HEADER VIRAL PROTEIN 17-SEP-22 8EJL TITLE STRUCTURE OF HIV-1 CAPSID DECLINATION IN COMPLEX WITH CPSF6-FG PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 CAPSID PROTEIN; COMPND 3 CHAIN: L, M, N, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6; COMPND 7 CHAIN: Y, Z; COMPND 8 FRAGMENT: UNP RESIDUES 313-327; COMPND 9 SYNONYM: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 68 KDA COMPND 10 SUBUNIT,CPSF 68 KDA SUBUNIT,PRE-MRNA CLEAVAGE FACTOR IM 68 KDA COMPND 11 SUBUNIT,PROTEIN HPBRII-4/7; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: NL4-3; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS HIV-1, CAPSID, DECLINATION, PENTAMER, HEXAMER, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR O.PORNILLOS,B.K.GANSER-PORNILLOS,R.T.SCHIRRA,N.F.B.DOS SANTOS REVDAT 3 29-MAR-23 8EJL 1 JRNL REVDAT 2 22-FEB-23 8EJL 1 JRNL REVDAT 1 15-FEB-23 8EJL 0 JRNL AUTH R.T.SCHIRRA,N.F.B.DOS SANTOS,K.K.ZADROZNY,I.KUCHARSKA, JRNL AUTH 2 B.K.GANSER-PORNILLOS,O.PORNILLOS JRNL TITL A MOLECULAR SWITCH MODULATES ASSEMBLY AND HOST FACTOR JRNL TITL 2 BINDING OF THE HIV-1 CAPSID. JRNL REF NAT.STRUCT.MOL.BIOL. V. 30 383 2023 JRNL REFN ESSN 1545-9985 JRNL PMID 36759579 JRNL DOI 10.1038/S41594-022-00913-5 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX, CRYOSPARC, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 7URN REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 166463 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8EJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000268594. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CAPSID-LIKE PARTICLES OF IN REMARK 245 VITRO ASSEMBLED HIV-1 CA REMARK 245 PROTEIN IN COMPLEX WITH CPSF6- REMARK 245 FG PEPTIDE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : MANUAL PLUNGE-FREEZING REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.00 REMARK 245 SAMPLE DETAILS : CAPSIDS (0.27 MM CA) WERE REMARK 245 INCUBATED WITH PEPTIDE (3 MM) FOR 1 HOUR IN ICE REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C5). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, M, N, Y, Z, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.951057 0.000000 223.44874 REMARK 350 BIOMT2 2 0.951057 0.309017 0.000000 -35.39081 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.587785 0.000000 326.15686 REMARK 350 BIOMT2 3 0.587785 -0.809017 0.000000 166.18522 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.587785 0.000000 166.18523 REMARK 350 BIOMT2 4 -0.587785 -0.809017 0.000000 326.15686 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.951057 0.000000 -35.39080 REMARK 350 BIOMT2 5 -0.951057 0.309017 0.000000 223.44875 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 4 REMARK 465 ASN L 5 REMARK 465 LEU L 6 REMARK 465 GLN L 7 REMARK 465 GLY L 8 REMARK 465 GLN L 9 REMARK 465 MET L 10 REMARK 465 VAL L 86 REMARK 465 HIS L 87 REMARK 465 ALA L 88 REMARK 465 GLY L 89 REMARK 465 PRO L 90 REMARK 465 ILE L 91 REMARK 465 ALA L 92 REMARK 465 PRO L 93 REMARK 465 GLY L 94 REMARK 465 GLN L 95 REMARK 465 MET L 96 REMARK 465 ARG L 97 REMARK 465 GLY L 222 REMARK 465 