HEADER HYDROLASE 10-SEP-22 8EG3 TITLE STRUCTURE OF HUMAN PLACENTAL STEROID (ESTRONE/DHEA) SULFATASE AT 2.0 TITLE 2 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: STERYL-SULFATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARYLSULFATASE C,ASC,ESTRONE SULFATASE,STEROID SULFATASE, COMPND 5 STERYL-SULFATE SULFOHYDROLASE; COMPND 6 EC: 3.1.6.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS STEROID, SULFATASE, SEX STEROID BIOSYNTHESIS, ER MEMBRANE-BOUND KEYWDS 2 ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.GHOSH REVDAT 3 25-OCT-23 8EG3 1 REMARK REVDAT 2 14-DEC-22 8EG3 1 JRNL REVDAT 1 07-DEC-22 8EG3 0 JRNL AUTH D.GHOSH JRNL TITL STRUCTURE OF HUMAN PLACENTAL STEROID SULFATASE AT 2.0 JRNL TITL 2 ANGSTROM RESOLUTION: CATALYSIS, QUATERNARY ASSOCIATION, AND JRNL TITL 3 A SECONDARY LIGAND SITE. JRNL REF J.STEROID BIOCHEM.MOL.BIOL. V. 227 06228 2022 JRNL REFN ISSN 0960-0760 JRNL PMID 36427797 JRNL DOI 10.1016/J.JSBMB.2022.106228 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 51263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1300 - 5.3500 0.83 2413 122 0.2299 0.2882 REMARK 3 2 5.3500 - 4.2500 0.99 2777 136 0.1755 0.1806 REMARK 3 3 4.2500 - 3.7100 1.00 2784 118 0.1679 0.2079 REMARK 3 4 3.7100 - 3.3700 1.00 2739 165 0.2027 0.2290 REMARK 3 5 3.3700 - 3.1300 1.00 2770 130 0.2177 0.2397 REMARK 3 6 3.1300 - 2.9500 1.00 2704 153 0.2401 0.2654 REMARK 3 7 2.9500 - 2.8000 1.00 2739 162 0.2351 0.2617 REMARK 3 8 2.8000 - 2.6800 1.00 2700 147 0.2327 0.2745 REMARK 3 9 2.6800 - 2.5800 1.00 2713 162 0.2402 0.2681 REMARK 3 10 2.5800 - 2.4900 1.00 2719 142 0.2492 0.2758 REMARK 3 11 2.4900 - 2.4100 1.00 2716 145 0.2481 0.3001 REMARK 3 12 2.4100 - 2.3400 1.00 2723 118 0.2457 0.2477 REMARK 3 13 2.3400 - 2.2800 1.00 2720 138 0.2552 0.2910 REMARK 3 14 2.2800 - 2.2200 1.00 2674 166 0.2936 0.3137 REMARK 3 15 2.2200 - 2.1700 1.00 2718 127 0.2700 0.2993 REMARK 3 16 2.1700 - 2.1300 1.00 2705 125 0.2841 0.2933 REMARK 3 17 2.1300 - 2.0800 1.00 2720 132 0.2963 0.2928 REMARK 3 18 2.0800 - 2.0400 1.00 2694 147 0.3444 0.3819 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.7022 5.7754 26.9756 REMARK 3 T TENSOR REMARK 3 T11: 0.5673 T22: 0.2258 REMARK 3 T33: 0.2402 T12: 0.0682 REMARK 3 T13: 0.0467 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.7104 L22: 3.7973 REMARK 3 L33: 3.6597 L12: 1.9272 REMARK 3 L13: -0.8855 L23: -1.9698 REMARK 3 S TENSOR REMARK 3 S11: -0.2231 S12: 0.0309 S13: -0.0256 REMARK 3 S21: -0.9247 S22: -0.0152 S23: -0.1895 REMARK 3 S31: 0.2862 S32: 0.3683 S33: 0.1752 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.1113 -28.7860 43.0578 