMARK 3 S TENSOR REMARK 3 S11: 0.1238 S12: -1.0190 S13: 0.4498 REMARK 3 S21: 0.6266 S22: -0.4247 S23: 1.2323 REMARK 3 S31: -0.0621 S32: -0.8790 S33: 0.2358 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9417 -21.4884 8.6710 REMARK 3 T TENSOR REMARK 3 T11: 0.5118 T22: 0.5212 REMARK 3 T33: 0.4140 T12: -0.2593 REMARK 3 T13: -0.1604 T23: 0.0838 REMARK 3 L TENSOR REMARK 3 L11: 4.0430 L22: 1.4240 REMARK 3 L33: 5.3833 L12: 0.5433 REMARK 3 L13: -0.8043 L23: -1.4170 REMARK 3 S TENSOR REMARK 3 S11: -0.1811 S12: 0.6840 S13: 0.2267 REMARK 3 S21: -0.1448 S22: 0.0871 S23: -0.1352 REMARK 3 S31: -0.1920 S32: 0.0396 S33: 0.0631 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7417 -5.6504 24.7040 REMARK 3 T TENSOR REMARK 3 T11: 0.7249 T22: 0.4123 REMARK 3 T33: 0.6043 T12: -0.0706 REMARK 3 T13: -0.2765 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 5.1106 L22: 9.1314 REMARK 3 L33: 7.1549 L12: -1.1555 REMARK 3 L13: 1.4408 L23: -6.3053 REMARK 3 S TENSOR REMARK 3 S11: -0.5965 S12: 0.1111 S13: 0.9460 REMARK 3 S21: -0.1120 S22: 0.4452 S23: 0.2152 REMARK 3 S31: -0.9005 S32: -0.8461 S33: -0.0087 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4105 -7.1946 19.2253 REMARK 3 T TENSOR REMARK 3 T11: 0.6091 T22: 0.4605 REMARK 3 T33: 0.6754 T12: -0.2029 REMARK 3 T13: -0.2800 T23: 0.0884 REMARK 3 L TENSOR REMARK 3 L11: 5.6209 L22: 8.3000 REMARK 3 L33: 5.9036 L12: -2.5518 REMARK 3 L13: -0.1487 L23: -1.1198 REMARK 3 S TENSOR REMARK 3 S11: -0.3823 S12: 0.6724 S13: 1.0381 REMARK 3 S21: 0.1375 S22: -0.2363 S23: -0.9714 REMARK 3 S31: -0.4628 S32: 0.7334 S33: 0.5066 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1767 -15.9570 60.9515 REMARK 3 T TENSOR REMARK 3 T11: 0.6884 T22: 0.5790 REMARK 3 T33: 0.4922 T12: -0.2033 REMARK 3 T13: 0.0400 T23: -0.1726 REMARK 3 L TENSOR REMARK 3 L11: 1.7032 L22: 3.1658 REMARK 3 L33: 5.3738 L12: 0.2753 REMARK 3 L13: -0.7006 L23: 0.1423 REMARK 3 S TENSOR REMARK 3 S11: 0.1524 S12: -0.5602 S13: 0.1541 REMARK 3 S21: 0.7945 S22: -0.4668 S23: 0.7002 REMARK 3 S31: 0.2403 S32: -0.4014 S33: 0.3256 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and ((resid 2 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 3 through 159 or resid 161 REMARK 3 through 903)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 2 through 159 or REMARK 3 resid 161 through 903)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033167 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21299 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 49.