data_8ER8 # _entry.id 8ER8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8ER8 pdb_00008er8 10.2210/pdb8er8/pdb WWPDB D_1000268836 ? ? EMDB EMD-28550 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-11-09 2 'Structure model' 1 1 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' citation_author 5 2 'Structure model' em_3d_fitting_list 6 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_citation_author.identifier_ORCID' 13 2 'Structure model' '_citation_author.name' 14 2 'Structure model' '_em_3d_fitting_list.accession_code' 15 2 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 16 2 'Structure model' '_em_3d_fitting_list.source_name' 17 2 'Structure model' '_em_3d_fitting_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8ER8 _pdbx_database_status.recvd_initial_deposition_date 2022-10-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category FoldIt _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-28550 'associated EM volume' EMDB . EMD-28553 'other EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email tijssenpc@gmail.com _pdbx_contact_author.name_first Peter _pdbx_contact_author.name_last Tijssen _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8947-3215 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Penzes, J.J.' 1 0000-0002-0366-9004 'McKenna, R.' 2 0000-0003-2375-3550 'Tijssen, P.' 3 0000-0001-8947-3215 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 3515 _citation.page_last 3515 _citation.title 'Bipartite genome and structural organization of the parvovirus Acheta domesticus segmented densovirus.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-023-38875-x _citation.pdbx_database_id_PubMed 37316488 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Penzes, J.J.' 1 0000-0002-0366-9004 primary 'Pham, H.T.' 2 ? primary 'Chipman, P.' 3 0000-0003-3652-4087 primary 'Smith, E.W.' 4 ? primary 'McKenna, R.' 5 ? primary 'Tijssen, P.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Acheta domesticus segmented densovirus major capsid protein' 37793.566 1 ? ? ? ? 2 polymer nat ;DNA (5'-D(P*AP*AP*TP*AP*A)-3') ; 39820.621 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;TKEGYGKHITSMHVRNIFNQGNQVIRNIVKQQRYELLDFTGTEAGTTNLPKIIPYQCIWWRGLQNAANVNQTINNMIALN TISYGVRFLKAKLCIEVYAVTRKRLIQTGATSYYTDDFEQGQNLFIGWADRKAESIPITTPADLDETKLTVANTTLFDAN NDNITKEEVPTREKWCHTWDLDVLNHNYLWEPNNLDSQWTLIPGAQAVQPTATPIGPTYQEIVIATKAIGANESALVTTI QDRRSYPRLMLSQPQIKDETDTMKFKYQIRISTELEMEHHIKPDIANPWLTRQTLPLPALSGDGTTRYVPCVPYETHVSQ RNWNHVGEYL ; ;TKEGYGKHITSMHVRNIFNQGNQVIRNIVKQQRYELLDFTGTEAGTTNLPKIIPYQCIWWRGLQNAANVNQTINNMIALN TISYGVRFLKAKLCIEVYAVTRKRLIQTGATSYYTDDFEQGQNLFIGWADRKAESIPITTPADLDETKLTVANTTLFDAN NDNITKEEVPTREKWCHTWDLDVLNHNYLWEPNNLDSQWTLIPGAQAVQPTATPIGPTYQEIVIATKAIGANESALVTTI QDRRSYPRLMLSQPQIKDETDTMKFKYQIRISTELEMEHHIKPDIANPWLTRQTLPLPALSGDGTTRYVPCVPYETHVSQ RNWNHVGEYL ; A ? 2 polydeoxyribonucleotide no no ;(DG)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N) (N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N) (N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N) (N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N) (N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N) (N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N) (N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N) (N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(N)(DG)(DA)(DA)(DT)(DA)(DA) ; ;GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATAA ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 LYS n 1 3 GLU n 1 4 GLY n 1 5 TYR n 1 6 GLY n 1 7 LYS n 1 8 HIS n 1 9 ILE n 1 10 THR n 1 11 SER n 1 12 MET n 1 13 HIS n 1 14 VAL n 1 15 ARG n 1 16 ASN n 1 17 ILE n 1 18 PHE n 1 19 ASN n 1 20 GLN n 1 21 GLY n 1 22 ASN n 1 23 GLN n 1 24 VAL n 1 25 ILE n 1 26 ARG n 1 27 ASN n 1 28 ILE n 1 29 VAL n 1 30 LYS n 1 31 GLN n 1 32 GLN n 1 33 ARG n 1 34 TYR n 1 35 GLU n 1 36 LEU n 1 37 LEU n 1 38 ASP n 1 39 PHE n 1 40 THR n 1 41 GLY n 1 42 THR n 1 43 GLU n 1 44 ALA n 1 45 GLY n 1 46 THR n 1 47 THR n 1 48 ASN n 1 49 LEU n 1 50 PRO n 1 51 LYS n 1 52 ILE n 1 53 ILE n 1 54 PRO n 1 55 TYR n 1 56 GLN n 1 57 CYS n 1 58 ILE n 1 59 TRP n 1 60 TRP n 1 61 ARG n 1 62 GLY n 1 63 LEU n 1 64 GLN n 1 65 ASN n 1 66 ALA n 1 67 ALA n 1 68 ASN n 1 69 VAL n 1 70 ASN n 1 71 GLN n 1 72 THR n 1 73 ILE n 1 74 ASN n 1 75 ASN n 1 76 MET n 1 77 ILE n 1 78 ALA n 1 79 LEU n 1 80 ASN n 1 81 THR n 1 82 ILE n 1 83 SER n 1 84 TYR n 1 85 GLY n 1 86 VAL n 1 87 ARG n 1 88 PHE n 1 89 LEU n 1 90 LYS n 1 91 ALA n 1 92 LYS n 1 93 LEU n 1 94 CYS n 1 95 ILE n 1 96 GLU n 1 97 VAL n 1 98 TYR n 1 99 ALA n 1 100 VAL n 1 101 THR n 1 102 ARG n 1 103 LYS n 1 104 ARG n 1 105 LEU n 1 106 ILE n 1 107 GLN n 1 108 THR n 1 109 GLY n 1 110 ALA n 1 111 THR n 1 112 SER n 1 113 TYR n 1 114 TYR n 1 115 THR n 1 116 ASP n 1 117 ASP n 1 118 PHE n 1 119 GLU n 1 120 GLN n 1 121 GLY n 1 122 GLN n 1 123 ASN n 1 124 LEU n 1 125 PHE n 1 126 ILE n 1 127 GLY n 1 128 TRP n 1 129 ALA n 1 130 ASP n 1 131 ARG n 1 132 LYS n 1 133 ALA n 1 134 GLU n 1 135 SER n 1 136 ILE n 1 137 PRO n 1 138 ILE n 1 139 THR n 1 140 THR n 1 141 PRO n 1 142 ALA n 1 143 ASP n 1 144 LEU n 1 145 ASP n 1 146 GLU n 1 147 THR n 1 148 LYS n 1 149 LEU n 1 150 THR n 1 151 VAL n 1 152 ALA n 1 153 ASN n 1 154 THR n 1 155 THR n 1 156 LEU n 1 157 PHE n 1 158 ASP n 1 159 ALA n 1 160 ASN n 1 161 ASN n 1 162 ASP n 1 163 ASN n 1 164 ILE n 1 165 THR n 1 166 LYS n 1 167 GLU n 1 168 GLU n 1 169 VAL n 1 170 PRO n 1 171 THR n 1 172 ARG n 1 173 GLU n 1 174 LYS n 1 175 TRP n 1 176 CYS n 1 177 HIS n 1 178 THR n 1 179 TRP n 1 180 ASP n 1 181 LEU n 1 182 ASP n 1 183 VAL n 1 184 LEU n 1 185 ASN n 1 186 HIS n 1 187 ASN n 1 188 TYR n 1 189 LEU n 1 190 TRP n 1 191 GLU n 1 192 PRO n 1 193 ASN n 1 194 ASN n 1 195 LEU n 1 196 ASP n 1 197 SER n 1 198 GLN n 1 199 TRP n 1 200 THR n 1 201 LEU n 1 202 ILE n 1 203 PRO n 1 204 GLY n 1 205 ALA n 1 206 GLN n 1 207 ALA n 1 208 VAL n 1 209 GLN n 1 210 PRO n 1 211 THR n 1 212 ALA n 1 213 THR n 1 214 PRO n 1 215 ILE n 1 216 GLY n 1 217 PRO n 1 218 THR n 1 219 TYR n 1 220 GLN n 1 221 GLU n 1 222 ILE n 1 223 VAL n 1 224 ILE n 1 225 ALA n 1 226 THR n 1 227 LYS n 1 228 ALA n 1 229 ILE n 1 230 GLY n 1 231 ALA n 1 232 ASN n 1 233 GLU n 1 234 SER n 1 235 ALA n 1 236 LEU n 1 237 VAL n 1 238 THR n 1 239 THR n 1 240 ILE n 1 241 GLN n 1 242 ASP n 1 243 ARG n 1 244 ARG n 1 245 SER n 1 246 TYR n 1 247 PRO n 1 248 ARG n 1 249 LEU n 1 250 MET n 1 251 LEU n 1 252 SER n 1 253 GLN n 1 254 PRO n 1 255 GLN n 1 256 ILE n 1 257 LYS n 1 258 ASP n 1 259 GLU n 1 260 THR n 1 261 ASP n 1 262 THR n 1 263 MET n 1 264 LYS n 1 265 PHE n 1 266 LYS n 1 267 TYR n 1 268 GLN n 1 269 ILE n 1 270 ARG n 1 271 ILE n 1 272 SER n 1 273 THR n 1 274 GLU n 1 275 LEU n 1 276 GLU n 1 277 MET n 1 278 GLU n 1 279 HIS n 1 280 HIS n 1 281 ILE n 1 282 LYS n 1 283 PRO n 1 284 ASP n 1 285 ILE n 1 286 ALA n 1 287 ASN n 1 288 PRO n 1 289 