HEADER DNA BINDING PROTEIN/DNA 18-SEP-22 8EJO TITLE CRYSTAL STRUCTURE OF THE HOMEODOMAIN OF PLATYPUS SDUX IN COMPLEX WITH TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*GP*CP*GP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*AP*AP*CP*A)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'- COMPND 12 D(*TP*GP*TP*TP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*CP*GP*C)-3'); COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORNITHORHYNCHUS ANATINUS; SOURCE 3 ORGANISM_COMMON: PLATYPUS; SOURCE 4 ORGANISM_TAXID: 9258; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS DUX4, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.YIN,K.SHI,H.AIHARA REVDAT 3 18-SEP-24 8EJO 1 AUTHOR REVDAT 2 04-OCT-23 8EJO 1 JRNL REVDAT 1 20-SEP-23 8EJO 0 JRNL AUTH D.BOSNAKOVSKI,E.A.TOSO,E.T.ENER,M.D.GEARHART,L.YIN, JRNL AUTH 2 F.F.LUTTMANN,A.MAGLI,K.SHI,J.KIM,H.AIHARA,M.KYBA JRNL TITL ANTAGONISM AMONG DUX FAMILY MEMBERS EVOLVED FROM AN JRNL TITL 2 ANCESTRAL TOXIC SINGLE HOMEODOMAIN PROTEIN. JRNL REF ISCIENCE V. 26 07823 2023 JRNL REFN ESSN 2589-0042 JRNL PMID 37744032 JRNL DOI 10.1016/J.ISCI.2023.107823 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 7146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.9100 - 7.2400 0.96 682 33 0.1454 0.1117 REMARK 3 2 7.2300 - 5.7400 0.98 674 44 0.1873 0.1926 REMARK 3 3 5.7400 - 5.0200 0.98 679 45 0.1817 0.2845 REMARK 3 4 5.0200 - 4.5600 0.95 663 34 0.1948 0.2875 REMARK 3 5 4.5600 - 4.2300 0.98 690 34 0.2059 0.1518 REMARK 3 6 4.2300 - 3.9800 0.99 691 45 0.2315 0.2504 REMARK 3 7 3.9800 - 3.7800 0.99 691 33 0.2251 0.3089 REMARK 3 8 3.7800 - 3.6200 0.99 702 34 0.2434 0.2560 REMARK 3 9 3.6200 - 3.4800 1.00 700 29 0.2604 0.2274 REMARK 3 10 3.4800 - 3.3600 0.99 689 35 0.2634 0.2447 REMARK 3 11 3.3600 - 3.2500 0.98 695 29 0.2653 0.4074 REMARK 3 12 3.2500 - 3.1600 0.95 671 42 0.2683 0.2201 REMARK 3 13 3.1600 - 3.0800 0.94 650 34 0.2872 0.2301 REMARK 3 14 3.0800 - 3.0000 0.89 632 31 0.3663 0.5160 REMARK 3 15 3.0000 - 2.9300 0.83 591 23 0.3383 0.4381 REMARK 3 16 2.9300 - 2.8700 0.75 512 23 0.3561 0.3469 REMARK 3 17 2.8700 - 2.8100 0.66 464 23 0.4203 0.3376 REMARK 3 18 2.8100 - 2.7600 0.60 411 29 0.4750 0.5713 REMARK 3 19 2.7600 - 2.7100 0.55 388 16 0.5136 0.3681 REMARK 3 20 2.7100 - 2.6700 0.45 317 12 0.6225 0.4014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9111 22.1158 3.6608 REMARK 3 T TENSOR REMARK 3 T11: 0.4096 T22: 0.6728 REMARK 3 T33: 0.7807 T12: -0.2147 REMARK 3 T13: 0.0728 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 3.5266 L22: 3.3998 REMARK 3 L33: 5.9320 L12: -1.5903 REMARK 3 L13: 1.9160 L23: -0.3375 REMARK 3 S TENSOR REMARK 3 S11: -0.6086 S12: 0.6716 S13: 0.3157 REMARK 3 S21: 0.0084 S22: 0.4640 S23: -0.6867 REMARK 3 S31: -0.3086 S32: 1.0218 S33: 0.1640 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5038 15.4248 1.