HEADER DNA BINDING PROTEIN/DNA 18-SEP-22 8EJP TITLE CRYSTAL STRUCTURE OF THE HOMEODOMAIN OF PLATYPUS SDUX IN COMPLEX WITH TITLE 2 DNA CONTAINING 5-BROMOURACIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*GP*CP*GP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*AP*AP*CP*A)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'- COMPND 12 D(*TP*GP*TP*TP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*CP*GP*C)-3'); COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORNITHORHYNCHUS ANATINUS; SOURCE 3 ORGANISM_COMMON: PLATYPUS; SOURCE 4 ORGANISM_TAXID: 9258; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS DUX4, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.YIN,K.SHI,H.AIHARA REVDAT 3 18-SEP-24 8EJP 1 AUTHOR REVDAT 2 04-OCT-23 8EJP 1 JRNL REVDAT 1 20-SEP-23 8EJP 0 JRNL AUTH D.BOSNAKOVSKI,E.A.TOSO,E.T.ENER,M.D.GEARHART,L.YIN, JRNL AUTH 2 F.F.LUTTMANN,A.MAGLI,K.SHI,J.KIM,H.AIHARA,M.KYBA JRNL TITL ANTAGONISM AMONG DUX FAMILY MEMBERS EVOLVED FROM AN JRNL TITL 2 ANCESTRAL TOXIC SINGLE HOMEODOMAIN PROTEIN. JRNL REF ISCIENCE V. 26 07823 2023 JRNL REFN ESSN 2589-0042 JRNL PMID 37744032 JRNL DOI 10.1016/J.ISCI.2023.107823 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 67.6 REMARK 3 NUMBER OF REFLECTIONS : 10450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.270 REMARK 3 FREE R VALUE TEST SET COUNT : 1006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.6760 - 5.9000 1.00 1346 65 0.1577 0.1795 REMARK 3 2 5.9000 - 4.6800 1.00 1318 93 0.1952 0.2065 REMARK 3 3 4.6800 - 4.0900 1.00 1335 80 0.1921 0.2214 REMARK 3 4 4.0900 - 3.7200 1.00 1307 85 0.2292 0.2654 REMARK 3 5 3.7200 - 3.4500 1.00 1326 78 0.2549 0.2608 REMARK 3 6 3.4500 - 3.2500 0.99 1320 70 0.2665 0.3318 REMARK 3 7 3.2500 - 3.0900 0.96 1280 74 0.2949 0.3410 REMARK 3 8 3.0800 - 2.9500 0.92 1234 68 0.3392 0.2116 REMARK 3 9 2.9500 - 2.8400 0.85 1149 51 0.3656 0.4924 REMARK 3 10 2.8400 - 2.7400 0.77 1058 43 0.3685 0.4760 REMARK 3 11 2.7400 - 2.6500 0.70 929 41 0.3700 0.2756 REMARK 3 12 2.6500 - 2.5800 0.63 856 44 0.3627 0.5035 REMARK 3 13 2.5800 - 2.5100 0.57 756 46 0.3772 0.3648 REMARK 3 14 2.5100 - 2.4500 0.51 668 33 0.3815 0.4639 REMARK 3 15 2.4500 - 2.3900 0.46 605 39 0.3806 0.2651 REMARK 3 16 2.3900 - 2.3400 0.40 532 30 0.3896 0.4348 REMARK 3 17 2.3400 - 2.3000 0.35 462 24 0.4159 0.4167 REMARK 3 18 2.3000 - 2.2500 0.24 309 22 0.3553 0.3768 REMARK 3 19 2.2500 - 2.2100 0.16 210 16 0.3611 0.3221 REMARK 3 20 2.2100 - 2.1740 0.05 70 4 0.4652 0.1470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 89.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7918 28.7416 3.4275 REMARK 3 T TENSOR REMARK 3 T11: 0.6346 T22: 0.5987 REMARK 3 T33: 1.3118 T12: -0.1101 REMARK 3 T13: -0.0505 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 9.9086 L22: 2.8108 REMARK 3 L33: 8.2013 L12: -2.4862 REMARK 3 L13: 5.0996 L23: -2.4500 REMARK 3 S TENSOR REMARK 3 S11: -0.4396 S12: 0.6484 S13: 1.2108 REMARK 3 S21: 0.0034 S22: 0.0722 S23: 0.5799 REMARK 3 S31: -1.3213 S32: 0.2285 S33: 0.3545 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6437 