TRP n 1 290 LEU n 1 291 THR n 1 292 ARG n 1 293 GLN n 1 294 THR n 1 295 LEU n 1 296 PRO n 1 297 LEU n 1 298 PRO n 1 299 ALA n 1 300 LEU n 1 301 SER n 1 302 GLY n 1 303 ASP n 1 304 GLY n 1 305 THR n 1 306 THR n 1 307 ARG n 1 308 TYR n 1 309 VAL n 1 310 PRO n 1 311 CYS n 1 312 VAL n 1 313 PRO n 1 314 TYR n 1 315 GLU n 1 316 THR n 1 317 HIS n 1 318 VAL n 1 319 SER n 1 320 GLN n 1 321 ARG n 1 322 ASN n 1 323 TRP n 1 324 ASN n 1 325 HIS n 1 326 VAL n 1 327 GLY n 1 328 GLU n 1 329 TYR n 1 330 LEU n 2 1 DG n 2 2 N n 2 3 N n 2 4 N n 2 5 N n 2 6 N n 2 7 N n 2 8 N n 2 9 N n 2 10 N n 2 11 N n 2 12 N n 2 13 N n 2 14 N n 2 15 N n 2 16 N n 2 17 N n 2 18 N n 2 19 N n 2 20 N n 2 21 N n 2 22 N n 2 23 N n 2 24 N n 2 25 N n 2 26 N n 2 27 N n 2 28 N n 2 29 N n 2 30 N n 2 31 N n 2 32 N n 2 33 N n 2 34 N n 2 35 N n 2 36 N n 2 37 N n 2 38 N n 2 39 N n 2 40 N n 2 41 N n 2 42 N n 2 43 N n 2 44 N n 2 45 N n 2 46 N n 2 47 N n 2 48 N n 2 49 N n 2 50 N n 2 51 N n 2 52 N n 2 53 N n 2 54 N n 2 55 N n 2 56 N n 2 57 N n 2 58 N n 2 59 N n 2 60 N n 2 61 N n 2 62 N n 2 63 N n 2 64 N n 2 65 N n 2 66 N n 2 67 N n 2 68 N n 2 69 N n 2 70 N n 2 71 N n 2 72 N n 2 73 N n 2 74 N n 2 75 N n 2 76 N n 2 77 N n 2 78 N n 2 79 N n 2 80 N n 2 81 N n 2 82 N n 2 83 N n 2 84 N n 2 85 N n 2 86 N n 2 87 N n 2 88 N n 2 89 N n 2 90 N n 2 91 N n 2 92 N n 2 93 N n 2 94 N n 2 95 N n 2 96 N n 2 97 N n 2 98 N n 2 99 N n 2 100 N n 2 101 N n 2 102 N n 2 103 N n 2 104 N n 2 105 N n 2 106 N n 2 107 N n 2 108 N n 2 109 N n 2 110 N n 2 111 N n 2 112 N n 2 113 N n 2 114 N n 2 115 N n 2 116 N n 2 117 N n 2 118 N n 2 119 N n 2 120 N n 2 121 N n 2 122 N n 2 123 N n 2 124 N n 2 125 N n 2 126 N n 2 127 N n 2 128 N n 2 129 N n 2 130 N n 2 131 N n 2 132 N n 2 133 N n 2 134 N n 2 135 N n 2 136 N n 2 137 N n 2 138 N n 2 139 N n 2 140 N n 2 141 N n 2 142 N n 2 143 N n 2 144 N n 2 145 N n 2 146 N n 2 147 N n 2 148 N n 2 149 N n 2 150 N n 2 151 N n 2 152 N n 2 153 N n 2 154 N n 2 155 N n 2 156 N n 2 157 N n 2 158 N n 2 159 N n 2 160 N n 2 161 N n 2 162 N n 2 163 N n 2 164 N n 2 165 N n 2 166 N n 2 167 N n 2 168 N n 2 169 N n 2 170 N n 2 171 N n 2 172 N n 2 173 N n 2 174 N n 2 175 N n 2 176 N n 2 177 N n 2 178 N n 2 179 N n 2 180 N n 2 181 N n 2 182 N n 2 183 N n 2 184 N n 2 185 N n 2 186 N n 2 187 N n 2 188 N n 2 189 N n 2 190 N n 2 191 N n 2 192 N n 2 193 N n 2 194 DG n 2 195 DA n 2 196 DA n 2 197 DT n 2 198 DA n 2 199 DA n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 330 ? 'unclassified Densovirinae' 185880 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 199 ? 'unclassified Densovirinae' 185880 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 N 'RNA linking' . ;ANY 5'-MONOPHOSPHATE NUCLEOTIDE ; "1-DEOXY-RIBOFURANOSE-5'-PHOSPHATE" 'C5 H11 O7 P' 214.110 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 47 47 THR THR A . n A 1 2 LYS 2 48 48 LYS LYS A . n A 1 3 GLU 3 49 49 GLU GLU A . n A 1 4 GLY 4 50 50 GLY GLY A . n A 1 5 TYR 5 51 51 TYR TYR A . n A 1 6 GLY 6 52 52 GLY GLY A . n A 1 7 LYS 7 53 53 LYS LYS A . n A 1 8 HIS 8 54 54 HIS HIS A . n A 1 9 ILE 9 55 55 ILE ILE A . n A 1 10 THR 10 56 56 THR THR A . n A 1 11 SER 11 57 57 SER SER A . n A 1 12 MET 12 58 58 MET MET A . n A 1 13 HIS 13 59 59 HIS HIS A . n A 1 14 VAL 14 60 60 VAL VAL A . n A 1 15 ARG 15 61 61 ARG ARG A . n A 1 16 ASN 16 62 62 ASN ASN A . n A 1 17 ILE 17 63 63 ILE ILE A . n A 1 18 PHE 18 64 64 PHE PHE A . n A 1 19 ASN 19 65 65 ASN ASN A . n A 1 20 GLN 20 66 66 GLN GLN A . n A 1 21 GLY 21 67 67 GLY GLY A . n A 1 22 ASN 22 68 68 ASN ASN A . n A 1 23 GLN 23 69 69 GLN GLN A . n A 1 24 VAL 24 70 70 VAL VAL A . n A 1 25 ILE 25 71 71 ILE ILE A . n A 1 26 ARG 26 72 72 ARG ARG A . n A 1 27 ASN 27 73 73 ASN ASN A . n A 1 28 ILE 28 74 74 ILE ILE A . n A 1 29 VAL 29 75 75 VAL VAL A . n A 1 30 LYS 30 76 76 LYS LYS A . n A 1 31 GLN 31 77 77 GLN GLN A . n A 1 32 GLN 32 78 78 GLN GLN A . n A 1 33 ARG 33 79 79 ARG ARG A . n A 1 34 TYR 34 80 80 TYR TYR A . n A 1 35 GLU 35 81 81 GLU GLU A . n A 1 36 LEU 36 82 82 LEU LEU A . n A 1 37 LEU 37 83 83 LEU LEU A . n A 1 38 ASP 38 84 84 ASP ASP A . n A 1 39 PHE 39 85 85 PHE PHE A . n A 1 40 THR 40 86 86 THR THR A . n A 1 41 GLY 41 87 87 GLY GLY A . n A 1 42 THR 42 88 88 THR THR A . n A 1 43 GLU 43 89 89 GLU GLU A . n A 1 44 ALA 44 90 90 ALA ALA A . n A 1 45 GLY 45 91 91 GLY GLY A . n A 1 46 THR 46 92 92 THR THR A . n A 1 47 THR 47 93 93 THR THR A . n A 1 48 ASN 48 94 94 ASN ASN A . n A 1 49 LEU 49 95 95 LEU LEU A . n A 1 50 PRO 50 96 96 PRO PRO A . n A 1 51 LYS 51 97 97 LYS LYS A . n A 1 52 ILE 52 98 98 ILE ILE A . n A 1 53 ILE 53 99 99 ILE ILE A . n A 1 54 PRO 54 100 100 PRO PRO A . n A 1 55 TYR 55 101 101 TYR TYR A . n A 1 56 GLN 56 102 102 GLN GLN A . n A 1 57 CYS 57 103 103 CYS CYS A . n A 1 58 ILE 58 104 104 ILE ILE A . n A 1 59 TRP 59 105 105 TRP TRP A . n A 1 60 TRP 60 106 106 TRP TRP A . n A 1 61 ARG 61 107 107 ARG ARG A . n A 1 62 GLY 62 108 108 GLY GLY A . n A 1 63 LEU 63 109 109 LEU LEU A . n A 1 64 GLN 64 110 110 GLN GLN A . n A 1 65 ASN 65 111 111 ASN ASN A . n A 1 66 ALA 66 112 112 ALA ALA A . n A 1 67 ALA 67 113 113 ALA ALA A . n A 1 68 ASN 68 114 114 ASN ASN A . n A 1 69 VAL 69 115 115 VAL VAL A . n A 1 70 ASN 70 116 116 ASN ASN A . n A 1 71 GLN 71 117 117 GLN GLN A . n A 1 72 THR 72 118 118 THR THR A . n A 1 73 ILE 73 119 119 ILE ILE A . n A 1 74 ASN 74 120 120 ASN ASN A . n A 1 75 ASN 75 121 121 ASN ASN A . n A 1 76 MET 76 122 122 MET MET A . n A 1 77 ILE 77 123 123 ILE ILE A . n A 1 78 ALA 78 124 124 ALA ALA A . n A 1 79 LEU 79 125 125 LEU LEU A . n A 1 80 ASN 80 126 126 ASN ASN A . n A 1 81 THR 81 127 127 THR THR A . n A 1 82 ILE 82 128 128 ILE ILE A . n A 1 83 SER 83 129 129 SER SER A . n A 1 84 TYR 84 130 130 TYR TYR A . n A 1 85 GLY 85 131 131 GLY GLY A . n A 1 86 VAL 86 132 132 VAL VAL A . n A 1 87 ARG 87 133 133 ARG ARG A . n A 1 88 PHE 88 134 134 PHE PHE A . n A 1 89 LEU 89 135 135 LEU LEU A . n A 1 90 LYS 90 136 136 LYS LYS A . n A 1 91 ALA 91 137 137 ALA ALA A . n A 1 92 LYS 92 138 138 LYS LYS A . n A 1 93 LEU 93 139 139 LEU LEU A . n A 1 94 CYS 94 140 140 CYS CYS A . n A 1 95 ILE 95 141 141 ILE ILE A . n A 1 96 GLU 96 142 142 GLU GLU A . n A 1 97 VAL 97 143 143 VAL VAL A . n A 1 98 TYR 98 144 144 TYR TYR A . n A 1 99 ALA 99 145 145 ALA ALA A . n A 1 100 VAL 100 146 146 VAL VAL A . n A 1 101 THR 101 147 147 THR THR A . n A 1 102 ARG 102 148 148 ARG ARG A . n A 1 103 LYS 103 149 149 LYS LYS A . n A 1 104 ARG 104 150 150 ARG ARG A . n A 1 105 LEU 105 151 151 LEU LEU A . n A 1 106 ILE 106 152 152 ILE ILE A . n A 1 107 GLN 107 153 153 GLN GLN A . n A 1 108 THR 108 154 154 THR THR A . n A 1 109 GLY 109 155 155 GLY GLY A . n A 1 110 ALA 110 156 156 ALA ALA A . n A 1 111 THR 111 157 157 THR THR A . n A 1 112 SER 112 158 158 SER SER A . n A 1 113 TYR 113 159 159 TYR TYR A . n A 1 114 TYR 114 160 160 TYR TYR A . n A 1 115 THR 115 161 161 THR THR A . n A 1 116 ASP 116 162 162 ASP ASP A . n A 1 117 ASP 117 163 163 ASP ASP A . n A 1 118 PHE 118 164 164 PHE PHE A . n A 1 119 GLU 119 165 165 GLU GLU A . n A 1 120 GLN 120 166 166 GLN GLN A . n A 1 121 GLY 121 167 167 GLY GLY A . n A 1 122 GLN 122 168 168 GLN GLN A . n A 1 123 ASN 123 169 169 ASN ASN A . n A 1 124 LEU 124 170 170 LEU LEU A . n A 1 125 PHE 125 171 171 PHE PHE A . n A 1 126 ILE 126 172 172 ILE ILE A . n A 1 127 GLY 127 173 173 GLY GLY A . n A 1 128 TRP 128 174 174 TRP TRP A . n A 1 129 ALA 129 175 175 ALA ALA A . n A 1 130 ASP 130 176 176 ASP ASP A . n A 1 131 ARG 131 177 177 ARG ARG A . n A 1 132 LYS 132 178 178 LYS LYS A . n A 1 133 ALA 133 179 179 ALA ALA A . n A 1 134 GLU 134 180 180 GLU GLU A . n A 1 135 SER 135 181 181 SER SER A . n A 1 136 ILE 136 182 182 ILE ILE A . n A 1 137 PRO 137 183 183 PRO PRO A . n A 1 138 ILE 138 184 184 ILE ILE A . n A 1 139 THR 139 185 185 THR THR A . n A 1 140 THR 140 186 186 THR THR A . n A 1 141 PRO 141 187 187 PRO PRO A . n A 1 142 ALA 142 188 188 ALA ALA A . n A 1 143 ASP 143 189 189 ASP ASP A . n A 1 144 LEU 144 190 190 LEU LEU A . n A 1 145 ASP 145 191 191 ASP ASP A . n A 1 146 GLU 146 192 192 GLU GLU A . n A 1 147 THR 147 193 193 THR THR A . n A 1 148 LYS 148 194 194 LYS LYS A . n A 1 149 LEU 149 195 195 LEU LEU A . n A 1 150 THR 150 196 196 THR THR A . n A 1 151 VAL 151 197 197 VAL VAL A . n A 1 152 ALA 152 198 198 ALA ALA A . n A 1 153 ASN 153 199 199 ASN ASN A . n A 1 154 THR 154 200 200 THR THR A . n A 1 155 THR 155 201 201 THR THR A . n A 1 156 LEU 156 202 202 LEU LEU A . n A 1 157 PHE 157 203 203 PHE PHE A . n A 1 158 ASP 158 204 204 ASP ASP A . n A 1 159 ALA 159 205 205 ALA ALA A . n A 1 160 ASN 160 206 206 ASN ASN A . n A 1 161 ASN 161 207 207 ASN ASN A . n A 1 162 ASP 162 208 208 ASP ASP A . n A 1 163 ASN 163 209 209 ASN ASN A . n A 1 164 ILE 164 210 210 ILE ILE A . n A 1 165 THR 165 211 211 THR THR A . n A 1 166 LYS 166 212 212 LYS LYS A . n A 1 167 GLU 167 213 213 GLU GLU A . n A 1 168 GLU 168 214 214 GLU GLU A . n A 1 169 VAL 169 215 215 VAL VAL A . n A 1 170 PRO 170 216 216 PRO PRO A . n A 1 171 THR 171 217 217 THR THR A . n A 1 172 ARG 172 218 218 ARG ARG A . n A 1 173 GLU 173 219 219 GLU GLU A . n A 1 174 LYS 174 220 220 LYS LYS A . n A 1 175 TRP 175 221 221 TRP TRP A . n A 1 176 CYS 176 222 222 CYS CYS A . n A 1 177 HIS 177 223 223 HIS HIS A . n A 1 178 THR 178 224 224 THR THR A . n A 1 179 TRP 179 225 225 TRP TRP A . n A 1 180 ASP 180 226 226 ASP ASP A . n A 1 181 LEU 181 227 227 LEU LEU A . n A 1 182 ASP 182 228 228 ASP ASP A . n A 1 183 VAL 183 229 229 VAL VAL A . n A 1 184 LEU 184 230 230 LEU LEU A . n A 1 185 ASN 185 231 231 ASN ASN A . n A 1 186 HIS 186 232 232 HIS HIS A . n A 1 187 ASN 187 233 233 ASN ASN A . n A 1 188 TYR 188 234 234 TYR TYR A . n A 1 189 LEU 189 235 235 LEU LEU A . n A 1 190 TRP 190 236 236 TRP TRP A . n A 1 191 GLU 191 237 237 GLU GLU A . n A 1 192 PRO 192 238 238 PRO PRO A . n A 1 193 ASN 193 239 239 ASN ASN A . n A 1 194 ASN 194 240 240 ASN ASN A . n A 1 195 LEU 195 241 241 LEU LEU A . n A 1 196 ASP 196 242 242 ASP ASP A . n A 1 197 SER 197 243 243 SER SER A . n A 1 198 GLN 198 244 244 GLN GLN A . n A 1 199 TRP 199 245 245 TRP TRP A . n A 1 200 THR 200 246 246 THR THR A . n A 1 201 LEU 201 247 247 LEU LEU A . n A 1 202 ILE 202 248 248 ILE ILE A . n A 1 203 PRO 203 249 249 PRO PRO A . n A 1 204 GLY 204 250 250 GLY GLY A . n A 1 205 ALA 205 251 251 ALA ALA A . n A 1 206 GLN 206 252 252 GLN GLN A . n A 1 207 ALA 207 253 253 ALA ALA A . n A 1 208 VAL 208 254 254 VAL VAL A . n A 1 209 GLN 209 255 255 GLN GLN A . n A 1 210 PRO 210 256 256 PRO PRO A . n A 1 211 THR 211 257 257 THR THR A . n A 1 212 ALA 212 258 258 ALA ALA A . n A 1 213 THR 213 259 259 THR THR A . n A 1 214 PRO 214 260 260 PRO PRO A . n A 1 215 ILE 215 261 261 ILE ILE A . n A 1 216 GLY 216 262 262 GLY GLY A . n A 1 217 PRO 217 263 263 PRO PRO A . n A 1 218 THR 218 264 264 THR THR A . n A 1 219 TYR 219 265 265 TYR TYR A . n A 1 220 GLN 220 266 266 GLN GLN A . n A 1 221 GLU 221 267 267 GLU GLU A . n A 1 222 ILE 222 268 268 ILE ILE A . n A 1 223 VAL 223 269 269 VAL VAL A . n A 1 224 ILE 224 270 270 ILE ILE A . n A 1 225 ALA 225 271 271 ALA ALA A . n A 1 226 THR 226 272 272 THR THR A . n A 1 227 LYS 227 273 273 LYS LYS A . n A 1 228 ALA 228 274 274 ALA ALA A . n A 1 229 ILE 229 275 275 ILE ILE A . n A 1 230 GLY 230 276 276 GLY GLY A . n A 1 231 ALA 231 277 277 ALA ALA A . n A 1 232 ASN 232 278 278 ASN ASN A . n A 1 233 GLU 233 279 279 GLU GLU A . n A 1 234 SER 234 280 280 SER SER A . n A 1 235 ALA 235 281 281 ALA ALA A . n A 1 236 LEU 236 282 282 LEU LEU A . n A 1 237 VAL 237 283 283 VAL VAL A . n A 1 238 THR 238 284 284 THR THR A . n A 1 239 THR 239 285 285 THR THR A . n A 1 240 ILE 240 286 286 ILE ILE A . n A 1 241 GLN 241 287 287 GLN GLN A . n A 1 242 ASP 242 288 288 ASP ASP A . n A 1 243 ARG 243 289 289 ARG ARG A . n A 1 244 ARG 244 290 290 ARG ARG A . n A 1 245 SER 245 291 291 SER SER A . n A 1 246 TYR 246 292 292 TYR TYR A . n A 1 247 PRO 247 293 293 PRO PRO A . n A 1 248 ARG 248 294 294 ARG ARG A . n A 1 249 LEU 249 295 295 LEU LEU A . n A 1 250 MET 250 296 296 MET MET A . n A 1 251 LEU 251 297 297 LEU LEU A . n A 1 252 SER 252 298 298 SER SER A . n A 1 253 GLN 253 299 299 GLN GLN A . n A 1 254 PRO 254 300 300 PRO PRO A . n A 1 255 GLN 255 301 301 GLN GLN A . n A 1 256 ILE 256 302 302 ILE ILE A . n A 1 257 LYS 257 303 303 LYS LYS A . n A 1 258 ASP 258 304 304 ASP ASP A . n A 1 259 GLU 259 305 305 GLU GLU A . n A 1 260 THR 260 306 306 THR THR A . n A 1 261 ASP 261 307 307 ASP ASP A . n A 1 262 THR 262 308 308 THR THR A . n A 1 263 MET 263 309 309 MET MET A . n A 1 264 LYS 264 310 310 LYS LYS A . n A 1 265 PHE 265 311 311 PHE PHE A . n A 1 266 LYS 266 312 312 LYS LYS A . n A 1 267 TYR 267 313 313 TYR TYR A . n A 1 268 GLN 268 314 314 GLN GLN A . n A 1 269 ILE 269 315 315 ILE ILE A . n A 1 270 ARG 270 316 316 ARG ARG A . n A 1 271 ILE 271 317 317 ILE ILE A . n A 1 272 SER 272 318 318 SER SER A . n A 1 273 THR 273 319 319 THR THR A . n A 1 274 GLU 274 320 320 GLU GLU A . n A 1 275 LEU 275 321 321 LEU LEU A . n A 1 276 GLU 276 322 322 GLU GLU A . n A 1 277 MET 277 323 323 MET MET A . n A 1 278 GLU 278 324 324 GLU ALA A . n A 1 279 HIS 279 325 325 HIS HIS A . n A 1 280 HIS 280 326 326 HIS HIS A . n A 1 281 ILE 281 327 327 ILE ILE A . n A 1 282 LYS 282 328 328 LYS LYS A . n A 1 283 PRO 283 329 329 PRO PRO A . n A 1 284 ASP 284 330 330 ASP ASP A . n A 1 285 ILE 285 331 331 ILE ILE A . n A 1 286 ALA 286 332 332 ALA ALA A . n A 1 287 ASN 287 333 333 ASN ASN A . n A 1 288 PRO 288 334 334 PRO PRO A . n A 1 289 TRP 289 335 335 TRP TRP A . n A 1 290 LEU 290 336 336 LEU LEU A . n A 1 291 THR 291 337 337 THR THR A . n A 1 292 ARG 292 338 338 ARG ARG A . n A 1 293 GLN 293 339 339 GLN GLN A . n A 1 294 THR 294 340 340 THR THR A . n A 1 295 LEU 295 341 