GLY L 223 REMARK 465 PRO L 224 REMARK 465 GLY L 225 REMARK 465 HIS L 226 REMARK 465 LYS L 227 REMARK 465 ALA L 228 REMARK 465 ARG L 229 REMARK 465 VAL L 230 REMARK 465 LEU L 231 REMARK 465 PRO M 1 REMARK 465 ILE M 2 REMARK 465 VAL M 3 REMARK 465 GLN M 4 REMARK 465 ASN M 5 REMARK 465 LEU M 6 REMARK 465 GLN M 7 REMARK 465 GLY M 8 REMARK 465 GLN M 9 REMARK 465 MET M 10 REMARK 465 VAL M 11 REMARK 465 HIS M 12 REMARK 465 GLN M 13 REMARK 465 PRO M 85 REMARK 465 VAL M 86 REMARK 465 HIS M 87 REMARK 465 ALA M 88 REMARK 465 GLY M 89 REMARK 465 PRO M 90 REMARK 465 ILE M 91 REMARK 465 ALA M 92 REMARK 465 PRO M 93 REMARK 465 GLY M 94 REMARK 465 GLN M 95 REMARK 465 MET M 96 REMARK 465 SER M 146 REMARK 465 PRO M 147 REMARK 465 THR M 148 REMARK 465 SER M 149 REMARK 465 ILE M 150 REMARK 465 LEU M 151 REMARK 465 ASP M 152 REMARK 465 ILE M 153 REMARK 465 ARG M 154 REMARK 465 GLN M 155 REMARK 465 GLY M 156 REMARK 465 PRO M 157 REMARK 465 LYS M 158 REMARK 465 GLU M 159 REMARK 465 PRO M 160 REMARK 465 PHE M 161 REMARK 465 ARG M 162 REMARK 465 ASP M 163 REMARK 465 TYR M 164 REMARK 465 VAL M 165 REMARK 465 ASP M 166 REMARK 465 ARG M 167 REMARK 465 PHE M 168 REMARK 465 TYR M 169 REMARK 465 LYS M 170 REMARK 465 THR M 171 REMARK 465 LEU M 172 REMARK 465 ARG M 173 REMARK 465 ALA M 174 REMARK 465 GLU M 175 REMARK 465 GLN M 176 REMARK 465 ALA M 177 REMARK 465 SER M 178 REMARK 465 GLN M 179 REMARK 465 GLU M 180 REMARK 465 VAL M 181 REMARK 465 LYS M 182 REMARK 465 ASN M 183 REMARK 465 TRP M 184 REMARK 465 MET M 185 REMARK 465 THR M 186 REMARK 465 GLU M 187 REMARK 465 THR M 188 REMARK 465 LEU M 189 REMARK 465 LEU M 190 REMARK 465 VAL M 191 REMARK 465 GLN M 192 REMARK 465 ASN M 193 REMARK 465 ALA M 194 REMARK 465 ASN M 195 REMARK 465 PRO M 196 REMARK 465 ASP M 197 REMARK 465 CYS M 198 REMARK 465 LYS M 199 REMARK 465 THR M 200 REMARK 465 ILE M 201 REMARK 465 LEU M 202 REMARK 465 LYS M 203 REMARK 465 ALA M 204 REMARK 465 LEU M 205 REMARK 465 GLY M 206 REMARK 465 PRO M 207 REMARK 465 GLY M 208 REMARK 465 ALA M 209 REMARK 465 THR M 210 REMARK 465 LEU M 211 REMARK 465 GLU M 212 REMARK 465 GLU M 213 REMARK 465 MET M 214 REMARK 465 MET M 215 REMARK 465 THR M 216 REMARK 465 ALA M 217 REMARK 465 CYS M 218 REMARK 465 GLN M 219 REMARK 465 GLY M 220 REMARK 465 VAL M 221 REMARK 465 GLY M 222 REMARK 465 GLY M 223 REMARK 465 PRO M 224 REMARK 465 GLY M 225 REMARK 465 HIS M 226 REMARK 465 LYS M 227 REMARK 465 ALA M 228 REMARK 465 ARG M 229 REMARK 465 VAL M 230 REMARK 465 LEU M 231 REMARK 465 PRO N 1 REMARK 465 ILE N 2 REMARK 465 VAL N 3 REMARK 465 GLN N 4 REMARK 465 ASN N 5 REMARK 465 LEU N 6 REMARK 465 GLN N 7 REMARK 465 GLY N 8 REMARK 465 GLN N 9 REMARK 465 MET N 10 REMARK 465 VAL N 11 REMARK 465 HIS N 12 REMARK 465 GLN N 13 REMARK 465 ALA N 14 REMARK 465 ILE N 15 REMARK 465 SER N 16 REMARK 465 PRO N 17 REMARK 465 ARG N 18 REMARK 465 THR N 19 REMARK 465 LEU N 20 REMARK 465 ASN N 21 REMARK 465 ALA N 22 REMARK 465 TRP N 23 REMARK 465 VAL N 24 REMARK 465 LYS N 25 REMARK 465 VAL N 26 REMARK 465 VAL N 27 REMARK 465 GLU N 28 REMARK 465 GLU N 29 REMARK 465 LYS N 30 REMARK 