14.9542 2.5267 REMARK 3 T TENSOR REMARK 3 T11: 0.4302 T22: 0.7028 REMARK 3 T33: 1.0922 T12: -0.0602 REMARK 3 T13: 0.0885 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 2.1173 L22: 6.1118 REMARK 3 L33: 9.8843 L12: 1.0487 REMARK 3 L13: 2.4456 L23: 3.7059 REMARK 3 S TENSOR REMARK 3 S11: -0.5413 S12: 0.7797 S13: -0.3772 REMARK 3 S21: -0.4139 S22: 0.4143 S23: -0.4891 REMARK 3 S31: 0.6029 S32: 1.1108 S33: 0.1052 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5889 14.0667 9.7906 REMARK 3 T TENSOR REMARK 3 T11: 0.3820 T22: 0.4908 REMARK 3 T33: 0.9872 T12: -0.0233 REMARK 3 T13: 0.0793 T23: 0.1360 REMARK 3 L TENSOR REMARK 3 L11: 1.2492 L22: 9.7943 REMARK 3 L33: 3.5964 L12: 0.6988 REMARK 3 L13: 2.0585 L23: 2.5246 REMARK 3 S TENSOR REMARK 3 S11: -0.1416 S12: -0.6694 S13: -1.2068 REMARK 3 S21: 0.8278 S22: -0.0073 S23: -0.3156 REMARK 3 S31: 0.0895 S32: -0.0263 S33: 0.1376 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8509 18.0250 -2.7718 REMARK 3 T TENSOR REMARK 3 T11: 0.4764 T22: 0.6631 REMARK 3 T33: 1.0527 T12: -0.1877 REMARK 3 T13: 0.0100 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 2.7814 L22: 9.5122 REMARK 3 L33: 6.1071 L12: 2.6131 REMARK 3 L13: 3.0146 L23: 1.4128 REMARK 3 S TENSOR REMARK 3 S11: -0.9102 S12: 0.9566 S13: -0.7199 REMARK 3 S21: -1.3422 S22: 0.2196 S23: 0.4327 REMARK 3 S31: -0.0963 S32: 0.4095 S33: 0.7158 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2727 7.2525 4.8821 REMARK 3 T TENSOR REMARK 3 T11: 0.6461 T22: 0.5767 REMARK 3 T33: 1.4431 T12: -0.0826 REMARK 3 T13: 0.1664 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 5.6760 L22: 6.0263 REMARK 3 L33: 7.2011 L12: -5.8354 REMARK 3 L13: -6.3977 L23: 6.5825 REMARK 3 S TENSOR REMARK 3 S11: -1.4026 S12: 0.0734 S13: -1.6567 REMARK 3 S21: 0.3986 S22: 0.4633 S23: 0.6121 REMARK 3 S31: 0.6451 S32: 0.3761 S33: 0.9174 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.5193 20.7402 2.0785 REMARK 3 T TENSOR REMARK 3 T11: 0.4294 T22: 0.7403 REMARK 3 T33: 1.0321 T12: -0.0896 REMARK 3 T13: -0.0462 T23: 0.1357 REMARK 3 L TENSOR REMARK 3 L11: 1.9759 L22: 8.4818 REMARK 3 L33: 9.8241 L12: 3.8171 REMARK 3 L13: -3.3028 L23: -4.1630 REMARK 3 S TENSOR REMARK 3 S11: -0.7157 S12: 0.9482 S13: 0.1627 REMARK 3 S21: -0.4109 S22: 0.6775 S23: 1.2146 REMARK 3 S31: -0.2977 S32: -1.6331 S33: 0.0748 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6415 22.6283 9.0990 REMARK 3 T TENSOR REMARK 3 T11: 0.3796 T22: 0.4879 REMARK 3 T33: 1.3466 T12: -0.0269 REMARK 3 T13: 0.0370 T23: -0.0803 REMARK 3 L TENSOR REMARK 3 L11: 2.7592 L22: 5.3987 REMARK 3 L33: 8.6891 L12: 0.9104 REMARK 3 L13: -0.0846 L23: -4.6786 REMARK 3 S TENSOR REMARK 3 S11: -0.1944 S12: -0.2443 S13: 0.9016 REMARK 3 S21: 0.6989 S22: 0.4855 S23: 0.3083 REMARK 3 S31: -1.2036 S32: 0.8535 S33: -0.3125 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7492 17.0882 -2.3408 REMARK 3 T TENSOR REMARK 3 T11: 0.2991 T22: 0.5222 REMARK 3 T33: 1.4464 T12: -0.6622 REMARK 3 T13: 0.3467 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 3.2018 L22: 2.3138 