HEADER PROTEIN BINDING 14-SEP-22 8EHV TITLE KELCH DOMAIN OF HUMAN KEAP1 BOUND TO NRF2 CYCLIC PEPTIDE, C[DHA- TITLE 2 GDPET(BALA)E] CAVEAT 8EHV B3A P 76 HAS WRONG CHIRALITY AT ATOM CB RESIDUES BAL P 81 CAVEAT 2 8EHV AND GLU P 82 THAT ARE NEXT TO EACH OTHER IN THE SAMPLE CAVEAT 3 8EHV SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE BETWEEN C AND N CAVEAT 4 8EHV IS 1.16. COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH-LIKE ECH-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYTOSOLIC INHIBITOR OF NRF2,INRF2,KELCH-LIKE PROTEIN 19; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CYCLIC PEPTIDE C[DHA-GDPET(BALA)E; COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KEAP1, INRF2, KIAA0132, KLHL19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PROTEIN-PROTEIN INTERACTION, INHIBITOR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.N.MUELLERS,K.N.ALLEN REVDAT 2 15-NOV-23 8EHV 1 REMARK ATOM REVDAT 1 20-SEP-23 8EHV 0 JRNL AUTH S.N.MUELLERS,K.N.ALLEN,A.WHITTY JRNL TITL MACHINE-LEARNING ANALYSIS OF MOLECULAR DYNAMICS SIMULATIONS JRNL TITL 2 TO ELUCIDATE THE EFFECT OF STRAIN AND PREORGANIZATION ON JRNL TITL 3 CONFORMATIONAL MODES OF MOTION IN CYCLIC PEPTIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 34135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5800 - 5.5000 1.00 2366 150 0.2197 0.2714 REMARK 3 2 5.5000 - 4.3700 1.00 2336 145 0.1599 0.1846 REMARK 3 3 4.3700 - 3.8200 1.00 2319 145 0.1669 0.2195 REMARK 3 4 3.8200 - 3.4700 1.00 2315 149 0.1885 0.2528 REMARK 3 5 3.4700 - 3.2200 1.00 2304 144 0.2106 0.2437 REMARK 3 6 3.2200 - 3.0300 1.00 2316 140 0.2134 0.2683 REMARK 3 7 3.0300 - 2.8800 1.00 2284 143 0.2154 0.2687 REMARK 3 8 2.8800 - 2.7500 1.00 2296 141 0.2234 0.2688 REMARK 3 9 2.7500 - 2.6500 1.00 2304 139 0.2220 0.2798 REMARK 3 10 2.6500 - 2.5600 1.00 2309 150 0.2291 0.2944 REMARK 3 11 2.5600 - 2.4800 1.00 2296 140 0.2383 0.3322 REMARK 3 12 2.4800 - 2.4100 1.00 2283 137 0.2576 0.3349 REMARK 3 13 2.4100 - 2.3400 1.00 2289 145 0.2537 0.2966 REMARK 3 14 2.3400 - 2.2900 0.92 2122 128 0.2714 0.3354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.319 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.808 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 4523 REMARK 3 ANGLE : 1.750 6157 REMARK 3 CHIRALITY : 0.097 660 REMARK 3 PLANARITY : 0.010 811 REMARK 3 DIHEDRAL : 21.344 1607 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 29.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.89200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5WFV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2-1.6 M AMMONIUM SULFATE, 100 MM BIS REMARK 280 -TRIS PH 6.5, 0.2-0.8% PEG-550 MONOMETHYL ETHER, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.17450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.42450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.17450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.42450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 