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.3404 T22: 0.5686 REMARK 3 T33: 0.8258 T12: -0.1815 REMARK 3 T13: 0.1084 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 5.6684 L22: 6.5758 REMARK 3 L33: 7.4314 L12: -0.7728 REMARK 3 L13: 4.7922 L23: 2.9687 REMARK 3 S TENSOR REMARK 3 S11: -0.3962 S12: 0.6971 S13: -1.0087 REMARK 3 S21: -0.6978 S22: 0.2561 S23: 0.1940 REMARK 3 S31: 0.3351 S32: 0.2477 S33: 0.1531 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8941 7.3499 4.4464 REMARK 3 T TENSOR REMARK 3 T11: 0.6683 T22: 0.4920 REMARK 3 T33: 1.0275 T12: -0.1073 REMARK 3 T13: 0.1746 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 8.7009 L22: 9.1720 REMARK 3 L33: 1.9657 L12: -7.7118 REMARK 3 L13: -0.8644 L23: 2.8786 REMARK 3 S TENSOR REMARK 3 S11: -0.6428 S12: 0.0736 S13: -2.9689 REMARK 3 S21: -0.1295 S22: 0.2726 S23: 1.4242 REMARK 3 S31: 0.6822 S32: -0.5616 S33: 0.4350 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.0490 20.8225 1.7759 REMARK 3 T TENSOR REMARK 3 T11: 0.3891 T22: 0.8294 REMARK 3 T33: 0.8376 T12: -0.1309 REMARK 3 T13: -0.0917 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 3.3739 L22: 3.5946 REMARK 3 L33: 4.6179 L12: 2.3723 REMARK 3 L13: -3.4775 L23: -1.5215 REMARK 3 S TENSOR REMARK 3 S11: -0.6277 S12: 0.5424 S13: 0.2222 REMARK 3 S21: -0.8591 S22: -0.1650 S23: 0.6512 REMARK 3 S31: 0.0085 S32: -1.2549 S33: 0.5724 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3073 19.6382 2.3065 REMARK 3 T TENSOR REMARK 3 T11: 0.3569 T22: 0.5065 REMARK 3 T33: 1.0669 T12: -0.1262 REMARK 3 T13: 0.1160 T23: 0.0723 REMARK 3 L TENSOR REMARK 3 L11: 4.9553 L22: 4.7821 REMARK 3 L33: 7.1741 L12: -0.7511 REMARK 3 L13: -4.3258 L23: -2.3362 REMARK 3 S TENSOR REMARK 3 S11: -0.3185 S12: 0.5080 S13: -0.0110 REMARK 3 S21: -0.4103 S22: 0.1433 S23: 0.0353 REMARK 3 S31: 0.0294 S32: -0.4973 S33: 0.0416 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8357 26.9178 -7.1811 REMARK 3 T TENSOR REMARK 3 T11: 0.8382 T22: 0.8457 REMARK 3 T33: 0.9614 T12: -0.4409 REMARK 3 T13: -0.1558 T23: 0.2328 REMARK 3 L TENSOR REMARK 3 L11: 2.4353 L22: 1.9417 REMARK 3 L33: 4.9506 L12: -1.5672 REMARK 3 L13: -2.9097 L23: 0.7570 REMARK 3 S TENSOR REMARK 3 S11: -0.7822 S12: 0.6718 S13: 0.4725 REMARK 3 S21: -1.0475 S22: 0.0619 S23: -0.3550 REMARK 3 S31: -0.5229 S32: 0.2312 S33: 0.4144 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4837 2.8327 -5.3589 REMARK 3 T TENSOR REMARK 3 T11: 1.1377 T22: 0.9672 REMARK 3 T33: 1.4183 T12: -0.4528 REMARK 3 T13: 0.1993 T23: -0.1619 REMARK 3 L TENSOR REMARK 3 L11: 7.2612 L22: 1.9078 REMARK 3 L33: 5.7542 L12: -1.6707 REMARK 3 L13: 0.9248 L23: 0.2389 REMARK 3 S TENSOR REMARK 3 S11: -0.4090 S12: -0.6018 S13: -0.7288 REMARK 3 S21: -1.1548 S22: -0.1359 S23: 0.9778 REMARK 3 S31: 2.1931 S32: 0.9269 S33: 0.1113 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7581 2.6724 -4.8749 REMARK 3 T TENSOR REMARK 3 T11: 1.0638 