341 LEU LEU A . n A 1 296 PRO 296 342 342 PRO PRO A . n A 1 297 LEU 297 343 343 LEU LEU A . n A 1 298 PRO 298 344 344 PRO PRO A . n A 1 299 ALA 299 345 345 ALA ALA A . n A 1 300 LEU 300 346 346 LEU LEU A . n A 1 301 SER 301 347 347 SER SER A . n A 1 302 GLY 302 348 348 GLY GLY A . n A 1 303 ASP 303 349 349 ASP ASP A . n A 1 304 GLY 304 350 350 GLY GLY A . n A 1 305 THR 305 351 351 THR THR A . n A 1 306 THR 306 352 352 THR THR A . n A 1 307 ARG 307 353 353 ARG ARG A . n A 1 308 TYR 308 354 354 TYR TYR A . n A 1 309 VAL 309 355 355 VAL VAL A . n A 1 310 PRO 310 356 356 PRO PRO A . n A 1 311 CYS 311 357 357 CYS CYS A . n A 1 312 VAL 312 358 358 VAL VAL A . n A 1 313 PRO 313 359 359 PRO PRO A . n A 1 314 TYR 314 360 360 TYR TYR A . n A 1 315 GLU 315 361 361 GLU GLU A . n A 1 316 THR 316 362 362 THR THR A . n A 1 317 HIS 317 363 363 HIS HIS A . n A 1 318 VAL 318 364 364 VAL VAL A . n A 1 319 SER 319 365 365 SER SER A . n A 1 320 GLN 320 366 366 GLN GLN A . n A 1 321 ARG 321 367 367 ARG ARG A . n A 1 322 ASN 322 368 368 ASN ASN A . n A 1 323 TRP 323 369 369 TRP TRP A . n A 1 324 ASN 324 370 370 ASN ASN A . n A 1 325 HIS 325 371 371 HIS HIS A . n A 1 326 VAL 326 372 372 VAL VAL A . n A 1 327 GLY 327 373 373 GLY GLY A . n A 1 328 GLU 328 374 374 GLU GLU A . n A 1 329 TYR 329 375 375 TYR TYR A . n A 1 330 LEU 330 376 376 LEU LEU A . n B 2 1 DG 1 606 606 DG DG B . n B 2 2 N 2 608 ? ? ? B . n B 2 3 N 3 609 ? ? ? B . n B 2 4 N 4 610 ? ? ? B . n B 2 5 N 5 611 ? ? ? B . n B 2 6 N 6 612 ? ? ? B . n B 2 7 N 7 613 ? ? ? B . n B 2 8 N 8 614 ? ? ? B . n B 2 9 N 9 615 ? ? ? B . n B 2 10 N 10 616 ? ? ? B . n B 2 11 N 11 617 ? ? ? B . n B 2 12 N 12 618 ? ? ? B . n B 2 13 N 13 619 ? ? ? B . n B 2 14 N 14 620 ? ? ? B . n B 2 15 N 15 621 ? ? ? B . n B 2 16 N 16 622 ? ? ? B . n B 2 17 N 17 623 ? ? ? B . n B 2 18 N 18 624 ? ? ? B . n B 2 19 N 19 625 ? ? ? B . n B 2 20 N 20 626 ? ? ? B . n B 2 21 N 21 627 ? ? ? B . n B 2 22 N 22 628 ? ? ? B . n B 2 23 N 23 629 ? ? ? B . n B 2 24 N 24 630 ? ? ? B . n B 2 25 N 25 631 ? ? ? B . n B 2 26 N 26 632 ? ? ? B . n B 2 27 N 27 633 ? ? ? B . n B 2 28 N 28 634 ? ? ? B . n B 2 29 N 29 635 ? ? ? B . n B 2 30 N 30 636 ? ? ? B . n B 2 31 N 31 637 ? ? ? B . n B 2 32 N 32 638 ? ? ? B . n B 2 33 N 33 639 ? ? ? B . n B 2 34 N 34 640 ? ? ? B . n B 2 35 N 35 641 ? ? ? B . n B 2 36 N 36 642 ? ? ? B . n B 2 37 N 37 643 ? ? ? B . n B 2 38 N 38 644 ? ? ? B . n B 2 39 N 39 645 ? ? ? B . n B 2 40 N 40 646 ? ? ? B . n B 2 41 N 41 647 ? ? ? B . n B 2 42 N 42 648 ? ? ? B . n B 2 43 N 43 649 ? ? ? B . n B 2 44 N 44 650 ? ? ? B . n B 2 45 N 45 651 ? ? ? B . n B 2 46 N 46 652 ? ? ? B . n B 2 47 N 47 653 ? ? ? B . n B 2 48 N 48 654 ? ? ? B . n B 2 49 N 49 655 ? ? ? B . n B 2 50 N 50 656 ? ? ? B . n B 2 51 N 51 657 ? ? ? B . n B 2 52 N 52 658 ? ? ? B . n B 2 53 N 53 659 ? ? ? B . n B 2 54 N 54 660 ? ? ? B . n B 2 55 N 55 661 ? ? ? B . n B 2 56 N 56 662 ? ? ? B . n B 2 57 N 57 663 ? ? ? B . n B 2 58 N 58 664 ? ? ? B . n B 2 59 N 59 665 ? ? ? B . n B 2 60 N 60 666 ? ? ? B . n B 2 61 N 61 667 ? ? ? B . n B 2 62 N 62 668 ? ? ? B . n B 2 63 N 63 669 ? ? ? B . n B 2 64 N 64 670 ? ? ? B . n B 2 65 N 65 671 ? ? ? B . n B 2 66 N 66 672 ? ? ? B . n B 2 67 N 67 673 ? ? ? B . n B 2 68 N 68 674 ? ? ? B . n B 2 69 N 69 675 ? ? ? B . n B 2 70 N 70 676 ? ? ? B . n B 2 71 N 71 677 ? ? ? B . n B 2 72 N 72 678 ? ? ? B . n B 2 73 N 73 679 ? ? ? B . n B 2 74 N 74 680 ? ? ? B . n B 2 75 N 75 681 ? ? ? B . n B 2 76 N 76 682 ? ? ? B . n B 2 77 N 77 683 ? ? ? B . n B 2 78 N 78 684 ? ? ? B . n B 2 79 N 79 685 ? ? ? B . n B 2 80 N 80 686 ? ? ? B . n B 2 81 N 81 687 ? ? ? B . n B 2 82 N 82 688 ? ? ? B . n B 2 83 N 83 689 ? ? ? B . n B 2 84 N 84 690 ? ? ? B . n B 2 85 N 85 691 ? ? ? B . n B 2 86 N 86 692 ? ? ? B . n B 2 87 N 87 693 ? ? ? B . n B 2 88 N 88 694 ? ? ? B . n B 2 89 N 89 695 ? ? ? B . n B 2 90 N 90 696 ? ? ? B . n B 2 91 N 91 697 ? ? ? B . n B 2 92 N 92 698 ? ? ? B . n B 2 93 N 93 699 ? ? ? B . n B 2 94 N 94 700 ? ? ? B . n B 2 95 N 95 701 ? ? ? B . n B 2 96 N 96 702 ? ? ? B . n B 2 97 N 97 703 ? ? ? B . n B 2 98 N 98 704 ? ? ? B . n B 2 99 N 99 705 ? ? ? B . n B 2 100 N 100 706 ? ? ? B . n B 2 101 N 101 707 ? ? ? B . n B 2 102 N 102 708 ? ? ? B . n B 2 103 N 103 709 ? ? ? B . n B 2 104 N 104 710 ? ? ? B . n B 2 105 N 105 711 ? ? ? B . n B 2 106 N 106 712 ? ? ? B . n B 2 107 N 107 713 ? ? ? B . n B 2 108 N 108 714 ? ? ? B . n B 2 109 N 109 715 ? ? ? B . n B 2 110 N 110 716 ? ? ? B . n B 2 111 N 111 717 ? ? ? B . n B 2 112 N 112 718 ? ? ? B . n B 2 113 N 113 719 ? ? ? B . n B 2 114 N 114 720 ? ? ? B . n B 2 115 N 115 721 ? ? ? B . n B 2 116 N 116 722 ? ? ? B . n B 2 117 N 117 723 ? ? ? B . n B 2 118 N 118 724 ? ? ? B . n B 2 119 N 119 725 ? ? ? B . n B 2 120 N 120 726 ? ? ? B . n B 2 121 N 121 727 ? ? ? B . n B 2 122 N 122 728 ? ? ? B . n B 2 123 N 123 729 ? ? ? B . n B 2 124 N 124 730 ? ? ? B . n B 2 125 N 125 731 ? ? ? B . n B 2 126 N 126 732 ? ? ? B . n B 2 127 N 127 733 ? ? ? B . n B 2 128 N 128 734 ? ? ? B . n B 2 129 N 129 735 ? ? ? B . n B 2 130 N 130 736 ? ? ? B . n B 2 131 N 131 737 ? ? ? B . n B 2 132 N 132 738 ? ? ? B . n B 2 133 N 133 739 ? ? ? B . n B 2 134 N 134 740 ? ? ? B . n B 2 135 N 135 741 ? ? ? B . n B 2 136 N 136 742 ? ? ? B . n B 2 137 N 137 743 ? ? ? B . n B 2 138 N 138 744 ? ? ? B . n B 2 139 N 139 745 ? ? ? B . n B 2 140 N 140 746 ? ? ? B . n B 2 141 N 141 747 ? ? ? B . n B 2 142 N 142 748 ? ? ? B . n B 2 143 N 143 749 ? ? ? B . n B 2 144 N 144 750 ? ? ? B . n B 2 145 N 145 751 ? ? ? B . n B 2 146 N 146 752 ? ? ? B . n B 2 147 N 147 753 ? ? ? B . n B 2 148 N 148 754 ? ? ? B . n B 2 149 N 149 755 ? ? ? B . n B 2 150 N 150 756 ? ? ? B . n B 2 151 N 151 757 ? ? ? B . n B 2 152 N 152 758 ? ? ? B . n B 2 153 N 153 759 ? ? ? B . n B 2 154 N 154 760 ? ? ? B . n B 2 155 N 155 761 ? ? ? B . n B 2 156 N 156 762 ? ? ? B . n B 2 157 N 157 763 ? ? ? B . n B 2 158 N 158 764 ? ? ? B . n B 2 159 N 159 765 ? ? ? B . n B 2 160 N 160 766 ? ? ? B . n B 2 161 N 161 767 ? ? ? B . n B 2 162 N 162 768 ? ? ? B . n B 2 163 N 163 769 ? ? ? B . n B 2 164 N 164 770 ? ? ? B . n B 2 165 N 165 771 ? ? ? B . n B 2 166 N 166 772 ? ? ? B . n B 2 167 N 167 773 ? ? ? B . n B 2 168 N 168 774 ? ? ? B . n B 2 169 N 169 775 ? ? ? B . n B 2 170 N 170 776 ? ? ? B . n B 2 171 N 171 777 ? ? ? B . n B 2 172 N 172 778 ? ? ? B . n B 2 173 N 173 779 ? ? ? B . n B 2 174 N 174 780 ? ? ? B . n B 2 175 N 175 781 ? ? ? B . n B 2 176 N 176 782 ? ? ? B . n B 2 177 N 177 783 ? ? ? B . n B 2 178 N 178 784 ? ? ? B . n B 2 179 N 179 785 ? ? ? B . n B 2 180 N 180 786 ? ? ? B . n B 2 181 N 181 787 ? ? ? B . n B 2 182 N 182 788 ? ? ? B . n B 2 183 N 183 789 ? ? ? B . n B 2 184 N 184 790 ? ? ? B . n B 2 185 N 185 791 ? ? ? B . n B 2 186 N 186 792 ? ? ? B . n B 2 187 N 187 793 ? ? ? B . n B 2 188 N 188 794 ? ? ? B . n B 2 189 N 189 795 ? ? ? B . n B 2 190 N 190 796 ? ? ? B . n B 2 191 N 191 797 ? ? ? B . n B 2 192 N 192 798 ? ? ? B . n B 2 193 N 193 799 ? ? ? B . n B 2 194 DG 194 800 ? ? ? B . n B 2 195 DA 195 801 801 DA DA B . n B 2 196 DA 196 802 802 DA DA B . n B 2 197 DT 197 803 803 DT DT B . n B 2 198 DA 198 804 804 DA DA B . n B 2 199 DA 199 805 805 DA DA B . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 324 ? CG ? A GLU 278 CG 2 1 Y 1 A GLU 324 ? CD ? A GLU 278 CD 3 1 Y 1 A GLU 324 ? OE1 ? A GLU 278 OE1 4 1 Y 1 A GLU 324 ? OE2 ? A GLU 278 OE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10_2155: 1 ? 'model building' ? ? ? ? ? ? ? ? ? https://www.rbvi.ucsf.edu/chimerax/ ? 'UCSF ChimeraX' Windows ? package 1.4/v9 2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8ER8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8ER8 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.010 ? 320580 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.836 ? 579120 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 12.919 ? 165720 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.056 ? 25200 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.006 ? 50040 ? f_plane_restr ? ? # _struct.entry_id 8ER8 _struct.title 'Acheta domesticus segmented densovirus, mature virion capsid structure' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8ER8 _struct_keywords.text 'parvovirus, densovirus, virus capsid, virion, insect virus, capsid, invertebrate, VIRUS-DNA complex' _struct_keywords.pdbx_keywords VIRUS/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8ER8 8ER8 ? 1 ? 1 2 PDB 8ER8 8ER8 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8ER8 A 1 ? 330 ? 8ER8 47 ? 376 ? 47 376 2 2 8ER8 B 1 ? 199 ? 8ER8 606 ? 805 ? 606 805 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 120-meric 120 2 'icosahedral asymmetric unit' ? dimeric 2 3 'icosahedral pentamer' ? decameric 10 4 'icosahedral 23 hexamer' ? dodecameric 12 5 'icosahedral asymmetric unit, std point frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B 2 1 A,B 3 '(1-5)' A,B 4 '(1,2,6,10,23,24)' A,B 5 P A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.30901699 -0.80901699 -0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901700 0.00000 0.50000000 0.30901699 -0.80901699 0.00000 0.30901699 0.80901700 0.50000000 0.00000 3 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901700 0.00000 0.30901699 -0.80901700 -0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 4 'point symmetry operation' ? ? 0.50000000 0.30901700 0.80901699 0.00000 -0.30901700 -0.80901699 0.50000000 0.00000 0.80901699 -0.50000000 -0.30901700 0.00000 5 'point symmetry operation' ? ? 0.80901700 0.50000000 0.30901699 0.00000 -0.50000000 0.30901700 0.80901699 0.00000 0.30901699 -0.80901699 0.50000000 0.00000 6 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901699 0.00000 -0.30901700 -0.80901699 -0.50000001 0.00000 0.80901700 -0.49999999 0.30901699 0.00000 7 'point symmetry operation' ? ? -0.30901699 0.80901700 0.50000000 0.00000 -0.80901700 -0.50000000 0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 8 'point symmetry operation' ? ? 0.30901700 0.80901699 -0.50000000 0.00000 -0.80901699 0.50000000 0.30901699 0.00000 0.50000000 0.30901699 0.80901700 0.00000 9 'point symmetry operation' ? ? 0.50000000 -0.30901700 -0.80901699 0.00000 -0.30901700 0.80901699 -0.50000000 0.00000 0.80901699 0.50000000 0.30901700 0.00000 10 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 11 'point symmetry operation' ? ? 0.30901699 0.80901700 -0.49999999 0.00000 0.80901699 -0.50000000 -0.30901699 0.00000 -0.50000001 -0.30901700 -0.80901699 0.00000 12 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901700 0.00000 0.30901700 -0.80901699 0.50000000 0.00000 -0.80901700 -0.50000000 -0.30901700 0.00000 13 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 14 'point symmetry operation' ? ? -0.50000000 -0.30901700 0.80901699 0.00000 0.30901700 0.80901699 0.50000000 0.00000 -0.80901699 0.50000000 -0.30901700 0.00000 15 'point symmetry operation' ? ? -0.30901699 0.80901699 0.50000000 0.00000 0.80901700 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901700 0.00000 16 'point symmetry operation' ? ? -0.80901699 -0.50000001 -0.30901700 0.00000 -0.49999999 0.30901699 0.80901700 0.00000 -0.30901699 0.80901699 -0.50000000 0.00000 17 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 18 'point symmetry operation' ? ? -0.80901700 0.50000000 -0.30901699 0.00000 0.50000000 0.30901700 -0.80901699 0.00000 -0.30901700 -0.80901700 -0.50000000 0.00000 19 'point symmetry operation' ? ? -0.50000000 0.30901700 -0.80901699 0.00000 0.30901700 -0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000000 0.30901700 0.00000 20 'point symmetry operation' ? ? -0.50000000 -0.30901700 -0.80901700 0.00000 -0.30901699 -0.80901700 0.50000000 0.00000 -0.80901699 0.50000000 0.30901700 0.00000 21 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 0.00000 -0.50000001 -0.30901700 -0.80901699 0.00000 0.30901699 0.80901700 -0.49999999 0.00000 22 'point symmetry operation' ? ? 0.30901700 -0.80901699 0.50000000 0.00000 -0.80901700 -0.50000000 -0.30901700 0.00000 0.50000000 -0.30901699 -0.80901700 0.00000 23 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 24 'point symmetry operation' ? ? 0.30901700 0.80901699 0.50000000 0.00000 -0.80901699 0.50000000 -0.30901700 0.00000 -0.50000000 -0.30901700 0.80901699 0.00000 25 'point symmetry operation' ? ? 0.80901700 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901700 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 26 'point symmetry operation' ? ? -0.49999999 0.30901699 0.80901700 0.00000 -0.30901699 0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000001 -0.30901700 0.00000 27 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 28 'point symmetry operation' ? ? 0.50000000 0.30901700 -0.80901699 0.00000 -0.30901700 -0.80901700 -0.50000000 0.00000 -0.80901700 0.50000000 -0.30901699 0.00000 29 'point symmetry operation' ? ? 0.30901700 -0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000000 0.30901700 0.00000 -0.50000000 0.30901700 -0.80901699 0.00000 30 'point symmetry operation' ? ? -0.30901699 -0.80901700 0.50000000 0.00000 -0.80901699 0.50000000 0.30901700 0.00000 -0.50000000 -0.30901700 -0.80901700 0.00000 31 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 32 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 0.00000 0.30901699 0.80901700 0.50000000 0.00000 0.80901699 -0.50000000 0.30901700 0.00000 33 'point symmetry operation' ? ? 