289 REMARK 465 GLY A 290 REMARK 465 SER A 291 REMARK 465 SER A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 SER A 299 REMARK 465 SER A 300 REMARK 465 GLY A 301 REMARK 465 GLY A 302 REMARK 465 GLU A 303 REMARK 465 ASN A 304 REMARK 465 LEU A 305 REMARK 465 TYR A 306 REMARK 465 PHE A 307 REMARK 465 GLN A 308 REMARK 465 GLY A 309 REMARK 465 HIS A 310 REMARK 465 MET A 311 REMARK 465 LYS A 312 REMARK 465 PRO A 313 REMARK 465 THR A 314 REMARK 465 GLN A 315 REMARK 465 VAL A 316 REMARK 465 MET A 317 REMARK 465 PRO A 318 REMARK 465 SER A 319 REMARK 465 ARG A 320 REMARK 465 ALA A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 VAL A 324 REMARK 465 GLY A 325 REMARK 465 LYS A 615 REMARK 465 GLN A 616 REMARK 465 ILE A 617 REMARK 465 ASP A 618 REMARK 465 GLN A 619 REMARK 465 GLN A 620 REMARK 465 ASN A 621 REMARK 465 SER A 622 REMARK 465 THR A 623 REMARK 465 SER A 624 REMARK 465 MET B 289 REMARK 465 GLY B 290 REMARK 465 SER B 291 REMARK 465 SER B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 465 SER B 299 REMARK 465 SER B 300 REMARK 465 GLY B 301 REMARK 465 GLY B 302 REMARK 465 GLU B 303 REMARK 465 ASN B 304 REMARK 465 LEU B 305 REMARK 465 TYR B 306 REMARK 465 PHE B 307 REMARK 465 GLN B 308 REMARK 465 GLY B 309 REMARK 465 HIS B 310 REMARK 465 MET B 311 REMARK 465 LYS B 312 REMARK 465 PRO B 313 REMARK 465 THR B 314 REMARK 465 GLN B 315 REMARK 465 VAL B 316 REMARK 465 MET B 317 REMARK 465 PRO B 318 REMARK 465 SER B 319 REMARK 465 ARG B 320 REMARK 465 ALA B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 VAL B 324 REMARK 465 GLY B 325 REMARK 465 ARG B 326 REMARK 465 PRO B 347 REMARK 465 SER B 348 REMARK 465 ASP B 349 REMARK 465 GLY B 350 REMARK 465 MET B 610 REMARK 465 GLU B 611 REMARK 465 PRO B 612 REMARK 465 SER B 613 REMARK 465 ARG B 614 REMARK 465 LYS B 615 REMARK 465 GLN B 616 REMARK 465 ILE B 617 REMARK 465 ASP B 618 REMARK 465 GLN B 619 REMARK 465 GLN B 620 REMARK 465 ASN B 621 REMARK 465 SER B 622 REMARK 465 THR B 623 REMARK 465 SER B 624 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 767 O HOH A 816 1.97 REMARK 500 O HOH B 740 O HOH B 747 1.98 REMARK 500 N B3A P 76 O GLU P 82 2.08 REMARK 500 CA B3A P 76 C GLU P 82 2.09 REMARK 500 OH TYR B 490 OD1 ASN B 495 2.10 REMARK 500 O ASP B 422 O HOH B 701 2.11 REMARK 500 CA B3A P 76 O GLU P 82 2.17 REMARK 500 OH TYR B 396 ND2 ASN B 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 517 NH1 ARG B 470 2555 0.37 REMARK 500 CG ASN A 517 NH1 ARG B 470 2555 1.54 REMARK 500 OD1 ASN A 517 CZ ARG B 470 2555 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 391 CB SER A 391 OG 0.093 REMARK 500 GLU A 535 CG GLU A 535 CD 0.091 REMARK 500 BAL P 81 C GLU P 82 N -0.175 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 380 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP B 538 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 B3A P 76 CA - C - N ANGL. DEV. = -21.0 DEGREES REMARK 500 GLU P 82 C - N - CA ANGL. DEV. = 31.