T22: 0.9646 REMARK 3 T33: 1.7189 T12: -0.4782 REMARK 3 T13: 0.3506 T23: -0.3297 REMARK 3 L TENSOR REMARK 3 L11: 0.3567 L22: 3.9403 REMARK 3 L33: 4.9302 L12: 1.1849 REMARK 3 L13: 1.3195 L23: 4.4114 REMARK 3 S TENSOR REMARK 3 S11: -0.5625 S12: 0.3981 S13: -2.2655 REMARK 3 S21: -0.8421 S22: -1.4614 S23: 0.7666 REMARK 3 S31: 0.8809 S32: -1.6884 S33: -0.1150 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6748 12.7578 -7.8190 REMARK 3 T TENSOR REMARK 3 T11: 0.8657 T22: 1.0383 REMARK 3 T33: 1.0732 T12: -0.4282 REMARK 3 T13: 0.2289 T23: -0.0750 REMARK 3 L TENSOR REMARK 3 L11: 6.1282 L22: 5.5312 REMARK 3 L33: 3.7451 L12: -0.6520 REMARK 3 L13: 0.3636 L23: 2.4433 REMARK 3 S TENSOR REMARK 3 S11: -0.4412 S12: 0.7672 S13: 0.2554 REMARK 3 S21: -1.6128 S22: 0.7390 S23: -0.1681 REMARK 3 S31: 0.1407 S32: 1.5717 S33: 0.6475 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5228 30.2191 -10.4090 REMARK 3 T TENSOR REMARK 3 T11: 1.1006 T22: 1.2308 REMARK 3 T33: 1.1153 T12: -0.3396 REMARK 3 T13: -0.0551 T23: 0.1321 REMARK 3 L TENSOR REMARK 3 L11: 2.6351 L22: 8.9694 REMARK 3 L33: 4.5923 L12: -0.7003 REMARK 3 L13: 0.5003 L23: 6.0243 REMARK 3 S TENSOR REMARK 3 S11: -0.5624 S12: 1.7371 S13: 0.4848 REMARK 3 S21: -2.0818 S22: -0.1984 S23: 0.3376 REMARK 3 S31: -1.0541 S32: -2.2396 S33: 0.4431 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 16 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7607 35.7691 1.9871 REMARK 3 T TENSOR REMARK 3 T11: 1.2370 T22: 1.0485 REMARK 3 T33: 1.2891 T12: -0.3430 REMARK 3 T13: -0.2132 T23: 0.0634 REMARK 3 L TENSOR REMARK 3 L11: 9.5690 L22: 4.5217 REMARK 3 L33: 3.4582 L12: 5.2816 REMARK 3 L13: -2.7142 L23: 0.0984 REMARK 3 S TENSOR REMARK 3 S11: 0.6167 S12: 0.4372 S13: -0.0828 REMARK 3 S21: 0.4352 S22: 1.5238 S23: 2.2032 REMARK 3 S31: 1.4756 S32: -1.0310 S33: -1.9202 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 21 THROUGH 74 OR REMARK 3 RESID 76)) REMARK 3 SELECTION : (CHAIN B AND (RESID 21 THROUGH 74 OR REMARK 3 RESID 76)) REMARK 3 ATOM PAIRS NUMBER : 559 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000264627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8096 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 74.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.25300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 0.05M HEPES SODIUM 7.5, 28 REMARK 280 % V/V PEG 400, 0.002M SPERMINE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.65450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.01100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.01100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.98175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.01100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.01100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.32725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.01100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.01100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.98175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.01100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.01100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.32725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.65450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 