REMARK 3 L33: 2.1787 L12: -0.1455 REMARK 3 L13: 0.4528 L23: -1.4104 REMARK 3 S TENSOR REMARK 3 S11: -0.3144 S12: 0.5083 S13: -0.5934 REMARK 3 S21: -0.5365 S22: 0.2587 S23: -0.1172 REMARK 3 S31: 0.6166 S32: -0.3718 S33: -0.2952 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3328 26.7714 -7.1027 REMARK 3 T TENSOR REMARK 3 T11: 0.7737 T22: 0.8109 REMARK 3 T33: 1.1696 T12: -0.5143 REMARK 3 T13: -0.2319 T23: 0.2280 REMARK 3 L TENSOR REMARK 3 L11: 1.5081 L22: 4.5475 REMARK 3 L33: 2.8347 L12: -1.5596 REMARK 3 L13: -1.8849 L23: 0.7763 REMARK 3 S TENSOR REMARK 3 S11: -1.3569 S12: 0.3793 S13: 0.5577 REMARK 3 S21: -1.4963 S22: 0.2967 S23: -0.3960 REMARK 3 S31: -0.4974 S32: 0.2573 S33: 0.3940 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8726 2.5795 -4.8912 REMARK 3 T TENSOR REMARK 3 T11: 0.8844 T22: 1.0209 REMARK 3 T33: 1.7118 T12: -0.4558 REMARK 3 T13: 0.0397 T23: -0.0775 REMARK 3 L TENSOR REMARK 3 L11: 4.8128 L22: 3.2350 REMARK 3 L33: 8.9251 L12: -0.5983 REMARK 3 L13: 0.9367 L23: 3.6602 REMARK 3 S TENSOR REMARK 3 S11: -0.4996 S12: -0.3900 S13: -0.5744 REMARK 3 S21: -0.9228 S22: 0.7655 S23: 0.5232 REMARK 3 S31: 1.9261 S32: 0.4717 S33: -0.3582 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4881 3.4136 -4.0372 REMARK 3 T TENSOR REMARK 3 T11: 0.7353 T22: 0.7890 REMARK 3 T33: 1.9593 T12: -0.7242 REMARK 3 T13: 0.3101 T23: -0.3683 REMARK 3 L TENSOR REMARK 3 L11: 0.8704 L22: 1.1984 REMARK 3 L33: 0.0207 L12: -1.0217 REMARK 3 L13: 0.1342 L23: -0.1464 REMARK 3 S TENSOR REMARK 3 S11: -0.1994 S12: 0.5363 S13: -0.8612 REMARK 3 S21: -0.6380 S22: 0.3772 S23: 0.6301 REMARK 3 S31: 0.7845 S32: -0.7940 S33: -0.6671 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 7 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8086 24.9198 -7.6179 REMARK 3 T TENSOR REMARK 3 T11: 0.7354 T22: 1.0954 REMARK 3 T33: 1.3424 T12: -0.4322 REMARK 3 T13: -0.0487 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 1.9725 L22: 7.7672 REMARK 3 L33: 3.1234 L12: 1.9056 REMARK 3 L13: -0.6818 L23: -0.7858 REMARK 3 S TENSOR REMARK 3 S11: -0.9899 S12: 1.0040 S13: 0.4530 REMARK 3 S21: -0.8810 S22: 0.3314 S23: 0.5204 REMARK 3 S31: -0.5147 S32: -0.2510 S33: 0.3938 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 21 THROUGH 74 OR REMARK 3 RESID 76)) REMARK 3 SELECTION : (CHAIN B AND (RESID 21 THROUGH 74 OR REMARK 3 RESID 76)) REMARK 3 ATOM PAIRS NUMBER : 561 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1000264628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.174 REMARK 200 RESOLUTION RANGE LOW (A) : 59.676 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 1.44400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.84400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.24950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.24950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.76600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.24950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.24950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.92200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.24950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.24950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.76600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.24950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.24950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.92200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.84400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 