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 337 147.61 179.13 REMARK 500 VAL A 453 -169.70 -119.98 REMARK 500 THR A 481 -46.24 -132.59 REMARK 500 HIS A 516 -90.19 50.08 REMARK 500 GLN A 528 -48.93 -136.48 REMARK 500 PHE B 335 80.03 -159.72 REMARK 500 ARG B 336 -6.63 76.22 REMARK 500 ASN B 387 63.15 -159.34 REMARK 500 ASP B 422 32.94 70.70 REMARK 500 VAL B 453 -159.67 -87.74 REMARK 500 THR B 481 -51.16 -137.44 REMARK 500 HIS B 516 -114.97 55.62 REMARK 500 GLN B 528 -39.38 -135.81 REMARK 500 VAL B 547 -164.65 -110.54 REMARK 500 ARG B 554 144.30 -173.48 REMARK 500 GLU B 593 109.85 -56.85 REMARK 500 ASP P 77 123.12 -29.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR P 80 BAL P 81 -119.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 609 11.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 753 DISTANCE = 6.18 ANGSTROMS DBREF 8EHV A 312 624 UNP Q14145 KEAP1_HUMAN 312 624 DBREF 8EHV B 312 624 UNP Q14145 KEAP1_HUMAN 312 624 DBREF 8EHV P 76 82 PDB 8EHV 8EHV 76 82 SEQADV 8EHV MET A 289 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLY A 290 UNP Q14145 EXPRESSION TAG SEQADV 8EHV SER A 291 UNP Q14145 EXPRESSION TAG SEQADV 8EHV SER A 292 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS A 293 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS A 294 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS A 295 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS A 296 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS A 297 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS A 298 UNP Q14145 EXPRESSION TAG SEQADV 8EHV SER A 299 UNP Q14145 EXPRESSION TAG SEQADV 8EHV SER A 300 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLY A 301 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLY A 302 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLU A 303 UNP Q14145 EXPRESSION TAG SEQADV 8EHV ASN A 304 UNP Q14145 EXPRESSION TAG SEQADV 8EHV LEU A 305 UNP Q14145 EXPRESSION TAG SEQADV 8EHV TYR A 306 UNP Q14145 EXPRESSION TAG SEQADV 8EHV PHE A 307 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLN A 308 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLY A 309 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS A 310 UNP Q14145 EXPRESSION TAG SEQADV 8EHV MET A 311 UNP Q14145 EXPRESSION TAG SEQADV 8EHV SER A 319 UNP Q14145 CYS 319 CONFLICT SEQADV 8EHV ALA A 540 UNP Q14145 GLU 540 ENGINEERED MUTATION SEQADV 8EHV ALA A 542 UNP Q14145 GLU 542 ENGINEERED MUTATION SEQADV 8EHV SER A 613 UNP Q14145 CYS 613 ENGINEERED MUTATION SEQADV 8EHV SER A 622 UNP Q14145 CYS 622 CONFLICT SEQADV 8EHV SER A 624 UNP Q14145 CYS 624 CONFLICT SEQADV 8EHV MET B 289 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLY B 290 UNP Q14145 EXPRESSION TAG SEQADV 8EHV SER B 291 UNP Q14145 EXPRESSION TAG SEQADV 8EHV SER B 292 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS B 293 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS B 294 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS B 295 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS B 296 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS B 297 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS B 298 UNP Q14145 EXPRESSION TAG SEQADV 8EHV SER B 299 UNP Q14145 EXPRESSION TAG SEQADV 8EHV SER B 300 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLY B 301 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLY B 302 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLU B 303 UNP Q14145 EXPRESSION TAG SEQADV 8EHV ASN B 304 UNP Q14145 EXPRESSION TAG SEQADV 8EHV LEU B 305 UNP Q14145 EXPRESSION TAG SEQADV 8EHV TYR B 306 UNP Q14145 EXPRESSION TAG SEQADV 8EHV PHE B 307 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLN B 308 UNP Q14145 EXPRESSION TAG SEQADV 8EHV GLY B 309 UNP Q14145 EXPRESSION TAG SEQADV 8EHV HIS B 310 UNP Q14145 EXPRESSION TAG SEQADV 8EHV MET B 311 UNP Q14145 EXPRESSION TAG SEQADV 8EHV SER B 319 UNP Q14145 CYS 319 CONFLICT SEQADV 8EHV ALA B 540 UNP Q14145 GLU 540 ENGINEERED MUTATION SEQADV 8EHV ALA B 542 UNP Q14145 GLU 542 ENGINEERED MUTATION SEQADV 8EHV SER B 613 UNP Q14145 CYS 613 ENGINEERED MUTATION SEQADV 8EHV SER B 622 UNP Q14145 CYS 622 CONFLICT SEQADV 8EHV SER B 624 UNP Q14145 CYS 624 CONFLICT SEQRES 1 A 336 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 336 GLY GLU ASN LEU TYR PHE GLN GLY HIS MET LYS PRO THR SEQRES 3 A 336 GLN VAL MET PRO SER ARG ALA PRO LYS VAL GLY ARG LEU SEQRES 4 A 336 ILE TYR THR ALA GLY GLY TYR PHE ARG GLN SER LEU SER SEQRES 5 A 336 TYR LEU GLU ALA TYR ASN PRO SER ASP GLY THR TRP LEU SEQRES 6 A 336 ARG LEU ALA ASP LEU GLN VAL PRO ARG SER GLY LEU ALA SEQRES 7 A 336 GLY CYS VAL VAL GLY GLY LEU LEU TYR ALA VAL GLY GLY SEQRES 8 A 336 ARG ASN ASN SER PRO ASP GLY ASN THR ASP SER SER ALA SEQRES 9 A 336 LEU ASP CYS TYR ASN PRO MET THR ASN GLN TRP SER PRO SEQRES 10 A 336 CYS ALA PRO MET SER VAL PRO ARG ASN ARG ILE GLY VAL SEQRES 11 A 336 GLY VAL ILE ASP GLY HIS ILE TYR ALA VAL GLY GLY SER SEQRES 12 A 336 HIS GLY CYS ILE HIS HIS ASN SER VAL GLU ARG TYR GLU SEQRES 13 A 336 PRO GLU ARG ASP GLU TRP HIS LEU VAL ALA PRO MET LEU SEQRES 14 A 336 THR ARG ARG ILE GLY VAL GLY VAL ALA VAL LEU ASN ARG SEQRES 15 A 336 LEU LEU TYR ALA VAL GLY GLY PHE ASP GLY THR ASN ARG SEQRES 16 A 336 LEU ASN SER ALA GLU CYS TYR TYR PRO GLU ARG ASN GLU SEQRES 17 A 336 TRP ARG MET ILE THR ALA MET ASN THR ILE ARG SER GLY SEQRES 18 A 336 ALA GLY VAL CYS VAL LEU HIS ASN CYS ILE TYR ALA ALA SEQRES 19 A 336 GLY GLY TYR ASP GLY GLN ASP GLN LEU ASN SER VAL GLU SEQRES 20 A 336 ARG TYR ASP VAL ALA THR ALA THR TRP THR PHE VAL ALA SEQRES 21 A 