465 ALA N 31 REMARK 465 PHE N 32 REMARK 465 SER N 33 REMARK 465 PRO N 34 REMARK 465 GLU N 35 REMARK 465 VAL N 36 REMARK 465 ILE N 37 REMARK 465 PRO N 38 REMARK 465 MET N 39 REMARK 465 PHE N 40 REMARK 465 SER N 41 REMARK 465 ALA N 42 REMARK 465 LEU N 43 REMARK 465 SER N 44 REMARK 465 GLU N 45 REMARK 465 GLY N 46 REMARK 465 ALA N 47 REMARK 465 THR N 48 REMARK 465 PRO N 49 REMARK 465 GLN N 50 REMARK 465 ASP N 51 REMARK 465 LEU N 52 REMARK 465 ASN N 53 REMARK 465 THR N 54 REMARK 465 MET N 55 REMARK 465 LEU N 56 REMARK 465 ASN N 57 REMARK 465 THR N 58 REMARK 465 VAL N 59 REMARK 465 GLY N 60 REMARK 465 GLY N 61 REMARK 465 HIS N 62 REMARK 465 GLN N 63 REMARK 465 ALA N 64 REMARK 465 ALA N 65 REMARK 465 MET N 66 REMARK 465 GLN N 67 REMARK 465 MET N 68 REMARK 465 LEU N 69 REMARK 465 LYS N 70 REMARK 465 GLU N 71 REMARK 465 THR N 72 REMARK 465 ILE N 73 REMARK 465 ASN N 74 REMARK 465 GLU N 75 REMARK 465 GLU N 76 REMARK 465 ALA N 77 REMARK 465 ALA N 78 REMARK 465 GLU N 79 REMARK 465 TRP N 80 REMARK 465 ASP N 81 REMARK 465 ARG N 82 REMARK 465 LEU N 83 REMARK 465 HIS N 84 REMARK 465 PRO N 85 REMARK 465 VAL N 86 REMARK 465 HIS N 87 REMARK 465 ALA N 88 REMARK 465 GLY N 89 REMARK 465 PRO N 90 REMARK 465 ILE N 91 REMARK 465 ALA N 92 REMARK 465 PRO N 93 REMARK 465 GLY N 94 REMARK 465 GLN N 95 REMARK 465 MET N 96 REMARK 465 ARG N 97 REMARK 465 GLU N 98 REMARK 465 PRO N 99 REMARK 465 ARG N 100 REMARK 465 GLY N 101 REMARK 465 SER N 102 REMARK 465 ASP N 103 REMARK 465 ILE N 104 REMARK 465 ALA N 105 REMARK 465 GLY N 106 REMARK 465 THR N 107 REMARK 465 THR N 108 REMARK 465 SER N 109 REMARK 465 THR N 110 REMARK 465 LEU N 111 REMARK 465 GLN N 112 REMARK 465 GLU N 113 REMARK 465 GLN N 114 REMARK 465 ILE N 115 REMARK 465 GLY N 116 REMARK 465 TRP N 117 REMARK 465 MET N 118 REMARK 465 THR N 119 REMARK 465 HIS N 120 REMARK 465 ASN N 121 REMARK 465 PRO N 122 REMARK 465 PRO N 123 REMARK 465 ILE N 124 REMARK 465 PRO N 125 REMARK 465 VAL N 126 REMARK 465 GLY N 127 REMARK 465 GLU N 128 REMARK 465 ILE N 129 REMARK 465 TYR N 130 REMARK 465 LYS N 131 REMARK 465 ARG N 132 REMARK 465 TRP N 133 REMARK 465 ILE N 134 REMARK 465 ILE N 135 REMARK 465 LEU N 136 REMARK 465 GLY N 137 REMARK 465 LEU N 138 REMARK 465 ASN N 139 REMARK 465 LYS N 140 REMARK 465 ILE N 141 REMARK 465 VAL N 142 REMARK 465 ARG N 143 REMARK 465 MET N 144 REMARK 465 TYR N 145 REMARK 465 SER N 146 REMARK 465 VAL N 221 REMARK 465 GLY N 222 REMARK 465 GLY N 223 REMARK 465 PRO N 224 REMARK 465 GLY N 225 REMARK 465 HIS N 226 REMARK 465 LYS N 227 REMARK 465 ALA N 228 REMARK 465 ARG N 229 REMARK 465 VAL N 230 REMARK 465 LEU N 231 REMARK 465 GLY Y 311 REMARK 465 THR Y 312 REMARK 465 LEU Y 326 REMARK 465 GLY Y 327 REMARK 465 GLY Z 311 REMARK 465 THR Z 312 REMARK 465 LEU Z 326 REMARK 465 GLY Z 327 REMARK 465 GLN A 4 REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 8 REMARK 465 GLN A 9 REMARK 465 MET A 10 REMARK 465 ARG A 82 REMARK 465 LEU A 83 REMARK 465 HIS A 84 REMARK 465 PRO A 85 REMARK 465 VAL A 86 REMARK 465 HIS A 87 REMARK 465 ALA A 88 REMARK 465 GLY A 89 REMARK 465 PRO A 90 REMARK 465 ILE