HEADER VIRAL PROTEIN 14-SEP-22 8EHN TITLE PRRSV-1 PLP2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAPAIN-LIKE PROTEASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ORF1A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PAPAIN-LIKE PROTEASE 2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ORF1A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME SOURCE 3 VIRUS; SOURCE 4 ORGANISM_TAXID: 28344; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME SOURCE 9 VIRUS; SOURCE 10 ORGANISM_TAXID: 28344; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLP2, DUB, DEUBIQUITINATING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.A.BAILEY-ELKIN,B.L.MARK REVDAT 2 03-JAN-24 8EHN 1 JRNL REVDAT 1 06-DEC-23 8EHN 0 JRNL AUTH B.A.BAILEY-ELKIN,R.C.M.KNAAP,A.DE SILVA,I.M.BOEKHOUD,S.MOUS, JRNL AUTH 2 N.VAN VUGHT,M.KHAJEHPOUR,E.VAN DEN BORN,M.KIKKERT,B.L.MARK JRNL TITL DEMONSTRATING THE IMPORTANCE OF PORCINE REPRODUCTIVE AND JRNL TITL 2 RESPIRATORY SYNDROME VIRUS PAPAIN-LIKE PROTEASE 2 JRNL TITL 3 DEUBIQUITINATING ACTIVITY IN VIRAL REPLICATION BY JRNL TITL 4 STRUCTURE-GUIDED MUTAGENESIS. JRNL REF PLOS PATHOG. V. 19 11872 2023 JRNL REFN ESSN 1553-7374 JRNL PMID 38096325 JRNL DOI 10.1371/JOURNAL.PPAT.1011872 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 14038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1565 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3870 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2307 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.17000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : -4.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.339 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.268 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.449 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2387 ; 0.008 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 2185 ; 0.001 ; 0.019 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3279 ; 1.440 ; 1.865 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5049 ; 1.036 ; 2.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 6.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;33.824 ;21.538 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;15.286 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.045 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 357 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2735 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 521 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1221 ; 8.631 ; 5.740 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1217 ; 8.565 ; 5.721 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1519 ;10.763 ; 8.599 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1520 ;10.762 ; 8.600 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1166 ; 9.255 ; 6.323 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1167 ; 9.252 ; 6.330 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1761 ;11.638 ; 9.241 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2596 ;14.493 ;69.928 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2597 ;14.501 ;69.969 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 417 A 566 REMARK 3 ORIGIN FOR THE GROUP (A): 40.5750 32.9770 53.7550 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.0824 REMARK 3 T33: 0.0584 T12: -0.0323 REMARK 3 T13: -0.0584 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 3.0514 L22: 10.4510 REMARK 3 L33: 7.0622 L12: 1.1434 REMARK 3 L13: 1.2873 L23: 2.5669 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: -0.2152 S13: -0.2324 REMARK 3 S21: -0.4821 S22: 0.0747 S23: 0.4932 REMARK 3 S31: 0.0715 S32: -0.6850 S33: -0.0810 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 