336 PRO MET LYS HIS ARG ARG SER ALA LEU GLY ILE THR VAL SEQRES 22 A 336 HIS GLN GLY ARG ILE TYR VAL LEU GLY GLY TYR ASP GLY SEQRES 23 A 336 HIS THR PHE LEU ASP SER VAL GLU CYS TYR ASP PRO ASP SEQRES 24 A 336 THR ASP THR TRP SER GLU VAL THR ARG MET THR SER GLY SEQRES 25 A 336 ARG SER GLY VAL GLY VAL ALA VAL THR MET GLU PRO SER SEQRES 26 A 336 ARG LYS GLN ILE ASP GLN GLN ASN SER THR SER SEQRES 1 B 336 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 336 GLY GLU ASN LEU TYR PHE GLN GLY HIS MET LYS PRO THR SEQRES 3 B 336 GLN VAL MET PRO SER ARG ALA PRO LYS VAL GLY ARG LEU SEQRES 4 B 336 ILE TYR THR ALA GLY GLY TYR PHE ARG GLN SER LEU SER SEQRES 5 B 336 TYR LEU GLU ALA TYR ASN PRO SER ASP GLY THR TRP LEU SEQRES 6 B 336 ARG LEU ALA ASP LEU GLN VAL PRO ARG SER GLY LEU ALA SEQRES 7 B 336 GLY CYS VAL VAL GLY GLY LEU LEU TYR ALA VAL GLY GLY SEQRES 8 B 336 ARG ASN ASN SER PRO ASP GLY ASN THR ASP SER SER ALA SEQRES 9 B 336 LEU ASP CYS TYR ASN PRO MET THR ASN GLN TRP SER PRO SEQRES 10 B 336 CYS ALA PRO MET SER VAL PRO ARG ASN ARG ILE GLY VAL SEQRES 11 B 336 GLY VAL ILE ASP GLY HIS ILE TYR ALA VAL GLY GLY SER SEQRES 12 B 336 HIS GLY CYS ILE HIS HIS ASN SER VAL GLU ARG TYR GLU SEQRES 13 B 336 PRO GLU ARG ASP GLU TRP HIS LEU VAL ALA PRO MET LEU SEQRES 14 B 336 THR ARG ARG ILE GLY VAL GLY VAL ALA VAL LEU ASN ARG SEQRES 15 B 336 LEU LEU TYR ALA VAL GLY GLY PHE ASP GLY THR ASN ARG SEQRES 16 B 336 LEU ASN SER ALA GLU CYS TYR TYR PRO GLU ARG ASN GLU SEQRES 17 B 336 TRP ARG MET ILE THR ALA MET ASN THR ILE ARG SER GLY SEQRES 18 B 336 ALA GLY VAL CYS VAL LEU HIS ASN CYS ILE TYR ALA ALA SEQRES 19 B 336 GLY GLY TYR ASP GLY GLN ASP GLN LEU ASN SER VAL GLU SEQRES 20 B 336 ARG TYR ASP VAL ALA THR ALA THR TRP THR PHE VAL ALA SEQRES 21 B 336 PRO MET LYS HIS ARG ARG SER ALA LEU GLY ILE THR VAL SEQRES 22 B 336 HIS GLN GLY ARG ILE TYR VAL LEU GLY GLY TYR ASP GLY SEQRES 23 B 336 HIS THR PHE LEU ASP SER VAL GLU CYS TYR ASP PRO ASP SEQRES 24 B 336 THR ASP THR TRP SER GLU VAL THR ARG MET THR SER GLY SEQRES 25 B 336 ARG SER GLY VAL GLY VAL ALA VAL THR MET GLU PRO SER SEQRES 26 B 336 ARG LYS GLN ILE ASP GLN GLN ASN SER THR SER SEQRES 1 P 7 B3A ASP PRO GLU THR BAL GLU HET B3A P 76 6 HET BAL P 81 5 HETNAM B3A (3S)-3-AMINOBUTANOIC ACID HETNAM BAL BETA-ALANINE FORMUL 3 B3A C4 H9 N O2 FORMUL 3 BAL C3 H7 N O2 FORMUL 4 HOH *190(H2 O) HELIX 1 AA1 PRO A 445 ASP A 448 5 4 SHEET 1 AA1 4 TRP A 352 ARG A 354 0 SHEET 2 AA1 4 LEU A 342 TYR A 345 -1 N ALA A 344 O LEU A 353 SHEET 3 AA1 4 LEU A 327 ALA A 331 -1 N ILE A 328 O TYR A 345 SHEET 4 AA1 4 GLY A 605 THR A 609 -1 O GLY A 605 N ALA A 331 SHEET 1 AA2 4 ALA A 366 VAL A 370 0 SHEET 2 AA2 4 LEU A 373 VAL A 377 -1 O TYR A 375 N CYS A 368 SHEET 3 AA2 4 LEU A 393 ASN A 397 -1 O ASP A 394 N ALA A 376 SHEET 4 AA2 4 GLN A 402 PRO A 405 -1 O SER A 404 N CYS A 395 SHEET 1 AA3 2 ARG A 380 SER A 383 0 SHEET 2 AA3 2 GLY A 