ALA A 17 REMARK 465 ARG A 18 REMARK 465 GLU A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 77 REMARK 465 GLY A 78 REMARK 465 GLN A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 LYS A 82 REMARK 465 LEU A 83 REMARK 465 GLU A 84 REMARK 465 VAL A 85 REMARK 465 GLY B 15 REMARK 465 PRO B 16 REMARK 465 ALA B 17 REMARK 465 ARG B 18 REMARK 465 GLU B 19 REMARK 465 GLY B 20 REMARK 465 LEU B 77 REMARK 465 GLY B 78 REMARK 465 GLN B 79 REMARK 465 LYS B 80 REMARK 465 LYS B 81 REMARK 465 LYS B 82 REMARK 465 LEU B 83 REMARK 465 GLU B 84 REMARK 465 VAL B 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 4 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF1 8EJO A 17 85 UNP A0A6I8NF41_ORNAN DBREF2 8EJO A A0A6I8NF41 43 111 DBREF1 8EJO B 17 85 UNP A0A6I8NF41_ORNAN DBREF2 8EJO B A0A6I8NF41 43 111 DBREF 8EJO C 1 17 PDB 8EJO 8EJO 1 17 DBREF 8EJO D 1 17 PDB 8EJO 8EJO 1 17 SEQADV 8EJO GLY A 15 UNP A0A6I8NF4 EXPRESSION TAG SEQADV 8EJO PRO A 16 UNP A0A6I8NF4 EXPRESSION TAG SEQADV 8EJO GLY B 15 UNP A0A6I8NF4 EXPRESSION TAG SEQADV 8EJO PRO B 16 UNP A0A6I8NF4 EXPRESSION TAG SEQRES 1 A 71 GLY PRO ALA ARG GLU GLY ALA ARG ARG LYS ARG THR THR SEQRES 2 A 71 PHE ASN LYS THR GLN LEU GLU ILE LEU VAL LYS SER PHE SEQRES 3 A 71 ASN LYS ASP PRO TYR PRO GLY ILE GLY VAL ARG GLU HIS SEQRES 4 A 71 LEU ALA SER LEU ILE GLN ILE PRO GLU SER ARG ILE GLN SEQRES 5 A 71 VAL TRP PHE GLN ASN ARG ARG ALA ARG GLN LEU GLY GLN SEQRES 6 A 71 LYS LYS LYS LEU GLU VAL SEQRES 1 B 71 GLY PRO ALA ARG GLU GLY ALA ARG ARG LYS ARG THR THR SEQRES 2 B 71 PHE ASN LYS THR GLN LEU GLU ILE LEU VAL LYS SER PHE SEQRES 3 B 71 ASN LYS ASP PRO TYR PRO GLY ILE GLY VAL ARG GLU HIS SEQRES 4 B 71 LEU ALA SER LEU ILE GLN ILE PRO GLU SER ARG ILE GLN SEQRES 5 B 71 VAL TRP PHE GLN ASN ARG ARG ALA ARG GLN LEU GLY GLN SEQRES 6 B 71 LYS LYS LYS LEU GLU VAL SEQRES 1 C 17 DG DC DG DT DA DA DT DC DT DA DA DT DC SEQRES 2 C 17 DA DA DC DA SEQRES 1 D 17 DT DG DT DT DG DA DT DT DA DG DA DT DT SEQRES 2 D 17 DA DC DG DC HET EDO B 101 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *4(H2 O) HELIX 1 AA1 ASN A 29 ASP A 43 1 15 HELIX 2 AA2 GLY A 47 GLN A 59 1 13 HELIX 3 AA3 PRO A 61 GLN A 76 1 16 HELIX 4 AA4 ASN B 29 ASP B 43 1 15 HELIX 5 AA5 GLY B 47 GLN B 59 1 13 HELIX 6 AA6 PRO B 61 GLN B 76 1 16 CRYST1 74.022 74.022 97.309 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013509 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013509 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010277 0.00000