REMARK 3 T TENSOR REMARK 3 T11: 0.3602 T22: 0.1756 REMARK 3 T33: 0.2725 T12: 0.0276 REMARK 3 T13: 0.0404 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.7285 L22: 4.8827 REMARK 3 L33: 2.0106 L12: -2.7986 REMARK 3 L13: 1.2339 L23: -1.1971 REMARK 3 S TENSOR REMARK 3 S11: 0.1462 S12: -0.0572 S13: 0.1971 REMARK 3 S21: -0.7441 S22: -0.0896 S23: -0.2610 REMARK 3 S31: -0.0008 S32: 0.0782 S33: -0.0156 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.6391 3.3316 17.0453 REMARK 3 T TENSOR REMARK 3 T11: 1.1070 T22: 0.2816 REMARK 3 T33: 0.2178 T12: 0.0393 REMARK 3 T13: 0.1277 T23: -0.0572 REMARK 3 L TENSOR REMARK 3 L11: 3.0559 L22: 4.0449 REMARK 3 L33: 4.0815 L12: 1.5602 REMARK 3 L13: -1.2363 L23: -2.9421 REMARK 3 S TENSOR REMARK 3 S11: -0.5570 S12: 0.4271 S13: -0.0444 REMARK 3 S21: -1.9059 S22: 0.2263 S23: -0.1483 REMARK 3 S31: 1.1399 S32: 0.2306 S33: 0.0914 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 576 ) REMARK 3 ORIGIN FOR THE GROUP (A): 84.0550 3.5008 30.7925 REMARK 3 T TENSOR REMARK 3 T11: 0.3641 T22: 0.9591 REMARK 3 T33: 0.7109 T12: 0.2456 REMARK 3 T13: 0.2866 T23: 0.3167 REMARK 3 L TENSOR REMARK 3 L11: 1.6775 L22: 4.3324 REMARK 3 L33: 4.4841 L12: 1.1648 REMARK 3 L13: -0.6606 L23: -2.1250 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: -0.3013 S13: -0.3879 REMARK 3 S21: -0.7904 S22: -0.8624 S23: -1.4706 REMARK 3 S31: 0.3924 S32: 1.8065 S33: 0.2666 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EG3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51319 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 72.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1P49 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, AMMONIUM PHOSPHATE, BOG, TRIS REMARK 280 BUFFER, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 58.59500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -101.48952 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 117.19000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A 603 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 MET A 6 REMARK 465 LYS A 7 REMARK 465 ILE A 8 REMARK 465 PRO A 9 REMARK 465 PHE A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 PHE A 14 REMARK 465 PHE A 15 REMARK 465 LEU A 16 REMARK 465 TRP A 17 REMARK 465 GLU A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 SER A 21 REMARK 465 HIS A 22 REMARK 465 GLN A 577 REMARK 465 ASP A 578 REMARK 465 LYS A 579 REMARK 465 ARG A 580 REMARK 465 LEU A 581 REMARK 465 SER A 582 REMARK 465 ARG A 583 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 800 O HOH A 821 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 543 CD GLU A 543 OE2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 141 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 GLU A 543 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 GLU A 543 CA - CB - CG ANGL. DEV. = 27.