386 ASP A 389 -1 O THR A 388 N ASN A 381 SHEET 1 AA4 4 GLY A 417 ILE A 421 0 SHEET 2 AA4 4 HIS A 424 VAL A 428 -1 O VAL A 428 N GLY A 417 SHEET 3 AA4 4 VAL A 440 GLU A 444 -1 O TYR A 443 N ILE A 425 SHEET 4 AA4 4 GLU A 449 LEU A 452 -1 O HIS A 451 N ARG A 442 SHEET 1 AA5 2 SER A 431 HIS A 432 0 SHEET 2 AA5 2 ILE A 435 HIS A 436 -1 O ILE A 435 N HIS A 432 SHEET 1 AA6 4 GLY A 464 LEU A 468 0 SHEET 2 AA6 4 LEU A 471 PHE A 478 -1 O TYR A 473 N ALA A 466 SHEET 3 AA6 4 ARG A 483 TYR A 491 -1 O TYR A 490 N LEU A 472 SHEET 4 AA6 4 GLU A 496 ILE A 500 -1 O ARG A 498 N CYS A 489 SHEET 1 AA7 4 GLY A 511 LEU A 515 0 SHEET 2 AA7 4 CYS A 518 ALA A 522 -1 O CYS A 518 N LEU A 515 SHEET 3 AA7 4 VAL A 534 ASP A 538 -1 O TYR A 537 N ILE A 519 SHEET 4 AA7 4 THR A 543 VAL A 547 -1 O VAL A 547 N VAL A 534 SHEET 1 AA8 4 GLY A 558 HIS A 562 0 SHEET 2 AA8 4 ARG A 565 LEU A 569 -1 O TYR A 567 N THR A 560 SHEET 3 AA8 4 SER A 580 ASP A 585 -1 O TYR A 584 N ILE A 566 SHEET 4 AA8 4 THR A 590 ARG A 596 -1 O THR A 590 N ASP A 585 SHEET 1 AA9 4 LEU B 353 ARG B 354 0 SHEET 2 AA9 4 LEU B 342 TYR B 345 -1 N ALA B 344 O LEU B 353 SHEET 3 AA9 4 ILE B 328 ALA B 331 -1 N THR B 330 O GLU B 343 SHEET 4 AA9 4 GLY B 605 VAL B 608 -1 O GLY B 605 N ALA B 331 SHEET 1 AB1 4 ALA B 366 VAL B 370 0 SHEET 2 AB1 4 LEU B 373 VAL B 377 -1 O TYR B 375 N CYS B 368 SHEET 3 AB1 4 LEU B 393 TYR B 396 -1 O ASP B 394 N ALA B 376 SHEET 4 AB1 4 TRP B 403 CYS B 406 -1 O CYS B 406 N LEU B 393 SHEET 1 AB2 2 ARG B 380 SER B 383 0 SHEET 2 AB2 2 GLY B 386 ASP B 389 -1 O GLY B 386 N SER B 383 SHEET 1 AB3 4 GLY B 417 ILE B 421 0 SHEET 2 AB3 4 HIS B 424 VAL B 428 -1 O VAL B 428 N GLY B 417 SHEET 3 AB3 4 VAL B 440 TYR B 443 -1 O GLU B 441 N ALA B 427 SHEET 4 AB3 4 TRP B 450 LEU B 452 -1 O HIS B 451 N ARG B 442 SHEET 1 AB4 2 SER B 431 HIS B 432 0 SHEET 2 AB4 2 ILE B 435 HIS B 436 -1 O ILE B 435 N HIS B 432 SHEET 1 AB5 4 GLY B 464 LEU B 468 0 SHEET 2 AB5 4 LEU B 471 PHE B 478 -1 O TYR B 473 N ALA B 466 SHEET 3 AB5 4 ARG B 483 TYR B 490 -1 O TYR B 490 N LEU B 472 SHEET 4 AB5 4 TRP B 497 ILE B 500 -1 O ILE B 500 N ALA B 487 SHEET 1 AB6 4 GLY B 511 LEU B 515 0 SHEET 2 AB6 4 CYS B 518 ALA B 522 -1 O TYR B 520 N CYS B 513 SHEET 3 AB6 4 VAL B 534 ASP B 538 -1 O TYR B 537 N ILE B 519 SHEET 4 AB6 4 THR B 543 PHE B 546 -1 O THR B 545 N ARG B 536 SHEET 1 AB7 4 GLY B 558 VAL B 561 0 SHEET 2 AB7 4 ILE B 566 LEU B 569 -1 O TYR B 567 N THR B 560 SHEET 3 AB7 4 SER B 580 ASP B 585 -1 O TYR B 584 N ILE B 566 SHEET 4 AB7 4 THR B 590 ARG B 596 -1 O THR B 590 N ASP B 585 LINK C B3A P 76 N ASP P 77 1555 1555 1.40 LINK N B3A P 76 C GLU P 82 1555 1555 1.26 LINK C THR P 80 N BAL P 81 1555 1555 1.23 CRYST1 162.349 68.849 77.215 90.00 117.63 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006160 0.000000 0.003225 0.00000 SCALE2 0.000000 0.014525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014618 0.00000