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 58.0 REMARK 200 DATA REDUNDANCY : 18.40 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 24.6 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 1.66000 REMARK 200 R SYM FOR SHELL (I) : 1.66000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 8EDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4% (V/V) PENTAERYTHRITOL ETHOXYLATE REMARK 280 (3/4 EO/OH), 0.1 M SODIUM ACETATE PH 4.6, 16% (W/V) PEG 8000, REMARK 280 0.2 M NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 141.66333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 283.32667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 212.49500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 354.15833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.83167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 141.66333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 283.32667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 354.15833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 212.49500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 70.83167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -3 REMARK 465 ASP A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 HIS A 206 REMARK 465 ALA B -3 REMARK 465 ASP B -2 REMARK 465 PRO B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 2 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 86 CB CYS A 86 SG -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 17 -123.73 65.51 REMARK 500 SER A 39 -28.51 74.97 REMARK 500 SER A 89 -168.37 -107.85 REMARK 500 ASP A 155 -124.62 -141.00 REMARK 500 TYR A 200 -167.65 -123.31 REMARK 500 ARG B 17 -121.95 62.56 REMARK 500 SER B 39 -29.78 74.58 REMARK 500 SER B 55 -44.18 62.58 REMARK 500 SER B 89 -167.71 -103.02 REMARK 500 ASP B 155 -125.16 -141.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8EDC RELATED DB: PDB REMARK 900 8EDC CONTAINS THE SAME PROTEIN UNLIGANDED. REMARK 900 RELATED ID: 8EDK RELATED DB: PDB REMARK 900 8EDK IS FOR THE SAME CITATION. THE PROTEIN IN 8EDI INTERACTS WITH REMARK 900 THE ONE IN 8EDK. DBREF 8EDI A 1 200 UNP Q26261 UNC5_CAEEL 29 228 DBREF 8EDI B 1 200 UNP Q26261 UNC5_CAEEL 29 228 SEQADV 8EDI ALA A -3 UNP Q26261 EXPRESSION TAG SEQADV 8EDI ASP A -2 UNP Q26261 EXPRESSION TAG SEQADV 8EDI PRO A -1 UNP Q26261 EXPRESSION TAG SEQADV 8EDI GLY A 0 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS A 201 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS A 202 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS A 203 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS A 204 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS A 205 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS A 206 UNP Q26261 EXPRESSION TAG SEQADV 8EDI ALA B -3 UNP Q26261 EXPRESSION TAG SEQADV 8EDI ASP B -2 UNP Q26261 