0.30901699 -0.80901700 -0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901700 0.00000 34 'point symmetry operation' ? ? -0.30901700 -0.80901699 0.50000000 0.00000 0.80901699 -0.50000000 -0.30901700 0.00000 0.50000000 0.30901700 0.80901699 0.00000 35 'point symmetry operation' ? ? -0.50000000 0.30901700 0.80901699 0.00000 0.30901699 -0.80901699 0.50000000 0.00000 0.80901700 0.50000000 0.30901699 0.00000 36 'point symmetry operation' ? ? -0.30901700 -0.80901699 -0.50000001 0.00000 0.80901700 -0.49999999 0.30901699 0.00000 -0.50000000 -0.30901699 0.80901699 0.00000 37 'point symmetry operation' ? ? -0.80901700 -0.50000000 0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901700 0.50000000 0.00000 38 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901699 0.00000 0.50000000 0.30901699 0.80901700 0.00000 0.30901700 0.80901699 -0.50000000 0.00000 39 'point symmetry operation' ? ? -0.30901700 0.80901699 -0.50000000 0.00000 0.80901699 0.50000000 0.30901700 0.00000 0.50000000 -0.30901700 -0.80901699 0.00000 40 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 41 'point symmetry operation' ? ? 0.80901700 -0.49999999 0.30901699 0.00000 -0.50000000 -0.30901699 0.80901699 0.00000 -0.30901700 -0.80901699 -0.50000001 0.00000 42 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901700 0.50000000 0.00000 -0.80901700 -0.50000000 0.30901699 0.00000 43 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901700 0.00000 0.30901700 0.80901699 -0.50000000 0.00000 -0.80901699 0.50000000 0.30901699 0.00000 44 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901700 0.00000 0.50000000 -0.30901700 -0.80901699 0.00000 -0.30901700 0.80901699 -0.50000000 0.00000 45 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 46 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 47 'point symmetry operation' ? ? 0.30901699 0.80901700 0.50000000 0.00000 0.80901699 -0.50000000 0.30901700 0.00000 0.50000000 0.30901699 -0.80901699 0.00000 48 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901700 0.00000 0.30901699 -0.80901700 -0.50000000 0.00000 49 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901700 0.00000 0.50000000 0.30901700 0.80901699 0.00000 -0.30901700 -0.80901699 0.50000000 0.00000 50 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.50000000 0.00000 0.80901700 0.50000000 0.30901699 0.00000 -0.50000000 0.30901700 0.80901699 0.00000 51 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000001 -0.30901700 0.00000 -0.49999999 0.30901699 0.80901700 0.00000 52 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 53 'point symmetry operation' ? ? -0.30901700 -0.80901700 -0.50000000 0.00000 -0.80901700 0.50000000 -0.30901699 0.00000 0.50000000 0.30901700 -0.80901699 0.00000 54 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901700 0.00000 -0.50000000 0.30901700 -0.80901699 0.00000 0.30901700 -0.80901699 -0.50000000 0.00000 55 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901700 0.00000 -0.50000000 -0.30901700 -0.80901700 0.00000 -0.30901699 -0.80901700 0.50000000 0.00000 56 'point symmetry operation' ? ? -0.50000001 -0.30901700 -0.80901699 0.00000 0.30901699 0.80901700 -0.49999999 0.00000 0.80901699 -0.50000000 -0.30901699 0.00000 57 'point symmetry operation' ? ? -0.80901700 -0.50000000 -0.30901700 0.00000 0.50000000 -0.30901699 -0.80901700 0.00000 0.30901700 -0.80901699 0.50000000 0.00000 58 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 59 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901700 0.00000 -0.50000000 -0.30901700 0.80901699 0.00000 0.30901700 0.80901699 0.50000000 0.00000 60 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901700 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 0.80901700 0.50000000 -0.30901699 0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 70 ? ILE A 82 ? ASN A 116 ILE A 128 1 ? 13 HELX_P HELX_P2 AA2 GLY A 216 ? GLN A 220 ? GLY A 262 GLN A 266 5 ? 5 HELX_P HELX_P3 AA3 ASN A 287 ? ARG A 292 ? ASN A 333 ARG A 338 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? parallel AA6 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ILE A 25 ? ASP A 38 ? ILE A 71 ASP A 84 AA1 2 LYS A 264 ? ILE A 281 ? LYS A 310 ILE A 327 AA1 3 SER A 83 ? THR A 108 ? SER A 129 THR A 154 AA1 4 THR A 111 ? PHE A 118 ? THR A 157 PHE A 164 AA2 1 ILE A 25 ? ASP A 38 ? ILE A 71 ASP A 84 AA2 2 LYS A 264 ? ILE A 281 ? LYS A 310 ILE A 327 AA2 3 SER A 83 ? THR A 108 ? SER A 129 THR A 154 AA2 4 LYS A 174 ? TRP A 179 ? LYS A 220 TRP A 225 AA3 1 LYS A 51 ? ILE A 53 ? LYS A 97 ILE A 99 AA3 2 ARG A 248 ? SER A 252 ? ARG A 294 SER A 298 AA3 3 LEU A 124 ? ALA A 129 ? LEU A 170 ALA A 175 AA3 4 ILE A 164 ? VAL A 169 ? ILE A 210 VAL A 215 AA4 1 GLU A 134 ? ILE A 138 ? GLU A 180 ILE A 184 AA4 2 ARG A 307 ? CYS A 311 ? ARG A 353 CYS A 357 AA5 1 LEU A 189 ? TRP A 190 ? LEU A 235 TRP A 236 AA5 2 THR A 294 ? LEU A 295 ? THR A 340 LEU A 341 AA6 1 ILE A 222 ? ILE A 224 ? ILE A 268 ILE A 270 AA6 2 THR A 238 ? ILE A 240 ? THR A 284 ILE A 286 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 25 ? N ILE A 71 O HIS A 279 ? O HIS A 325 AA1 2 3 O SER A 272 ? O SER A 318 N CYS A 94 ? N CYS A 140 AA1 3 4 N ILE A 106 ? N ILE A 152 O TYR A 113 ? O TYR A 159 AA2 1 2 N ILE A 25 ? N ILE A 71 O HIS A 279 ? O HIS A 325 AA2 2 3 O SER A 272 ? O SER A 318 N CYS A 94 ? N CYS A 140 AA2 3 4 N ALA A 91 ? N ALA A 137 O TRP A 179 ? O TRP A 225 AA3 1 2 N LYS A 51 ? N LYS A 97 O LEU A 251 ? O LEU A 297 AA3 2 3 O SER A 252 ? O SER A 298 N PHE A 125 ? N PHE A 171 AA3 3 4 N ILE A 126 ? N ILE A 172 O GLU A 167 ? O GLU A 213 AA4 1 2 N ILE A 138 ? N ILE A 184 O ARG A 307 ? O ARG A 353 AA5 1 2 N LEU A 189 ? N LEU A 235 O LEU A 295 ? O LEU A 341 AA6 1 2 N VAL A 223 ? N VAL A 269 O THR A 239 ? O THR A 285 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ASP 226 ? ? HH12 A ARG 290 ? ? 1.42 2 1 O A LYS 76 ? ? HD22 A ASN 116 ? ? 1.52 3 1 H A GLU 237 ? ? O A LEU 341 ? ? 1.53 4 1 O A LYS 97 ? ? H A LEU 297 ? ? 1.53 5 1 HE21 A GLN 266 ? ? O A ILE 268 ? ? 1.55 6 1 HE21 A GLN 102 ? ? O A PRO 293 ? ? 1.56 7 1 O A ILE 128 ? ? H A LYS 328 ? ? 1.57 8 1 H A VAL 132 ? ? O A TRP 236 ? ? 1.57 9 1 H A ASP 304 ? ? O A ASP 307 ? ? 1.59 10 1 O A LYS 76 ? ? ND2 A ASN 116 ? ? 1.98 11 1 NE2 A GLN 102 ? ? O A PRO 293 ? ? 2.05 12 1 O A VAL 197 ? ? OG1 A THR 200 ? ? 2.05 13 1 OE2 A GLU 237 ? ? NZ A LYS 273 ? ? 2.08 14 1 NH2 A ARG 133 ? ? OD2 A ASP 228 ? ? 2.10 15 1 O A GLY 91 ? ? NZ A LYS 97 ? ? 2.12 16 1 OD1 A ASP 84 ? ? OG1 A THR 86 ? ? 2.16 17 1 O A ASP 226 ? ? NH1 A ARG 290 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" B DG 606 ? ? "C5'" B DG 606 ? ? "C4'" B DG 606 ? ? 103.84 109.40 -5.56 0.80 N 2 1 "C5'" B DG 606 ? ? "C4'" B DG 606 ? ? "O4'" B DG 606 ? ? 121.17 109.80 11.37 1.10 N 3 1 "C1'" B DG 606 ? ? "O4'" B DG 606 ? ? "C4'" B DG 606 ? ? 96.20 110.10 -13.90 1.00 N 4 1 "O4'" B DG 606 ? ? "C1'" B DG 606 ? ? N9 B DG 606 ? ? 111.67 108.30 3.37 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 90 ? ? 51.17 -116.26 2 1 THR A 93 ? ? -171.11 -178.83 3 1 THR A 185 ? ? -128.33 -62.29 4 1 ASN A 206 ? ? -121.86 -72.92 5 1 PRO A 293 ? ? -61.99 -176.02 6 1 ASP A 307 ? ? 