416 B 570 REMARK 3 ORIGIN FOR THE GROUP (A): 52.9540 38.6830 26.6830 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.0332 REMARK 3 T33: 0.0264 T12: -0.0144 REMARK 3 T13: 0.0356 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 3.2092 L22: 7.3854 REMARK 3 L33: 11.9402 L12: 0.7666 REMARK 3 L13: -2.5967 L23: 3.9464 REMARK 3 S TENSOR REMARK 3 S11: -0.1948 S12: 0.1966 S13: -0.0323 REMARK 3 S21: -0.1797 S22: 0.4055 S23: -0.3234 REMARK 3 S31: 0.5810 S32: 0.1741 S33: -0.2107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 8EHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15677 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 37.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 8.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 2000, 0.35M AMMONIUM ACETATE, REMARK 280 0.1M HEPES 7.5, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.36950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.36950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.74950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.17350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.74950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.17350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.36950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.74950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.17350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.36950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.74950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.17350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 385 REMARK 465 ALA A 386 REMARK 465 ALA A 387 REMARK 465 GLY A 388 REMARK 465 LYS A 389 REMARK 465 ARG A 390 REMARK 465 ALA A 391 REMARK 465 ARG A 392 REMARK 465 ALA A 393 REMARK 465 LYS A 394 REMARK 465 ARG A 395 REMARK 465 ALA A 396 REMARK 465 THR A 397 REMARK 465 LYS A 398 REMARK 465 SER A 399 REMARK 465 GLY A 400 REMARK 465 LYS A 401 REMARK 465 ASP A 402 REMARK 465 SER A 403 REMARK 465 ALA A 404 REMARK 465 LEU A 405 REMARK 465 ALA A 406 REMARK 465 PRO A 407 REMARK 465 LYS A 408 REMARK 465 ILE A 409 REMARK 465 ALA A 410 REMARK 465 PRO A 411 REMARK 465 PRO A 412 REMARK 465 VAL A 413 REMARK 465 PRO A 414 REMARK 465 THR A 415 REMARK 465 CYS A 416 REMARK 465 PRO A 567 REMARK 465 GLN A 568 REMARK 465 GLU A 569 REMARK 465 PHE A 570 REMARK 465 TRP A 571 REMARK 465 THR A 572 REMARK 465 LEU A 573 REMARK 465 ASP A 574 REMARK 465 LYS A 575 REMARK 465 MET A 576 REMARK 465 LEU A 577 REMARK 465 THR A 578 REMARK 465 GLY A 579 REMARK 465 SER A 580 REMARK 465 SER A 581 REMARK 465 GLY A 582 REMARK 465 HIS A 583 REMARK 465 HIS A 584 REMARK 465 HIS A 585 REMARK 465 HIS A 586 REMARK 465 HIS A 587 REMARK 465 HIS A 588 REMARK 465 GLY B 385 REMARK 465 ALA B 386 REMARK 465 ALA B 387 REMARK 465 GLY B 388 REMARK 465 LYS B 389 REMARK 465 ARG B 390 REMARK 465 ALA B 391 REMARK 465 ARG B 392 REMARK 465 ALA B 393 REMARK 465 LYS B 394 REMARK 465 ARG B 395 REMARK 465 ALA B 396 REMARK 465 THR B 397 REMARK 465 LYS B 398 REMARK 465 SER B 399 REMARK 465 GLY B 400 REMARK 465 LYS B 401 REMARK 465 ASP B 402 REMARK 465 SER B 403 REMARK 465 ALA B 404 REMARK 465 LEU B 405 REMARK 465 ALA B 406 REMARK 465 PRO B 407 REMARK 465 LYS B 408 REMARK 465 ILE B 409 REMARK 465 ALA B 410 REMARK 465 PRO B 411 REMARK 465 PRO B 412 REMARK 465 VAL B 413 REMARK 465 PRO B 414 REMARK 465 THR B 415 REMARK 465 TRP B 571 REMARK 465 THR B 572 REMARK 465 LEU B 573 REMARK 465 ASP B 574 REMARK 465 LYS B 575 REMARK 465 MET B 576 REMARK 465 LEU B 577 REMARK 465 THR B 578 REMARK 465 GLY B 579 REMARK 465 SER B 580 REMARK 465 SER B 581 REMARK 465 GLY B 582 REMARK 465 HIS B 583 REMARK 465 HIS B 584 REMARK 465 HIS B 585 REMARK 465 HIS B 586 REMARK 465 HIS B 587 REMARK 465 HIS B 588 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 481 -73.52 -121.87 REMARK 500 ASN A 482 -88.48 -109.46 REMARK 500 MET A 507 115.63 27.89 REMARK 500 LYS A 537 -62.91 -24.50 REMARK 500 ASP A 564 99.19 -164.33 REMARK 500 ASP B 459 3.71 98.09 REMARK 500 ARG B 481 -60.80 -120.75 REMARK 500 ASN B 482 -88.35 -108.10 REMARK 500 LYS B 537 -64.97 -18.88 REMARK 500 ALA B 539 -56.38 53.71 REMARK 500 ASP B 564 107.05 -174.