EXPRESSION TAG SEQADV 8EDI PRO B -1 UNP Q26261 EXPRESSION TAG SEQADV 8EDI GLY B 0 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS B 201 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS B 202 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS B 203 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS B 204 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS B 205 UNP Q26261 EXPRESSION TAG SEQADV 8EDI HIS B 206 UNP Q26261 EXPRESSION TAG SEQRES 1 A 210 ALA ASP PRO GLY MET ASP GLU ILE THR ILE THR THR GLN SEQRES 2 A 210 PRO LYS SER GLY TYR VAL ILE ARG ASN LYS PRO LEU ARG SEQRES 3 A 210 LEU GLN CYS ARG ALA ASN HIS ALA THR LYS ILE ARG TYR SEQRES 4 A 210 LYS CYS SER SER LYS TRP ILE ASP ASP SER ARG ILE GLU SEQRES 5 A 210 LYS LEU ILE GLY THR ASP SER THR SER GLY VAL GLY TYR SEQRES 6 A 210 ILE ASP ALA SER VAL ASP ILE SER ARG ILE ASP VAL ASP SEQRES 7 A 210 THR SER GLY HIS VAL ASP ALA PHE GLN CYS GLN CYS TYR SEQRES 8 A 210 ALA SER GLY ASP ASP ASP GLN ASP VAL VAL ALA SER ASP SEQRES 9 A 210 VAL ALA THR VAL HIS LEU ALA TYR MET ARG LYS HIS PHE SEQRES 10 A 210 LEU LYS SER PRO VAL ALA GLN ARG VAL GLN GLU GLY THR SEQRES 11 A 210 THR LEU GLN LEU PRO CYS GLN ALA PRO GLU SER ASP PRO SEQRES 12 A 210 LYS ALA GLU LEU THR TRP TYR LYS ASP GLY VAL VAL VAL SEQRES 13 A 210 GLN PRO ASP ALA ASN VAL ILE ARG ALA SER ASP GLY SER SEQRES 14 A 210 LEU ILE MET SER ALA ALA ARG LEU SER ASP SER GLY ASN SEQRES 15 A 210 TYR THR CYS GLU ALA THR ASN VAL ALA ASN SER ARG LYS SEQRES 16 A 210 THR ASP PRO VAL GLU VAL GLN ILE TYR HIS HIS HIS HIS SEQRES 17 A 210 HIS HIS SEQRES 1 B 210 ALA ASP PRO GLY MET ASP GLU ILE THR ILE THR THR GLN SEQRES 2 B 210 PRO LYS SER GLY TYR VAL ILE ARG ASN LYS PRO LEU ARG SEQRES 3 B 210 LEU GLN CYS ARG ALA ASN HIS ALA THR LYS ILE ARG TYR SEQRES 4 B 210 LYS CYS SER SER LYS TRP ILE ASP ASP SER ARG ILE GLU SEQRES 5 B 210 LYS LEU ILE GLY THR ASP SER THR SER GLY VAL GLY TYR SEQRES 6 B 210 ILE ASP ALA SER VAL ASP ILE SER ARG ILE ASP VAL ASP SEQRES 7 B 210 THR SER GLY HIS VAL ASP ALA PHE GLN CYS GLN CYS TYR SEQRES 8 B 210 ALA SER GLY ASP ASP ASP GLN ASP VAL VAL ALA SER ASP SEQRES 9 B 210 VAL ALA THR VAL HIS LEU ALA TYR MET ARG LYS HIS PHE SEQRES 10 B 210 LEU LYS SER PRO VAL ALA GLN ARG VAL GLN GLU GLY THR SEQRES 11 B 210 THR LEU GLN LEU PRO CYS GLN ALA PRO GLU SER ASP PRO SEQRES 12 B 210 LYS ALA GLU LEU THR TRP TYR LYS ASP GLY VAL VAL VAL SEQRES 13 B 210 GLN PRO ASP ALA ASN VAL ILE ARG ALA SER ASP GLY SER SEQRES 14 B 210 LEU ILE MET SER ALA ALA ARG LEU SER ASP SER GLY ASN SEQRES 15 B 210 TYR THR CYS GLU ALA THR ASN VAL ALA ASN SER ARG LYS SEQRES 16 B 210 THR ASP PRO VAL GLU VAL GLN ILE TYR HIS HIS HIS HIS SEQRES 17 B 210 HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET FUC C 3 10 HET NAG D 1 14 HET NAG D 2 14 HET FUC D 3 10 HET SGN E 1 40 HET IDS E 2 32 HET SGN E 3 38 HET UAP E 4 30 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM UAP 4-DEOXY-2-O-SULFO-ALPHA-L-THREO-HEX-4-ENOPYRANURONIC HETNAM 2 UAP ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN SGN N,O6-DISULFO-GLUCOSAMINE; 6-O-SULFO-N-SULFO-ALPHA-D- HETSYN 2 SGN GLUCOSAMINE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETSYN 3 SGN GLUCOSE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; HETSYN 4 SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-GLUCOSE HETSYN IDS O2-SULFO-GLUCURONIC ACID; 2-O-SULFO-ALPHA-L-IDURONIC HETSYN 2 IDS ACID; 2-O-SULFO-L-IDURONIC ACID; 2-O-SULFO-IDURONIC HETSYN 3 IDS ACID HETSYN UAP 4-DEOXY-2-O-SULFO-ALPHA-L-THREO-HEX-4-ENURONIC ACID; 4- HETSYN 2 UAP DEOXY-2-O-SULFO-L-THREO-HEX-4-ENURONIC ACID; 4-DEOXY- HETSYN 3 UAP 2-O-SULFO-THREO-HEX-4-ENURONIC ACID FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 SGN 2(C6 H13 N O11 S2) FORMUL 5 IDS C6 H10 O10 S FORMUL 5 UAP C6 H8 O9 S FORMUL 6 HOH *18(H2 O) HELIX 1 AA1 ASP A 43 ILE A 47 5 5 HELIX 2 AA2 SER A 69 THR A 75 1 7 HELIX 3 AA3 ARG A 172 SER A 176 5 5 HELIX 4 AA4 ASP B 43 ILE B 47 5 5 HELIX 5 AA5 SER B 69 THR B 75 1 7 HELIX 6 AA6 HIS B 78 ALA B 81 5 4 HELIX 7 AA7 ARG B 172 SER B 176 5 5 SHEET 1 AA1 4 THR A 5 THR A 8 0 SHEET 2 AA1 4 LEU A 21 ASN A 28 -1 O ARG A 26 N THR A 7 SHEET 3 AA1 4 GLY A 60 ILE A 68 -1 O ILE A 68 N LEU A 21 SHEET 4 AA1 4 GLU A 48 THR A 53 -1 N GLU A 48 O SER A 65 SHEET 1 AA2 4 GLY A 13 ILE A 16 0 SHEET 2 AA2 4 ALA A 102 MET A 109 1 O HIS A 105 N VAL A 15 SHEET 3 AA2 4 GLN A 83 SER A 89 -1 N CYS A 84 O ALA A 102 SHEET 4 AA2 4 VAL A 97 ALA A 98 -1 O VAL A 97 N ALA A 88 SHEET 1 AA3 5 LYS A 40 TRP A 41 0 SHEET 2 AA3 5 LYS A 32 CYS A 37 -1 N CYS A 37 O LYS A 40 SHEET 3 AA3 5 GLN A 83 SER A 89 -1 O TYR A 87 N ARG A 34 SHEET 4 AA3 5 ALA A 102 MET A 109 -1 O ALA A 102 N CYS A 84 SHEET 5 AA3 5 SER A 137 ASP A 138 -1 O ASP A 138 N TYR A 108 SHEET 1 AA4 5 GLN A 120 GLN A 123 0 SHEET 2 AA4 5 VAL A 195 TYR A 200 1 O GLN A 198 N VAL A 122 SHEET 3 AA4 5 GLY A 177 ASN A 185 -1 N TYR A 179 O VAL A 195 SHEET 4 AA4 5 GLU A 142 LYS A 147 -1 N THR A 144 O GLU A 182 SHEET 5 AA4 5 VAL A 150 VAL A 151 -1 O VAL A 150 N LYS A 147 SHEET 1 AA5 4 GLN A 120 GLN A 123 0 SHEET 2 AA5 4 VAL A 195 TYR A 200 1 O GLN A 198 N VAL A 122 SHEET 3 AA5 4 GLY A 177 ASN A 185 -1 N TYR A 179 O VAL A 195 SHEET 4 AA5 4 ASN A 188 LYS A 191 -1 O ARG A 190 N ALA A 183 SHEET 1 AA6 3 LEU A 128 LEU A 130 0 SHEET 2 AA6 3 LEU A 166 MET A 168 -1 O LEU A 166 N LEU A 130 SHEET 3 AA6 3 VAL A 158 ARG A 160 -1 N ILE A 159 O ILE A 167 SHEET 1 AA7 4 THR B 5 THR B 8 0 SHEET 2 AA7 4 LEU B 21 ASN B 28 -1 O ARG B 26 N THR B 7 SHEET 3 AA7 4 GLY B 60 ILE B 68 -1 O ILE B 68 N LEU B 21 SHEET 4 AA7 4 GLU B 48 THR B 53 -1 N GLU B 48 O SER B 65 SHEET 1 AA8 5 GLY B 13 VAL B 15 0 SHEET 2 AA8 5 ALA B 102 LEU B 106 1 O HIS B 105 N VAL B 15 SHEET 3 AA8 5 GLN B 83 SER B 89 -1 N CYS B 84 O ALA B 102 SHEET 4 AA8 5 LYS B 32 CYS B 37 -1 N LYS B 36 O GLN B 85 SHEET 5 AA8 5 LYS B 40 TRP B 41 -1 O LYS B 40 N CYS B 37 SHEET 1 AA9 4 GLY B 13 VAL B 15 0 SHEET 2 AA9 4 ALA B 102 LEU B 106 1 O HIS B 105 N VAL B 15 SHEET 3 AA9 4 GLN B 83 SER B 89 -1 N CYS B 84 O ALA B 102 SHEET 4 AA9 4 VAL B 97 ALA B 98 -1 O VAL B 97 N ALA B 88 SHEET 1 AB1 2 TYR B 108 MET B 109 0 SHEET 2 AB1 2 SER B 137 ASP B 138 -1 O ASP B 138 N TYR B 108 SHEET 1 AB2 5 GLN B 120 GLN B 123 0 SHEET 2 AB2 5 VAL B 195 TYR B 200 1 O GLN B 198 N GLN B 120 SHEET 3 AB2 5 GLY B 177 ASN B 185 -1 N TYR B 179 O VAL B 195 SHEET 4 AB2 5 GLU B 142 LYS B 147 -1 N THR B 144 O GLU B 182 SHEET 5 AB2 5 VAL B 150 VAL B 151 -1 O VAL B 150 N LYS B 147 SHEET 1 AB3 4 GLN B 120 GLN B 123 0 SHEET 2 AB3 4 VAL B 195 TYR B 200 1 O GLN B 198 N GLN B 120 SHEET 3 AB3 4 GLY B 177 ASN B 185 -1 N TYR B 179 O VAL B 195 SHEET 4 AB3 4 ASN B 188 LYS B 191 -1 O ARG B 190 N ALA B 183 SHEET 1 AB4 3 LEU B 128 LEU B 130 0 SHEET 2 AB4 3 LEU B 166 MET B 168 -1 O MET B 168 N LEU B 128 SHEET 3 AB4 3 VAL B 158 ARG B 160 -1 N ILE B 159 O ILE B 167 SSBOND 1 CYS A 25 CYS A 86 1555 1555 2.05 SSBOND 2 CYS A 37 CYS A 84 1555 1555 2.04 SSBOND 3 CYS A 132 CYS A 181 1555 1555 2.02 SSBOND 4 CYS B 25 CYS B 86 1555 1555 2.04 SSBOND 5 CYS B 37 CYS B 84 1555 1555 2.04 SSBOND 6 CYS B 132 CYS B 181 1555 1555 2.02 LINK ND2 ASN A 178 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN B 178 C1 NAG D 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 LINK O6 NAG C 1 C1 FUC C 3 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O6 NAG D 1 C1 FUC D 3 1555 1555 1.44 LINK O4 ASGN E 1 C1 AIDS E 2 1555 1555 1.44 LINK O4 BSGN E 1 C1 BIDS E 2 1555 1555 1.48 LINK O4 AIDS E 2 C1 ASGN E 3 1555 1555 1.47 LINK O4 BIDS E 2 C1 BSGN E 3 1555 1555 1.49 LINK O4 ASGN E 3 C1 AUAP E 4 1555 1555 1.44 LINK O4 BSGN E 3 C1 BUAP E 4 1555 1555 1.48 CISPEP 1 ASP A 138 PRO A 139 0 -0.84 CISPEP 2 ASP B 138 PRO B 139 0 -1.26 CRYST1 69.460 69.460 424.990 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014397 0.008312 0.000000 0.00000 SCALE2 0.000000 0.016624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002353 0.00000 MTRIX1 1 -0.535665 -0.842345 0.059311 4.67759 1 MTRIX2 1 -0.841123 0.526040 -0.125675 8.15167 1 MTRIX3 1 0.074662 -0.117207 -0.990297 65.68290 1