51.92 -144.54 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 VAL _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 229 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 LEU _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 230 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -146.71 # _pdbx_point_symmetry.entry_id 8ER8 _pdbx_point_symmetry.Schoenflies_symbol I # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8ER8 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 3UX1 _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 3UX1 # _em_3d_reconstruction.entry_id 8ER8 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 150469 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 5 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.name 'unclassified Densovirinae' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 8ER8 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode OTHER _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 650 _em_imaging.nominal_defocus_max 4000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source OTHER _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate SPECIES _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty NO _em_virus_entity.details ? # _em_vitrification.entry_id 8ER8 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 90 _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8ER8 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8ER8 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B N 608 ? B N 2 2 1 Y 1 B N 609 ? B N 3 3 1 Y 1 B N 610 ? B N 4 4 1 Y 1 B N 611 ? B N 5 5 1 Y 1 B N 612 ? B N 6 6 1 Y 1 B N 613 ? B N 7 7 1 Y 1 B N 614 ? B N 8 8 1 Y 1 B N 615 ? B N 9 9 1 Y 1 B N 616 ? B N 10 10 1 Y 1 B N 617 ? B N 11 11 1 Y 1 B N 618 ? B N 12 12 1 Y 1 B N 619 ? B N 13 13 1 Y 1 B N 620 ? B N 14 14 1 Y 1 B N 621 ? B N 15 15 1 Y 1 B N 622 ? B N 16 16 1 Y 1 B N 623 ? B N 17 17 1 Y 1 B N 624 ? B N 18 18 1 Y 1 B N 625 ? B N 19 19 1 Y 1 B N 626 ? B N 20 20 1 Y 1 B N 627 ? B N 21 21 1 Y 1 B N 628 ? B N 22 22 1 Y 1 B N 629 ? B N 23 23 1 Y 1 B N 630 ? B N 24 24 1 Y 1 B N 631 ? B N 25 25 1 Y 1 B N 632 ? B N 26 26 1 Y 1 B N 633 ? B N 27 27 1 Y 1 B N 634 ? B N 28 28 1 Y 1 B N 635 ? B N 29 29 1 Y 1 B N 636 ? B N 30 30 1 Y 1 B N 637 ? B N 31 31 1 Y 1 B N 638 ? B N 32 32 1 Y 1 B N 639 ? B N 33 33 1 Y 1 B N 640 ? B N 34 34 1 Y 1 B N 641 ? B N 35 35 1 Y 1 B N 642 ? B N 36 36 1 Y 1 B N 643 ? B N 37 37 1 Y 1 B N 644 ? B N 38 38 1 Y 1 B N 645 ? B N 39 39 1 Y 1 B N 646 ? B N 40 40 1 Y 1 B N 647 ? B N 41 41 1 Y 1 B N 648 ? B N 42 42 1 Y 1 B N 649 ? B N 43 43 1 Y 1 B N 650 ? B N 44 44 1 Y 1 B N 651 ? B N 45 45 1 Y 1 B N 652 ? B N 46 46 1 Y 1 B N 653 ? B N 47 47 1 Y 1 B N 654 ? B N 48 48 1 Y 1 B N 655 ? B N 49 49 1 Y 1 B N 656 ? B N 50 50 1 Y 1 B N 657 ? B N 51 51 1 Y 1 B N 658 ? B N 52 52 1 Y 1 B N 659 ? B N 53 53 1 Y 1 B N 660 ? B N 54 54 1 Y 1 B N 661 ? B N 55 55 1 Y 1 B N 662 ? B N 56 56 1 Y 1 B N 663 ? B N 57 57 1 Y 1 B N 664 ? B N 58 58 1 Y 1 B N 665 ? B N 59 59 1 Y 1 B N 666 ? B N 60 60 1 Y 1 B N 667 ? B N 61 61 1 Y 1 B N 668 ? B N 62 62 1 Y 1 B N 669 ? B N 63 63 1 Y 1 B N 670 ? B N 64 64 1 Y 1 B N 671 ? B N 65 65 1 Y 1 B N 672 ? B N 66 66 1 Y 1 B N 673 ? B N 67 67 1 Y 1 B N 674 ? B N 68 68 1 Y 1 B N 675 ? B N 69 69 1 Y 1 B N 676 ? B N 70 70 1 Y 1 B N 677 ? B N 71 71 1 Y 1 B N 678 ? B N 72 72 1 Y 1 B N 679 ? B N 73 73 1 Y 1 B N 680 ? B N 74 74 1 Y 1 B N 681 ? B N 75 75 1 Y 1 B N 682 ? B N 76 76 1 Y 1 B N 683 ? B N 77 77 1 Y 1 B N 684 ? B N 78 78 1 Y 1 B N 685 ? B N 79 79 1 Y 1 B N 686 ? B N 80 80 1 Y 1 B N 687 ? B N 81 81 1 Y 1 B N 688 ? B N 82 82 1 Y 1 B N 689 ? B N 83 83 1 Y 1 B N 690 ? B N 84 84 1 Y 1 B N 691 ? B N 85 85 1 Y 1 B N 692 ? B N 86 86 1 Y 1 B N 693 ? B N 87 87 1 Y 1 B N 694 ? B N 88 88 1 Y 1 B N 695 ? B N 89 89 1 Y 1 B N 696 ? B N 90 90 1 Y 1 B N 697 ? B N 91 91 1 Y 1 B N 698 ? B N 92 92 1 Y 1 B N 699 ? B N 93 93 1 Y 1 B N 700 ? B N 94 94 1 Y 1 B N 701 ? B N 95 95 1 Y 1 B N 702 ? B N 96 96 1 Y 1 B N 703 ? B N 97 97 1 Y 1 B N 704 ? B N 98 98 1 Y 1 B N 705 ? B N 99 99 1 Y 1 B N 706 ? B N 100 100 1 Y 1 B N 707 ? B N 101 101 1 Y 1 B N 708 ? B N 102 102 1 Y 1 B N 709 ? B N 103 103 1 Y 1 B N 710 ? B N 104 104 1 Y 1 B N 711 ? B N 105 105 1 Y 1 B N 712 ? B N 106 106 1 Y 1 B N 713 ? B N 107 107 1 Y 1 B N 714 ? B N 108 108 1 Y 1 B N 715 ? B N 109 109 1 Y 1 B N 716 ? B N 110 110 1 Y 1 B N 717 ? B N 111 111 1 Y 1 B N 718 ? B N 112 112 1 Y 1 B N 719 ? B N 113 113 1 Y 1 B N 720 ? B N 114 114 1 Y 1 B N 721 ? B N 115 115 1 Y 1 B N 722 ? B N 116 116 1 Y 1 B N 723 ? B N 117 117 1 Y 1 B N 724 ? B N 118 118 1 Y 1 B N 725 ? B N 119 119 1 Y 1 B N 726 ? B N 120 120 1 Y 1 B N 727 ? B N 121 121 1 Y 1 B N 728 ? B N 122 122 1 Y 1 B N 729 ? B N 123 123 1 Y 1 B N 730 ? B N 124 124 1 Y 1 B N 731 ? B N 125 125 1 Y 1 B N 732 ? B N 126 126 1 Y 1 B N 733 ? B N 127 127 1 Y 1 B N 734 ? B N 128 128 1 Y 1 B N 735 ? B N 129 129 1 Y 1 B N 736 ? B N 130 130 1 Y 1 B N 737 ? B N 131 131 1 Y 1 B N 738 ? B N 132 132 1 Y 1 B N 739 ? B N 133 133 1 Y 1 B N 740 ? B N 134 134 1 Y 1 B N 741 ? B N 135 135 1 Y 1 B N 742 ? B N 136 136 1 Y 1 B N 743 ? B N 137 137 1 Y 1 B N 744 ? B N 138 138 1 Y 1 B N 745 ? B N 139 139 1 Y 1 B N 746 ? B N 140 140 1 Y 1 B N 747 ? B N 141 141 1 Y 1 B N 748 ? B N 142 142 1 Y 1 B N 749 ? B N 143 143 1 Y 1 B N 750 ? B N 144 144 1 Y 1 B N 751 ? B N 145 145 1 Y 1 B N 752 ? B N 146 146 1 Y 1 B N 753 ? B N 147 147 1 Y 1 B N 754 ? B N 148 148 1 Y 1 B N 755 ? B N 149 149 1 Y 1 B N 756 ? B N 150 150 1 Y 1 B N 757 ? B N 151 151 1 Y 1 B N 758 ? B N 152 152 1 Y 1 B N 759 ? B N 153 153 1 Y 1 B N 760 ? B N 154 154 1 Y 1 B N 761 ? B N 155 155 1 Y 1 B N 762 ? B N 156 156 1 Y 1 B N 763 ? B N 157 157 1 Y 1 B N 764 ? B N 158 158 1 Y 1 B N 765 ? B N 159 159 1 Y 1 B N 766 ? B N 160 160 1 Y 1 B N 767 ? B N 161 161 1 Y 1 B N 768 ? B N 162 162 1 Y 1 B N 769 ? B N 163 163 1 Y 1 B N 770 ? B N 164 164 1 Y 1 B N 771 ? B N 165 165 1 Y 1 B N 772 ? B N 166 166 1 Y 1 B N 773 ? B N 167 167 1 Y 1 B N 774 ? B N 168 168 1 Y 1 B N 775 ? B N 169 169 1 Y 1 B N 776 ? B N 170 170 1 Y 1 B N 777 ? B N 171 171 1 Y 1 B N 778 ? B N 172 172 1 Y 1 B N 779 ? B N 173 173 1 Y 1 B N 780 ? B N 174 174 1 Y 1 B N 781 ? B N 175 175 1 Y 1 B N 782 ? B N 176 176 1 Y 1 B N 783 ? B N 177 177 1 Y 1 B N 784 ? B N 178 178 1 Y 1 B N 785 ? B N 179 179 1 Y 1 B N 786 ? B N 180 180 1 Y 1 B N 787 ? B N 181 181 1 Y 1 B N 788 ? B N 182 182 1 Y 1 B N 789 ? B N 183 183 1 Y 1 B N 790 ? B N 184 184 1 Y 1 B N 791 ? B N 185 185 1 Y 1 B N 792 ? B N 186 186 1 Y 1 B N 793 ? B N 187 187 1 Y 1 B N 794 ? B N 188 188 1 Y 1 B N 795 ? B N 189 189 1 Y 1 B N 796 ? B N 190 190 1 Y 1 B N 797 ? B N 191 191 1 Y 1 B N 798 ? B N 192 192 1 Y 1 B N 799 ? B N 193 193 1 Y 1 B DG 800 ? B DG 194 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DG OP3 O N N 124 DG P P N N 125 DG OP1 O N N 126 DG OP2 O N N 127 DG "O5'" O N N 128 DG "C5'" C N N 129 DG "C4'" C N R 130 DG "O4'" O N N 131 DG "C3'" C N S 