HEADER VIRAL PROTEIN 06-SEP-22 8EDZ TITLE THE CRYSTAL STRUCTURE OF I38T MUTANT PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH COMPOUND SJ000986319 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 3 ORGANISM_TAXID: 655278; SOURCE 4 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,J.P.SLAVISH,S.JAYARAMAN,Z.RANKOVIC,S.W.WHITE REVDAT 2 18-OCT-23 8EDZ 1 JRNL REVDAT 1 05-OCT-22 8EDZ 0 JRNL AUTH M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE JRNL TITL THE CRYSTAL STRUCTURE OF I38T MUTANT PA ENDONUCLEASE JRNL TITL 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH COMPOUND SJ000986319 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, REMARK 1 AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, REMARK 1 AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, REMARK 1 AUTH 4 S.W.WHITE REMARK 1 TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF REMARK 1 TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS REMARK 1 TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE REMARK 1 TITL 4 RESISTANCE POTENTIAL. REMARK 1 REF EUR.J.MED.CHEM. V. 247 15035 2023 REMARK 1 REFN ISSN 0223-5234 REMARK 1 PMID 36603507 REMARK 1 DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 7859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.7100 - 3.8200 0.94 2553 114 0.1898 0.2313 REMARK 3 2 3.8200 - 3.0300 0.97 2453 161 0.2289 0.2977 REMARK 3 3 3.0300 - 2.6500 0.97 2463 115 0.3050 0.4068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.897 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1522 REMARK 3 ANGLE : 0.656 2064 REMARK 3 CHIRALITY : 0.042 218 REMARK 3 PLANARITY : 0.003 261 REMARK 3 DIHEDRAL : 7.073 222 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1949 -35.1095 -3.9795 REMARK 3 T TENSOR REMARK 3 T11: 0.7486 T22: 0.8885 REMARK 3 T33: 0.6002 T12: 0.0510 REMARK 3 T13: -0.0650 T23: 0.1797 REMARK 3 L TENSOR REMARK 3 L11: 6.7328 L22: 2.6897 REMARK 3 L33: 8.1415 L12: 0.3500 REMARK 3 L13: 0.2801 L23: 1.9558 REMARK 3 S TENSOR REMARK 3 S11: -0.3418 S12: -0.8890 S13: 0.0854 REMARK 3 S21: 1.3628 S22: 0.3138 S23: 0.3821 REMARK 3 S31: 0.2088 S32: 0.9066 S33: 0.0269 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0034 -41.2217 -16.3319 REMARK 3 T TENSOR REMARK 3 T11: 0.6080 T22: 0.6308 REMARK 3 T33: 0.6354 T12: -0.0764 REMARK 3 T13: 0.0865 T23: 0.1743 REMARK 3 L TENSOR REMARK 3 L11: 2.7881 L22: 7.4065 REMARK 3 L33: 1.8393 L12: -0.8163 REMARK 3 L13: 0.3132 L23: 3.5177 REMARK 3 S TENSOR REMARK 3 S11: -0.1547 S12: 0.0999 S13: 0.2349 REMARK 3 S21: 0.5756 S22: -0.1625 S23: 0.5616 REMARK 3 S31: 0.7119 S32: 0.1831 S33: 0.4845 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1328 -48.9130 -22.9358 REMARK 3 T TENSOR REMARK 3 T11: 0.6340 T22: 0.7906 REMARK 3 T33: 0.5790 T12: -0.0008 REMARK 3 T13: 0.1800 T23: 0.1649 REMARK 3 L TENSOR REMARK 3 L11: 4.1859 L22: 6.2112 REMARK 3 L33: 2.5848 L12: 0.7935 REMARK 3 L13: 0.4206 L23: 2.2227 REMARK 3 S TENSOR REMARK 3 S11: -0.2840 S12: 0.6307 S13: -0.1741 REMARK 3 S21: -0.2788 S22: 0.2571 S23: -0.1888 REMARK 3 S31: 0.3168 S32: 0.7574 S33: 0.1031 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6362 -36.0497 -26.9649 REMARK 3 T TENSOR REMARK 3 T11: 0.9484 T22: 1.6489 REMARK 3 T33: 0.8202 T12: -0.2098 REMARK 3 T13: 0.0979 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 3.2479 L22: 2.0675 REMARK 3 L33: 5.8801 L12: -2.2494 REMARK 3 L13: 4.1757 L23: -2.7245 REMARK 3 S TENSOR REMARK 3 S11: 0.4004 S12: -2.7725 S13: 0.3760 REMARK 3 S21: -0.3182 S22: -0.0715 S23: -0.4925 REMARK 3 S31: 1.1382 S32: -1.5461 S33: -0.7370 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4688 -36.8439 -29.3124 REMARK 3 T TENSOR REMARK 3 T11: 0.6774 T22: 0.7893 REMARK 3 T33: 0.5581 T12: -0.2145 REMARK 3 T13: 0.0596 T23: 0.2078 REMARK 3 L TENSOR REMARK 3 L11: 5.8266 L22: 6.3335 REMARK 3 L33: 4.6073 L12: 0.4540 REMARK 3 L13: 1.5752 L23: 3.4877 REMARK 3 S TENSOR REMARK 3 S11: -0.2558 S12: 0.4476 S13: 0.3421 REMARK 3 S21: -0.6452 S22: 0.0738 S23: -0.0183 REMARK 3 S31: 0.0338 S32: -0.6230 S33: 0.0748 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0748 -25.2523 -16.5417 REMARK 3 T TENSOR REMARK 3 T11: 0.5095 T22: 0.6200 REMARK 3 T33: 0.6974 T12: -0.2254 REMARK 3 T13: -0.0137 T23: 0.2779 REMARK 3 L TENSOR REMARK 3 L11: 2.3280 L22: 7.0219 REMARK 3 L33: 9.4539 L12: -1.9626 REMARK 3 L13: 1.8231 L23: 4.6120 REMARK 3 S TENSOR REMARK 3 S11: -0.1569 S12: -0.6322 S13: -0.3125 REMARK 3 S21: 0.1928 S22: 0.1287 S23: -0.2920 REMARK 3 S31: -0.2515 S32: 0.2570 S33: 0.0270 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7865 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 74.