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 709 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A 710 DISTANCE = 8.69 ANGSTROMS REMARK 525 HOH B 708 DISTANCE = 7.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 485 SG REMARK 620 2 CYS A 516 SG 106.0 REMARK 620 3 CYS A 521 SG 108.8 108.0 REMARK 620 4 CYS A 525 SG 118.5 106.0 109.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 485 SG REMARK 620 2 CYS B 516 SG 107.6 REMARK 620 3 CYS B 521 SG 106.0 110.4 REMARK 620 4 CYS B 525 SG 117.9 106.3 108.5 REMARK 620 N 1 2 3 DBREF 8EHN A 385 578 UNP W0NX70 W0NX70_PRRSV 385 578 DBREF 8EHN B 385 578 UNP W0NX70 W0NX70_PRRSV 385 578 SEQADV 8EHN THR A 397 UNP W0NX70 ALA 397 CONFLICT SEQADV 8EHN GLY A 400 UNP W0NX70 GLU 400 CONFLICT SEQADV 8EHN LEU A 405 UNP W0NX70 PRO 405 CONFLICT SEQADV 8EHN ALA A 406 UNP W0NX70 THR 406 CONFLICT SEQADV 8EHN ILE A 409 UNP W0NX70 VAL 409 CONFLICT SEQADV 8EHN PRO A 411 UNP W0NX70 LEU 411 CONFLICT SEQADV 8EHN VAL A 438 UNP W0NX70 MET 438 CONFLICT SEQADV 8EHN PRO A 451 UNP W0NX70 THR 451 CONFLICT SEQADV 8EHN ALA A 467 UNP W0NX70 VAL 467 CONFLICT SEQADV 8EHN SER A 513 UNP W0NX70 PRO 513 CONFLICT SEQADV 8EHN ASP A 564 UNP W0NX70 ASN 564 CONFLICT SEQADV 8EHN GLY A 579 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN SER A 580 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN SER A 581 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN GLY A 582 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS A 583 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS A 584 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS A 585 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS A 586 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS A 587 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS A 588 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN THR B 397 UNP W0NX70 ALA 397 CONFLICT SEQADV 8EHN GLY B 400 UNP W0NX70 GLU 400 CONFLICT SEQADV 8EHN LEU B 405 UNP W0NX70 PRO 405 CONFLICT SEQADV 8EHN ALA B 406 UNP W0NX70 THR 406 CONFLICT SEQADV 8EHN ILE B 409 UNP W0NX70 VAL 409 CONFLICT SEQADV 8EHN PRO B 411 UNP W0NX70 LEU 411 CONFLICT SEQADV 8EHN VAL B 438 UNP W0NX70 MET 438 CONFLICT SEQADV 8EHN PRO B 451 UNP W0NX70 THR 451 CONFLICT SEQADV 8EHN ALA B 467 UNP W0NX70 VAL 467 CONFLICT SEQADV 8EHN SER B 513 UNP W0NX70 PRO 513 CONFLICT SEQADV 8EHN ASP B 564 UNP W0NX70 ASN 564 CONFLICT SEQADV 8EHN GLY B 579 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN SER B 580 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN SER B 581 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN GLY B 582 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS B 583 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS B 584 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS B 585 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS B 586 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS B 587 UNP W0NX70 EXPRESSION TAG SEQADV 8EHN HIS B 588 UNP W0NX70 EXPRESSION TAG SEQRES 1 A 204 GLY ALA ALA GLY LYS ARG ALA ARG ALA LYS ARG ALA THR SEQRES 2 A 204 LYS SER GLY LYS ASP SER ALA LEU ALA PRO LYS ILE ALA SEQRES 3 A 204 PRO PRO VAL PRO THR CYS GLY ILE THR THR TYR SER PRO SEQRES 4 A 204 PRO THR ASP GLY SER CYS GLY TRP HIS VAL LEU ALA ALA SEQRES 5 A 204 ILE