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 93 34.10 -97.77 REMARK 500 ALA A 106 50.13 -91.70 REMARK 500 TRP A 135 -70.60 -104.87 REMARK 500 MET A 139 -69.69 -144.49 REMARK 500 LEU A 164 -111.09 -99.49 REMARK 500 VAL A 186 -65.48 -125.12 REMARK 500 ASN A 247 -121.05 54.80 REMARK 500 ASN A 275 39.26 -142.22 REMARK 500 ALA A 292 67.19 64.92 REMARK 500 GLN A 304 -77.53 -74.68 REMARK 500 HIS A 305 63.28 -108.73 REMARK 500 TRP A 384 85.61 -155.93 REMARK 500 ASP A 438 57.04 -91.33 REMARK 500 HIS A 439 55.70 -144.02 REMARK 500 ASN A 447 -123.14 47.10 REMARK 500 HIS A 485 -28.38 77.04 REMARK 500 THR A 516 -44.99 -148.03 REMARK 500 ALA A 518 -70.24 -71.59 REMARK 500 SER A 519 30.42 -91.52 REMARK 500 PRO A 521 22.95 -74.22 REMARK 500 PHE A 523 -74.73 -41.46 REMARK 500 GLN A 571 125.24 -173.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 291 ALA A 292 -128.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 543 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 600 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 OD2 REMARK 620 2 ASP A 36 OD1 101.9 REMARK 620 3 ALS A 75 OS1 103.6 140.0 REMARK 620 4 ALS A 75 OS3 98.4 89.8 56.4 REMARK 620 5 ASP A 342 OD1 86.5 87.0 124.7 174.7 REMARK 620 6 ASP A 342 OD2 82.7 135.7 78.1 133.6 49.0 REMARK 620 7 GLN A 343 OE1 171.0 72.8 84.8 89.1 85.9 95.9 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P49 RELATED DB: PDB DBREF 8EG3 A 1 583 UNP P08842 STS_HUMAN 1 583 SEQADV 8EG3 ALS A 75 UNP P08842 CYS 75 CONFLICT SEQRES 1 A 583 MET PRO LEU ARG LYS MET LYS ILE PRO PHE LEU LEU LEU SEQRES 2 A 583 PHE PHE LEU TRP GLU ALA GLU SER HIS ALA ALA SER ARG SEQRES 3 A 583 PRO ASN ILE ILE LEU VAL MET ALA ASP ASP LEU GLY ILE SEQRES 4 A 583 GLY ASP PRO GLY CYS TYR GLY ASN LYS THR ILE ARG THR SEQRES 5 A 583 PRO ASN ILE ASP ARG LEU ALA SER GLY GLY VAL LYS LEU SEQRES 6 A 583 THR GLN HIS LEU ALA ALA SER PRO LEU ALS THR PRO SER SEQRES 7 A 583 ARG ALA ALA PHE MET THR GLY ARG TYR PRO VAL ARG SER SEQRES 8 A 583 GLY MET ALA SER TRP SER ARG THR GLY VAL PHE LEU PHE SEQRES 9 A 583 THR ALA SER SER GLY GLY LEU PRO THR ASP GLU ILE THR SEQRES 10 A 583 PHE ALA LYS LEU LEU LYS ASP GLN GLY TYR SER THR ALA SEQRES 11 A 583 LEU ILE GLY LYS TRP HIS LEU GLY MET SER CYS HIS SER SEQRES 12 A 583 LYS THR ASP PHE CYS HIS HIS PRO LEU HIS HIS GLY PHE SEQRES 13 A 583 ASN TYR PHE TYR GLY ILE SER LEU THR ASN LEU ARG ASP