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.84400 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.84400 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.12550 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.84400 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.84400 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.12550 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.84400 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.84400 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.12550 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.84400 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.84400 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.12550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.84400 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.84400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.12550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.84400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.84400 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.12550 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.84400 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.84400 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.12550 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.84400 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.84400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.12550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 19 CE NZ REMARK 470 LYS A 22 NZ REMARK 470 LYS A 29 CE NZ REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 LYS A 34 CE NZ REMARK 470 SER A 53 OG REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 ASP A 164 CG OD1 OD2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 -64.30 -95.33 REMARK 500 ARG A 125 -145.23 -95.73 REMARK 500 LYS A 139 6.64 53.54 REMARK 500 GLU A 141 -62.35 60.97 REMARK 500 LYS A 158 15.74 59.31 REMARK 500 THR A 162 -66.05 59.38 REMARK 500 GLN A 193 21.75 -72.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 WFW A 201 REMARK 610 QQ4 A 202 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 204 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 108.7 REMARK 620 3 GLU A 119 OE2 168.0 83.2 REMARK 620 4 ILE A 120 O 87.1 97.6 90.9 REMARK 620 5 WFW A 201 O19 104.8 94.9 73.8 159.0 REMARK 620 6 WFW A 201 O21 80.0 171.1 88.0 80.8 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 ASP A 108 OD1 105.6 REMARK 620 3 WFW A 201 O19 116.2 74.2 REMARK 620 4 WFW A 201 O24 118.0 127.7 61.9 REMARK 620 5 HOH A 301 O 171.6 75.8 55.9 57.0 REMARK 620 6 HOH A 302 O 121.6 100.7 120.8 80.5 65.6 REMARK 620 N 1 2 3 4 5 DBREF 8EDZ A 1 50 UNP C6H0Y9 C6H0Y9_9INFA 1 50 DBREF 8EDZ A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 8EDZ MET A -19 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ GLY A -18 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ SER A -17 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ SER A -16 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ HIS A -15 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ HIS A -14 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ HIS A -13 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ HIS A -12 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ HIS A -11 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ HIS A -10 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ SER A -9 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ SER A -8 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ GLY A -7 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ LEU A -6 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ VAL A -5 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ PRO A -4 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ ARG A -3 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ GLY A -2 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ SER A -1 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ HIS A 0 UNP C6H0Y9 EXPRESSION TAG SEQADV 8EDZ THR A 38 UNP C6H0Y9 ILE 38 ENGINEERED MUTATION SEQADV 8EDZ GLY A 51 UNP C6H0Y9 LINKER SEQADV 8EDZ GLY A 52 UNP C6H0Y9 LINKER SEQADV 8EDZ SER A 53 UNP C6H0Y9 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET WFW A 201 27 HET QQ4 A 202 41 HET MN A 203 1 HET MN A 204 1 HET SO4 A 205 5 HETNAM WFW BENZYL [2-(6-{[2-(4-AMINO-7H-PYRROLO[2,3-D]PYRIMIDIN-7- HETNAM 2 WFW YL)ETHYL]CARBAMOYL}-5-HYDROXY-4-OXO-1,4- HETNAM 3 WFW DIHYDROPYRIMIDIN-2-YL)PROPAN-2-YL]CARBAMATE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 WFW C24 H26 N8 O5 FORMUL 3 QQ4 C36 H56 N6 O6 FORMUL 4 MN 2(MN 2+) FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *20(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 GLU A 23 1 14 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 204 1555 1555 2.18 LINK OE2 GLU A 80 MN MN A 203 1555 1555 2.25 LINK OD1 ASP A 108 MN MN A 203 1555 1555 2.08 LINK OD2 ASP A 108 MN MN A 204 1555 1555 2.20 LINK OE2 GLU A 119 MN MN A 204 1555 1555 2.12 LINK O ILE A 120 MN MN A 204 1555 1555 2.02 LINK O19 WFW A 201 MN MN A 203 1555 1555 2.62 LINK O24 WFW A 201 MN MN A 203 1555 1555 1.91 LINK O19 WFW A 201 MN MN A 204 1555 1555 1.94 LINK O21 WFW A 201 MN MN A 204 1555 1555 2.24 LINK MN MN A 203 O HOH A 301 1555 1555 2.62 LINK MN MN A 203 O HOH A 302 1555 1555 2.15 CRYST1 89.688 89.688 132.251 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011150 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011150 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007561 0.00000