VAL ASN ARG MET ILE ASN GLY ASP PHE THR SER PRO SEQRES 6 A 204 LEU PRO GLN TYR ASN ARG PRO GLU ASP ASP TRP ALA SER SEQRES 7 A 204 ASP TYR ASP LEU ALA GLN ALA ILE GLN CYS LEU GLN LEU SEQRES 8 A 204 PRO ALA THR VAL VAL ARG ASN ARG ALA CYS PRO ASN ALA SEQRES 9 A 204 LYS TYR LEU ILE LYS LEU ASN GLY VAL HIS TRP GLU VAL SEQRES 10 A 204 GLU VAL ARG SER GLY MET ALA PRO ARG SER LEU SER ARG SEQRES 11 A 204 GLU CYS VAL VAL GLY VAL CYS SER GLU GLY CYS VAL ALA SEQRES 12 A 204 PRO PRO TYR PRO ALA ASP GLY LEU PRO LYS ARG ALA LEU SEQRES 13 A 204 GLU ALA LEU ALA SER ALA TYR ARG LEU PRO SER ASP CYS SEQRES 14 A 204 VAL SER SER GLY ILE ALA ASP PHE LEU ALA ASP PRO PRO SEQRES 15 A 204 PRO GLN GLU PHE TRP THR LEU ASP LYS MET LEU THR GLY SEQRES 16 A 204 SER SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 204 GLY ALA ALA GLY LYS ARG ALA ARG ALA LYS ARG ALA THR SEQRES 2 B 204 LYS SER GLY LYS ASP SER ALA LEU ALA PRO LYS ILE ALA SEQRES 3 B 204 PRO PRO VAL PRO THR CYS GLY ILE THR THR TYR SER PRO SEQRES 4 B 204 PRO THR ASP GLY SER OCS GLY TRP HIS VAL LEU ALA ALA SEQRES 5 B 204 ILE VAL ASN ARG MET ILE ASN GLY ASP PHE THR SER PRO SEQRES 6 B 204 LEU PRO GLN TYR ASN ARG PRO GLU ASP ASP TRP ALA SER SEQRES 7 B 204 ASP TYR ASP LEU ALA GLN ALA ILE GLN CYS LEU GLN LEU SEQRES 8 B 204 PRO ALA THR VAL VAL ARG ASN ARG ALA CYS PRO ASN ALA SEQRES 9 B 204 LYS TYR LEU ILE LYS LEU ASN GLY VAL HIS TRP GLU VAL SEQRES 10 B 204 GLU VAL ARG SER GLY MET ALA PRO ARG SER LEU SER ARG SEQRES 11 B 204 GLU CYS VAL VAL GLY VAL CYS SER GLU GLY CYS VAL ALA SEQRES 12 B 204 PRO PRO TYR PRO ALA ASP GLY LEU PRO LYS ARG ALA LEU SEQRES 13 B 204 GLU ALA LEU ALA SER ALA TYR ARG LEU PRO SER ASP CYS SEQRES 14 B 204 VAL SER SER GLY ILE ALA ASP PHE LEU ALA ASP PRO PRO SEQRES 15 B 204 PRO GLN GLU PHE TRP THR LEU ASP LYS MET LEU THR GLY SEQRES 16 B 204 SER SER GLY HIS HIS HIS HIS HIS HIS MODRES 8EHN OCS B 429 CYS MODIFIED RESIDUE HET OCS B 429 9 HET ZN A 601 1 HET ACT A 602 4 HET ACT A 603 4 HET ACT A 604 4 HET ZN B 601 1 HETNAM OCS CYSTEINESULFONIC ACID HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 2 OCS C3 H7 N O5 S FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 8 HOH *18(H2 O) HELIX 1 AA1 SER A 428 GLY A 444 1 17 HELIX 2 AA2 PRO A 456 TRP A 460 5 5 HELIX 3 AA3 SER A 462 GLN A 474 1 13 HELIX 4 AA4 SER A 513 GLY A 519 1 7 HELIX 5 AA5 ARG A 538 TYR A 547 1 10 HELIX 6 AA6 PRO A 550 ASP A 552 5 3 HELIX 7 AA7 CYS A 553 ASP A 564 1 12 HELIX 8 AA8 SER B 428 GLY B 444 1 17 HELIX 9 AA9 SER B 462 GLN B 474 1 13 HELIX 10 AB1 SER B 513 GLY B 519 1 7 HELIX 11 AB2 ALA B 539 TYR B 547 1 9 HELIX 12 AB3 PRO B 550 ASP B 552 5 3 HELIX 13 AB4 CYS B 553 ASP B 564 1 12 SHEET 1 AA1 8 ALA A 477 VAL A 479 0 SHEET 2 AA1 8 TYR A 490 ASN A 495 1 O ILE A 492 N THR A 478 SHEET 3 AA1 8 HIS A 498 ARG A 504 -1 O GLU A 500 N LYS A 493 SHEET 4 AA1 8 ILE A 418 SER A 422 -1 N TYR A 421 O VAL A 501 SHEET 5 AA1 8 ILE B 418 SER B 422 -1 O SER B 422 N ILE A 418 SHEET 6 AA1 8 HIS B 498 ARG B 504 -1 O VAL B 501 N TYR B 421 SHEET 7 AA1 8 TYR B 490 ASN B 495 -1 N LYS B 493 O GLU B 500 SHEET 8 AA1 8 ALA B 477 VAL B 479 1 N THR B 478 O ILE B 492 LINK C SER B 428 N OCS B 429 1555 1555 1.34 LINK C OCS B 429 N GLY B 430 1555 1555 1.34 LINK SG CYS A 485 ZN ZN A 601 1555 1555 2.34 LINK SG CYS A 516 ZN ZN A 601 1555 1555 2.30 LINK SG CYS A 521 ZN ZN A 601 1555 1555 2.30 LINK SG CYS A 525 ZN ZN A 601 1555 1555 2.36 LINK SG CYS B 485 ZN ZN B 601 1555 1555 2.34 LINK SG CYS B 516 ZN ZN B 601 1555 1555 2.32 LINK SG CYS B 521 ZN ZN B 601 1555 1555 2.33 LINK SG CYS B 525 ZN ZN B 601 1555 1555 2.36 CRYST1 67.499 102.347 100.739 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014815 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009927 0.00000