A 91 REMARK 465 ALA A 92 REMARK 465 PRO A 93 REMARK 465 GLY A 94 REMARK 465 GLN A 95 REMARK 465 MET A 96 REMARK 465 ARG A 97 REMARK 465 GLU A 98 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN L 13 CG CD OE1 NE2 REMARK 470 ARG L 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU L 28 CG CD OE1 OE2 REMARK 470 GLU L 29 CG CD OE1 OE2 REMARK 470 GLU L 45 CG CD OE1 OE2 REMARK 470 MET L 68 CG SD CE REMARK 470 LYS L 70 CG CD CE NZ REMARK 470 GLU L 76 CG CD OE1 OE2 REMARK 470 GLU L 98 CG CD OE1 OE2 REMARK 470 ARG L 100 CG CD NE CZ NH1 NH2 REMARK 470 LEU L 111 CG CD1 CD2 REMARK 470 GLN L 112 CG CD OE1 NE2 REMARK 470 GLU L 113 CG CD OE1 OE2 REMARK 470 THR L 119 OG1 CG2 REMARK 470 ASN L 121 CG OD1 ND2 REMARK 470 GLU L 128 CG CD OE1 OE2 REMARK 470 ARG L 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 140 CG CD CE NZ REMARK 470 SER L 146 OG REMARK 470 ASP L 152 CG OD1 OD2 REMARK 470 ARG L 154 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 158 CG CD CE NZ REMARK 470 GLU L 159 CG CD OE1 OE2 REMARK 470 VAL L 165 CG1 CG2 REMARK 470 GLU L 175 CG CD OE1 OE2 REMARK 470 GLU L 180 CG CD OE1 OE2 REMARK 470 GLU L 187 CG CD OE1 OE2 REMARK 470 GLN L 192 CG CD OE1 NE2 REMARK 470 ASP L 197 CG OD1 OD2 REMARK 470 LYS L 199 CG CD CE NZ REMARK 470 THR L 200 OG1 CG2 REMARK 470 LYS L 203 CG CD CE NZ REMARK 470 GLU L 212 CG CD OE1 OE2 REMARK 470 GLU L 213 CG CD OE1 OE2 REMARK 470 CYS L 218 SG REMARK 470 GLN L 219 CG CD OE1 NE2 REMARK 470 ARG M 18 CG CD NE CZ NH1 NH2 REMARK 470 LYS M 25 CG CD CE NZ REMARK 470 GLU M 28 CG CD OE1 OE2 REMARK 470 GLU M 29 CG CD OE1 OE2 REMARK 470 LYS M 30 CG CD CE NZ REMARK 470 ILE M 37 CG1 CG2 CD1 REMARK 470 GLU M 45 CG CD OE1 OE2 REMARK 470 THR M 48 OG1 CG2 REMARK 470 ASP M 51 CG OD1 OD2 REMARK 470 LYS M 70 CG CD CE NZ REMARK 470 GLU M 71 CG CD OE1 OE2 REMARK 470 GLU M 79 CG CD OE1 OE2 REMARK 470 ASP M 81 CG OD1 OD2 REMARK 470 ARG M 97 CG CD NE CZ NH1 NH2 REMARK 470 GLU M 98 CG CD OE1 OE2 REMARK 470 ARG M 100 CG CD NE CZ NH1 NH2 REMARK 470 LEU M 111 CG CD1 CD2 REMARK 470 GLN M 112 CG CD OE1 NE2 REMARK 470 GLU M 113 CG CD OE1 OE2 REMARK 470 ILE M 115 CG1 CG2 CD1 REMARK 470 MET M 118 CG SD CE REMARK 470 THR M 119 OG1 CG2 REMARK 470 ASN M 121 CG OD1 ND2 REMARK 470 GLU M 128 CG CD OE1 OE2 REMARK 470 TYR M 130 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS M 131 CG CD CE NZ REMARK 470 ARG M 132 CG CD NE CZ NH1 NH2 REMARK 470 ARG M 143 CG CD NE CZ NH1 NH2 REMARK 470 ASP N 152 CG OD1 OD2 REMARK 470 ARG N 154 CG CD NE CZ NH1 NH2 REMARK 470 LYS N 158 CG CD CE NZ REMARK 470 LYS N 170 CG CD CE NZ REMARK 470 GLU N 175 CG CD OE1 OE2 REMARK 470 GLN N 176 CG CD OE1 NE2 REMARK 470 GLU N 180 CG CD OE1 OE2 REMARK 470 ASP N 197 CG OD1 OD2 REMARK 470 LYS N 199 CG CD CE NZ REMARK 470 LYS N 203 CG CD CE NZ REMARK 470 GLU N 212 CG CD OE1 OE2 REMARK 470 GLU N 213 CG CD OE1 OE2 REMARK 470 PHE Y 316 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN Y 319 CG CD OE1 NE2 REMARK 470 GLN Y 323 CG CD OE1 NE2 REMARK 470 GLN Z 323 CG CD OE1 NE2 REMARK 470 GLN A 63 CG CD OE1 NE2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 ASP A 81 CG OD1 OD2 REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 163 CG OD1 OD2 REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 ASP A 197 CG OD1 OD2 REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 31 -119.00 50.88 REMARK 500 PHE L 32 44.28 -140.72 REMARK 500 THR L 108 30.00 -140.15 REMARK 500 ALA M 31 -133.58 53.25 REMARK 500 ALA N 177 -169.72 -161.14 REMARK 500 PRO A 34 -3.41 -56.