SEQRES 14 A 583 CYS LYS PRO GLY GLU GLY SER VAL PHE THR THR GLY PHE SEQRES 15 A 583 LYS ARG LEU VAL PHE LEU PRO LEU GLN ILE VAL GLY VAL SEQRES 16 A 583 THR LEU LEU THR LEU ALA ALA LEU ASN CYS LEU GLY LEU SEQRES 17 A 583 LEU HIS VAL PRO LEU GLY VAL PHE PHE SER LEU LEU PHE SEQRES 18 A 583 LEU ALA ALA LEU ILE LEU THR LEU PHE LEU GLY PHE LEU SEQRES 19 A 583 HIS TYR PHE ARG PRO LEU ASN CYS PHE MET MET ARG ASN SEQRES 20 A 583 TYR GLU ILE ILE GLN GLN PRO MET SER TYR ASP ASN LEU SEQRES 21 A 583 THR GLN ARG LEU THR VAL GLU ALA ALA GLN PHE ILE GLN SEQRES 22 A 583 ARG ASN THR GLU THR PRO PHE LEU LEU VAL LEU SER TYR SEQRES 23 A 583 LEU HIS VAL HIS THR ALA LEU PHE SER SER LYS ASP PHE SEQRES 24 A 583 ALA GLY LYS SER GLN HIS GLY VAL TYR GLY ASP ALA VAL SEQRES 25 A 583 GLU GLU MET ASP TRP SER VAL GLY GLN ILE LEU ASN LEU SEQRES 26 A 583 LEU ASP GLU LEU ARG LEU ALA ASN ASP THR LEU ILE TYR SEQRES 27 A 583 PHE THR SER ASP GLN GLY ALA HIS VAL GLU GLU VAL SER SEQRES 28 A 583 SER LYS GLY GLU ILE HIS GLY GLY SER ASN GLY ILE TYR SEQRES 29 A 583 LYS GLY GLY LYS ALA ASN ASN TRP GLU GLY GLY ILE ARG SEQRES 30 A 583 VAL PRO GLY ILE LEU ARG TRP PRO ARG VAL ILE GLN ALA SEQRES 31 A 583 GLY GLN LYS ILE ASP GLU PRO THR SER ASN MET ASP ILE SEQRES 32 A 583 PHE PRO THR VAL ALA LYS LEU ALA GLY ALA PRO LEU PRO SEQRES 33 A 583 GLU ASP ARG ILE ILE ASP GLY ARG ASP LEU MET PRO LEU SEQRES 34 A 583 LEU GLU GLY LYS SER GLN ARG SER ASP HIS GLU PHE LEU SEQRES 35 A 583 PHE HIS TYR CYS ASN ALA TYR LEU ASN ALA VAL ARG TRP SEQRES 36 A 583 HIS PRO GLN ASN SER THR SER ILE TRP LYS ALA PHE PHE SEQRES 37 A 583 PHE THR PRO ASN PHE ASN PRO VAL GLY SER ASN GLY CYS SEQRES 38 A 583 PHE ALA THR HIS VAL CYS PHE CYS PHE GLY SER TYR VAL SEQRES 39 A 583 THR HIS HIS ASP PRO PRO LEU LEU PHE ASP ILE SER LYS SEQRES 40 A 583 ASP PRO ARG GLU ARG ASN PRO LEU THR PRO ALA SER GLU SEQRES 41 A 583 PRO ARG PHE TYR GLU ILE LEU LYS VAL MET GLN GLU ALA SEQRES 42 A 583 ALA ASP ARG HIS THR GLN THR LEU PRO GLU VAL PRO ASP SEQRES 43 A 583 GLN PHE SER TRP ASN ASN PHE LEU TRP LYS PRO TRP LEU SEQRES 44 A 583 GLN LEU CYS CYS PRO SER THR GLY LEU SER CYS GLN CYS SEQRES 45 A 583 ASP ARG GLU LYS GLN ASP LYS ARG LEU SER ARG HET ALS A 75 11 HET CA A 600 1 HET NAG A 601 14 HET NAG A 602 14 HET PO4 A 603 5 HET BOG A 604 20 HET BOG A 605 20 HETNAM ALS (3S)-3-(SULFOOXY)-L-SERINE HETNAM CA CALCIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 1 ALS C3 H7 N O7 S FORMUL 2 CA CA 2+ FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 5 PO4 O4 P 3- FORMUL 6 BOG 2(C14 H28 O6) FORMUL 8 HOH *133(H2 O) HELIX 1 AA1 PRO A 42 GLY A 46 5 5 HELIX 2 AA2 THR A 52 GLY