ALA A 17 REMARK 465 ARG A 18 REMARK 465 GLU A 19 REMARK 465 GLY A 20 REMARK 465 LEU A 77 REMARK 465 GLY A 78 REMARK 465 GLN A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 LYS A 82 REMARK 465 LEU A 83 REMARK 465 GLU A 84 REMARK 465 VAL A 85 REMARK 465 GLY B 15 REMARK 465 PRO B 16 REMARK 465 ALA B 17 REMARK 465 ARG B 18 REMARK 465 GLU B 19 REMARK 465 GLY B 20 REMARK 465 LEU B 77 REMARK 465 GLY B 78 REMARK 465 GLN B 79 REMARK 465 LYS B 80 REMARK 465 LYS B 81 REMARK 465 LYS B 82 REMARK 465 LEU B 83 REMARK 465 GLU B 84 REMARK 465 VAL B 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 4 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 75 12.42 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8EJP A 17 85 UNP A0A6I8NF41_ORNAN DBREF2 8EJP A A0A6I8NF41 43 111 DBREF1 8EJP B 17 85 UNP A0A6I8NF41_ORNAN DBREF2 8EJP B A0A6I8NF41 43 111 DBREF 8EJP C 1 17 PDB 8EJP 8EJP 1 17 DBREF 8EJP D 1 17 PDB 8EJP 8EJP 1 17 SEQADV 8EJP GLY A 15 UNP A0A6I8NF4 EXPRESSION TAG SEQADV 8EJP PRO A 16 UNP A0A6I8NF4 EXPRESSION TAG SEQADV 8EJP GLY B 15 UNP A0A6I8NF4 EXPRESSION TAG SEQADV 8EJP PRO B 16 UNP A0A6I8NF4 EXPRESSION TAG SEQRES 1 A 71 GLY PRO ALA ARG GLU GLY ALA ARG ARG LYS ARG THR THR SEQRES 2 A 71 PHE ASN LYS THR GLN LEU GLU ILE LEU VAL LYS SER PHE SEQRES 3 A 71 ASN LYS ASP PRO TYR PRO GLY ILE GLY VAL ARG GLU HIS SEQRES 4 A 71 LEU ALA SER LEU ILE GLN ILE PRO GLU SER ARG ILE GLN SEQRES 5 A 71 VAL TRP PHE GLN ASN ARG ARG ALA ARG GLN LEU GLY GLN SEQRES 6 A 71 LYS LYS LYS LEU GLU VAL SEQRES 1 B 71 GLY PRO ALA ARG GLU GLY ALA ARG ARG LYS ARG THR THR SEQRES 2 B 71 PHE ASN LYS THR GLN LEU GLU ILE LEU VAL LYS SER PHE SEQRES 3 B 71 ASN LYS ASP PRO TYR PRO GLY ILE GLY VAL ARG GLU HIS SEQRES 4 B 71 LEU ALA SER LEU ILE GLN ILE PRO GLU SER ARG ILE GLN SEQRES 5 B 71 VAL TRP PHE GLN ASN ARG ARG ALA ARG GLN LEU GLY GLN SEQRES 6 B 71 LYS LYS LYS LEU GLU VAL SEQRES 1 C 17 DG DC DG DT DA DA DT DC DT DA DA DT DC SEQRES 2 C 17 DA DA DC DA SEQRES 1 D 17 DT DG BRU DT DG DA DT DT DA DG DA DT DT SEQRES 2 D 17 DA DC DG DC HET BRU D 3 20 HET EDO A 101 4 HET EDO B 101 4 HETNAM BRU 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 BRU C9 H12 BR N2 O8 P FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *3(H2 O) HELIX 1 AA1 ASN A 29 ASP A 43 1 15 HELIX 2 AA2 GLY A 47 GLN A 59 1 13 HELIX 3 AA3 PRO A 61 GLN A 76 1 16 HELIX 4 AA4 ASN B 29 ASP B 43 1 15 HELIX 5 AA5 GLY B 47 GLN B 59 1 13 HELIX 6 AA6 PRO B 61 GLN B 76 1 16 LINK O3' DG D 2 P BRU D 3 1555 1555 1.61 LINK O3' BRU D 3 P DT D 4 1555 1555 1.61 CRYST1 74.499 74.499 99.688 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010031 0.00000