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7URN RELATED DB: PDB REMARK 900 RELATED ID: EMD-28186 RELATED DB: EMDB DBREF 8EJL L 1 231 UNP P12493 GAG_HV1N5 133 363 DBREF 8EJL M 1 231 UNP P12493 GAG_HV1N5 133 363 DBREF 8EJL N 1 231 UNP P12493 GAG_HV1N5 133 363 DBREF 8EJL Y 313 327 UNP Q16630 CPSF6_HUMAN 313 327 DBREF 8EJL Z 313 327 UNP Q16630 CPSF6_HUMAN 313 327 DBREF 8EJL A 1 231 UNP P12493 GAG_HV1N5 133 363 SEQADV 8EJL GLY Y 311 UNP Q16630 EXPRESSION TAG SEQADV 8EJL THR Y 312 UNP Q16630 EXPRESSION TAG SEQADV 8EJL GLY Z 311 UNP Q16630 EXPRESSION TAG SEQADV 8EJL THR Z 312 UNP Q16630 EXPRESSION TAG SEQRES 1 L 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 L 231 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 L 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 L 231 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 L 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 L 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 L 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 L 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 L 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 L 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 L 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 L 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 L 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 L 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 L 231 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 L 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 L 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 L 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU SEQRES 1 M 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 M 231 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 M 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 M 231 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 M 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 M 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 M 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 M 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 M 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 M 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 M 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 M 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 M 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 M 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 M 231 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 M 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 M 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 M 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU SEQRES 1 N 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 N 231 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 N 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 N 231 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 N 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 N 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 N 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 N 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 N 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 N 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 N 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 N 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 N 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 N 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 N 231 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 N 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 N 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 N 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU SEQRES 1 Y 17 GLY THR PRO VAL LEU PHE PRO GLY GLN PRO PHE GLY GLN SEQRES 2 Y 17 PRO PRO LEU GLY SEQRES 1 Z 17 GLY THR PRO VAL LEU PHE PRO GLY GLN PRO PHE GLY GLN SEQRES 2 Z 17 PRO PRO LEU GLY SEQRES 1 A 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 231 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 231 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 231 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 231 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU HELIX 1 AA1 SER L 16 LYS L 30 1 15 HELIX 2 AA2 GLU L 35 SER L 44 1 10 HELIX 3 AA3 THR L 48 THR L 58 1 11 HELIX 4 AA4 HIS L 62 HIS L 84 1 23 HELIX 5 AA5 ARG L 100 ALA L 105 1 6 HELIX 6 AA6 THR L 110 HIS L 120 1 11 HELIX 7 AA7 PRO L 125 SER L 146 1 22 HELIX 8 AA8 SER L 149 ILE L 153 5 5 HELIX 9 AA9 PRO L 160 GLU L 175 1 16 HELIX 10 AB1 SER L 178 ASN L 193 1 16 HELIX 11 AB2 ASN L 195 GLY L 206 1 12 HELIX 12 AB3 THR L 210 CYS L 218 1 9 HELIX 13 AB4 SER M 16 LYS M 30 1 15 HELIX 14 AB5 GLU M 35 LEU M 43 1 9 HELIX 15 AB6 THR M 48 THR M 58 1 11 HELIX 16 AB7 HIS M 62 HIS M 84 1 23 HELIX 17 AB8 THR M 110 HIS M 120 1 11 HELIX 18 AB9 PRO M 125 TYR M 145 1 21 HELIX 19 AC1 SER N 149 ILE N 153 5 5 HELIX 20 AC2 PRO N 160 GLU N 175 1 16 HELIX 21 AC3 SER N 178 ASN N 193 1 16 HELIX 22 AC4 ASN N 195 GLY N 206 1 12 HELIX 23 AC5 THR N 210 CYS N 218 1 9 HELIX 24 AC6 SER A 16 ALA A 31 1 16 HELIX 25 AC7 GLU A 35 SER A 44 1 10 HELIX 26 AC8 THR A 48 ASN A 57 1 10 HELIX 27 AC9 THR A 58 GLY A 61 5 4 HELIX 28 AD1 HIS A 62 ASP A 81 1 20 HELIX 29 AD2 ARG A 100 ALA A 105 1 6 HELIX 30 AD3 THR A 110 THR A 119 1 10 HELIX 31 AD4 PRO A 125 SER A 146 1 22 HELIX 32 AD5 SER A 149 ILE A 153 5 5 HELIX 33 AD6 PRO A 160 GLN A 176 1 17 HELIX 34 AD7 SER A 178 THR A 188 1 11 HELIX 35 AD8 THR A 188 ASN A 193 1 6 HELIX 36 AD9 ASN A 195 GLY A 206 1 12 HELIX 37 AE1 THR A 210 ALA A 217 1 8 CISPEP 1 ASN L 121 PRO L 122 0 -1.92 CISPEP 2 ASN M 121 PRO M 122 0 -2.20 CISPEP 3 ASN A 121 PRO A 122 0 -3.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000