A 61 1 10 HELIX 3 AA3 LEU A 74 GLY A 85 1 12 HELIX 4 AA4 TYR A 87 GLY A 92 5 6 HELIX 5 AA5 THR A 117 ASP A 124 1 8 HELIX 6 AA6 HIS A 150 HIS A 154 5 5 HELIX 7 AA7 LEU A 167 LYS A 171 5 5 HELIX 8 AA8 PHE A 178 VAL A 186 1 9 HELIX 9 AA9 VAL A 186 LEU A 206 1 21 HELIX 10 AB1 PRO A 212 CYS A 242 1 31 HELIX 11 AB2 ASN A 259 ARG A 274 1 16 HELIX 12 AB3 GLY A 306 LEU A 329 1 24 HELIX 13 AB4 TRP A 372 ARG A 377 1 6 HELIX 14 AB5 ASP A 402 GLY A 412 1 11 HELIX 15 AB6 LEU A 426 GLU A 431 1 6 HELIX 16 AB7 PHE A 490 SER A 492 5 3 HELIX 17 AB8 SER A 519 PRO A 521 5 3 HELIX 18 AB9 ARG A 522 GLN A 539 1 18 HELIX 19 AC1 SER A 549 LEU A 554 1 6 HELIX 20 AC2 LYS A 556 GLN A 560 5 5 SHEET 1 AA111 GLN A 392 SER A 399 0 SHEET 2 AA111 VAL A 63 LEU A 69 1 N THR A 66 O ILE A 394 SHEET 3 AA111 GLY A 380 ARG A 383 -1 O GLY A 380 N LEU A 65 SHEET 4 AA111 THR A 335 SER A 341 -1 N ILE A 337 O ARG A 383 SHEET 5 AA111 ASN A 28 ALA A 34 1 N ALA A 34 O THR A 340 SHEET 6 AA111 PHE A 280 SER A 285 1 O LEU A 284 N LEU A 31 SHEET 7 AA111 SER A 128 LYS A 134 1 N ILE A 132 O SER A 285 SHEET 8 AA111 TYR A 158 ILE A 162 1 O TYR A 160 N GLY A 133 SHEET 9 AA111 MET A 244 ARG A 246 -1 O MET A 245 N GLY A 161 SHEET 10 AA111 GLU A 249 GLN A 253 -1 O ILE A 251 N MET A 244 SHEET 11 AA111 CYS A 572 ASP A 573 -1 O CYS A 572 N GLN A 253 SHEET 1 AA2 4 PHE A 441 CYS A 446 0 SHEET 2 AA2 4 TYR A 449 TRP A 455 -1 O TYR A 449 N CYS A 446 SHEET 3 AA2 4 TRP A 464 PRO A 471 -1 O TRP A 464 N TRP A 455 SHEET 4 AA2 4 VAL A 494 ASP A 504 -1 O THR A 495 N THR A 470 SSBOND 1 CYS A 141 CYS A 148 1555 1555 2.04 SSBOND 2 CYS A 170 CYS A 242 1555 1555 2.05 SSBOND 3 CYS A 446 CYS A 489 1555 1555 2.05 SSBOND 4 CYS A 481 CYS A 487 1555 1555 2.00 SSBOND 5 CYS A 562 CYS A 570 1555 1555 2.04 SSBOND 6 CYS A 563 CYS A 572 1555 1555 2.05 LINK ND2 ASN A 47 C1 NAG A 601 1555 1555 1.45 LINK C LEU A 74 N ALS A 75 1555 1555 1.33 LINK C ALS A 75 N THR A 76 1555 1555 1.33 LINK ND2 ASN A 333 C1 NAG A 602 1555 1555 1.45 LINK OD2 ASP A 35 CA CA A 600 1555 1555 2.17 LINK OD1 ASP A 36 CA CA A 600 1555 1555 2.43 LINK OS1 ALS A 75 CA CA A 600 1555 1555 2.73 LINK OS3 ALS A 75 CA CA A 600 1555 1555 2.55 LINK OD1 ASP A 342 CA CA A 600 1555 1555 2.80 LINK OD2 ASP A 342 CA CA A 600 1555 1555 2.45 LINK OE1 GLN A 343 CA CA A 600 1555 1555 2.31 CISPEP 1 GLN A 253 PRO A 254 0 -8.68 CISPEP 2 HIS A 288 VAL A 289 0 -1.33 CISPEP 3 ASP A 498 PRO A 499 0 -4.47 CRYST1 117.190 117.190 102.680 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008533 0.004927 0.000000 0.00000 SCALE2 0.000000 0.009853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009739 0.00000