132 DG "O3'" O N N 133 DG "C2'" C N N 134 DG "C1'" C N R 135 DG N9 N Y N 136 DG C8 C Y N 137 DG N7 N Y N 138 DG C5 C Y N 139 DG C6 C N N 140 DG O6 O N N 141 DG N1 N N N 142 DG C2 C N N 143 DG N2 N N N 144 DG N3 N N N 145 DG C4 C Y N 146 DG HOP3 H N N 147 DG HOP2 H N N 148 DG "H5'" H N N 149 DG "H5''" H N N 150 DG "H4'" H N N 151 DG "H3'" H N N 152 DG "HO3'" H N N 153 DG "H2'" H N N 154 DG "H2''" H N N 155 DG "H1'" H N N 156 DG H8 H N N 157 DG H1 H N N 158 DG H21 H N N 159 DG H22 H N N 160 DT OP3 O N N 161 DT P P N N 162 DT OP1 O N N 163 DT OP2 O N N 164 DT "O5'" O N N 165 DT "C5'" C N N 166 DT "C4'" C N R 167 DT "O4'" O N N 168 DT "C3'" C N S 169 DT "O3'" O N N 170 DT "C2'" C N N 171 DT "C1'" C N R 172 DT N1 N N N 173 DT C2 C N N 174 DT O2 O N N 175 DT N3 N N N 176 DT C4 C N N 177 DT O4 O N N 178 DT C5 C N N 179 DT C7 C N N 180 DT C6 C N N 181 DT HOP3 H N N 182 DT HOP2 H N N 183 DT "H5'" H N N 184 DT "H5''" H N N 185 DT "H4'" H N N 186 DT "H3'" H N N 187 DT "HO3'" H N N 188 DT "H2'" H N N 189 DT "H2''" H N N 190 DT "H1'" H N N 191 DT H3 H N N 192 DT H71 H N N 193 DT H72 H N N 194 DT H73 H N N 195 DT H6 H N N 196 GLN N N N N 197 GLN CA C N S 198 GLN C C N N 199 GLN O O N N 200 GLN CB C N N 201 GLN CG C N N 202 GLN CD C N N 203 GLN OE1 O N N 204 GLN NE2 N N N 205 GLN OXT O N N 206 GLN H H N N 207 GLN H2 H N N 208 GLN HA H N N 209 GLN HB2 H N N 210 GLN HB3 H N N 211 GLN HG2 H N N 212 GLN HG3 H N N 213 GLN HE21 H N N 214 GLN HE22 H N N 215 GLN HXT H N N 216 GLU N N N N 217 GLU CA C N S 218 GLU C C N N 219 GLU O O N N 220 GLU CB C N N 221 GLU CG C N N 222 GLU CD C N N 223 GLU OE1 O N N 224 GLU OE2 O N N 225 GLU OXT O N N 226 GLU H H N N 227 GLU H2 H N N 228 GLU HA H N N 229 GLU HB2 H N N 230 GLU HB3 H N N 231 GLU HG2 H N N 232 GLU HG3 H N N 233 GLU HE2 H N N 234 GLU HXT H N N 235 GLY N N N N 236 GLY CA C N N 237 GLY C C N N 238 GLY O O N N 239 GLY OXT O N N 240 GLY H H N N 241 GLY H2 H N N 242 GLY HA2 H N N 243 GLY HA3 H N N 244 GLY HXT H N N 245 HIS N N N N 246 HIS CA C N S 247 HIS C C N N 248 HIS O O N N 249 HIS CB C N N 250 HIS CG C Y N 251 HIS ND1 N Y N 252 HIS CD2 C Y N 253 HIS CE1 C Y N 254 HIS NE2 N Y N 255 HIS OXT O N N 256 HIS H H N N 257 HIS H2 H N N 258 HIS HA H N N 259 HIS HB2 H N N 260 HIS HB3 H N N 261 HIS HD1 H N N 262 HIS HD2 H N N 263 HIS HE1 H N N 264 HIS HE2 H N N 265 HIS HXT H N N 266 ILE N N N N 267 ILE CA C N S 268 ILE C C N N 269 ILE O O N N 270 ILE CB C N S 271 ILE CG1 C N N 272 ILE CG2 C N N 273 ILE CD1 C N N 274 ILE OXT O N N 275 ILE H H N N 276 ILE H2 H N N 277 ILE HA H N N 278 ILE HB H N N 279 ILE HG12 H N N 280 ILE HG13 H N N 281 ILE HG21 H N N 282 ILE HG22 H N N 283 ILE HG23 H N N 284 ILE HD11 H N N 285 ILE HD12 H N N 286 ILE HD13 H N N 287 ILE HXT H N N 288 LEU N N N N 289 LEU CA C N S 290 LEU C C N N 291 LEU O O N N 292 LEU CB C N N 293 LEU CG C N N 294 LEU CD1 C N N 295 LEU CD2 C N N 296 LEU OXT O N N 297 LEU H H N N 298 LEU H2 H N N 299 LEU HA H N N 300 LEU HB2 H N N 301 LEU HB3 H N N 302 LEU HG H N N 303 LEU HD11 H N N 304 LEU HD12 H N N 305 LEU HD13 H N N 306 LEU HD21 H N N 307 LEU HD22 H N N 308 LEU HD23 H N N 309 LEU HXT H N N 310 LYS N N N N 311 LYS CA C N S 312 LYS C C N N 313 LYS O O N N 314 LYS CB C N N 315 LYS CG C N N 316 LYS CD C N N 317 LYS CE C N N 318 LYS NZ N N N 319 LYS OXT O N N 320 LYS H H N N 321 LYS H2 H N N 322 LYS HA H N N 323 LYS HB2 H N N 324 LYS HB3 H N N 325 LYS HG2 H N N 326 LYS HG3 H N N 327 LYS HD2 H N N 328 LYS HD3 H N N 329 LYS HE2 H N N 330 LYS HE3 H N N 331 LYS HZ1 H N N 332 LYS HZ2 H N N 333 LYS HZ3 H N N 334 LYS HXT H N N 335 MET N N N N 336 MET CA C N S 337 MET C C N N 338 MET O O N N 339 MET CB C N N 340 MET CG C N N 341 MET SD S N N 342 MET CE C N N 343 MET OXT O N N 344 MET H H N N 345 MET H2 H N N 346 MET HA H N N 347 MET HB2 H N N 348 MET HB3 H N N 349 MET HG2 H N N 350 MET HG3 H N N 351 MET HE1 H N N 352 MET HE2 H N N 353 MET HE3 H N N 354 MET HXT H N N 355 PHE N N N N 356 PHE CA C N S 357 PHE C C N N 358 PHE O O N N 359 PHE CB C N N 360 PHE CG C Y N 361 PHE CD1 C Y N 362 PHE CD2 C Y N 363 PHE CE1 C Y N 364 PHE CE2 C Y N 365 PHE CZ C Y N 366 PHE OXT O N N 367 PHE H H N N 368 PHE H2 H N N 369 PHE HA H N N 370 PHE HB2 H N N 371 PHE HB3 H N N 372 PHE HD1 H N N 373 PHE HD2 H N N 374 PHE HE1 H N N 375 PHE HE2 H N N 376 PHE HZ H N N 377 PHE HXT H N N 378 PRO N N N N 379 PRO CA C N S 380 PRO C C N N 381 PRO O O N N 382 PRO CB C N N 383 PRO CG C N N 384 PRO CD C N N 385 PRO OXT O N N 386 PRO H H N N 387 PRO HA H N N 388 PRO HB2 H N N 389 PRO HB3 H N N 390 PRO HG2 H N N 391 PRO HG3 H N N 392 PRO HD2 H N N 393 PRO HD3 H N N 394 PRO HXT H N N 395 SER N N N N 396 SER CA C N S 397 SER C C N N 398 SER O O N N 399 SER CB C N N 400 SER OG O N N 401 SER OXT O N N 402 SER H H N N 403 SER H2 H N N 404 SER HA H N N 405 SER HB2 H N N 406 SER HB3 H N N 407 SER HG H N N 408 SER HXT H N N 409 THR N N N N 410 THR CA C N S 411 THR C C N N 412 THR O O N N 413 THR CB C N R 414 THR OG1 O N N 415 THR CG2 C N N 416 THR OXT O N N 417 THR H H N N 418 THR H2 H N N 419 THR HA H N N 420 THR HB H N N 421 THR HG1 H N N 422 THR HG21 H N N 423 THR HG22 H N N 424 THR HG23 H N N 425 THR HXT H N N 426 TRP N N N N 427 TRP CA C N S 428 TRP C C N N 429 TRP O O N N 430 TRP CB C N N 431 TRP CG C Y N 432 TRP CD1 C Y N 433 TRP CD2 C Y N 434 TRP NE1 N Y N 435 TRP CE2 C Y N 436 TRP CE3 C Y N 437 TRP CZ2 C Y N 438 TRP CZ3 C Y N 439 TRP CH2 C Y N 440 TRP OXT O N N 441 TRP H H N N 442 TRP H2 H N N 443 TRP HA H N N 444 TRP HB2 H N N 445 TRP HB3 H N N 446 TRP HD1 H N N 447 TRP HE1 H N N 448 TRP HE3 H N N 449 TRP HZ2 H N N 450 TRP HZ3 H N N 451 TRP HH2 H N N 452 TRP HXT H N N 453 TYR N N N N 454 TYR CA C N S 455 TYR C C N N 456 TYR O O N N 457 TYR CB C N N 458 TYR CG C Y N 459 TYR CD1 C Y N 460 TYR CD2 C Y N 461 TYR CE1 C Y N 462 TYR CE2 C Y N 463 TYR CZ C Y N 464 TYR OH O N N 465 TYR OXT O N N 466 TYR H H N N 467 TYR H2 H N N 468 TYR HA H N N 469 TYR HB2 H N N 470 TYR HB3 H N N 471 TYR HD1 H N N 472 TYR HD2 H N N 473 TYR HE1 H N N 474 TYR HE2 H N N 475 TYR HH H N N 476 TYR HXT H N N 477 VAL N N N N 478 VAL CA C N S 479 VAL C C N N 480 VAL O O N N 481 VAL CB C N N 482 VAL CG1 C N N 483 VAL CG2 C N N 484 VAL OXT O N N 485 VAL H H N N 486 VAL H2 H N N 487 VAL HA H N N 488 VAL HB H N N 489 VAL HG11 H N N 490 VAL HG12 H N N 491 VAL HG13 H N N 492 VAL HG21 H N N 493 VAL HG22 H N N 494 VAL HG23 H N N 495 VAL HXT H N N 496 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DG OP3 P sing N N 121 DG OP3 HOP3 sing N N 122 DG P OP1 doub N N 123 DG P OP2 sing N N 124 DG P "O5'" sing N N 125 DG OP2 HOP2 sing N N 126 DG "O5'" "C5'" sing N N 127 DG "C5'" "C4'" sing N N 128 DG "C5'" "H5'" sing N N 129 DG "C5'" "H5''" sing N N 130 DG "C4'" "O4'" sing N N 131 DG "C4'" "C3'" sing N N 132 DG "C4'" "H4'" sing N N 133 DG "O4'" "C1'" sing N N 134 DG "C3'" "O3'" sing N N 135 DG "C3'" "C2'" sing N N 136 DG "C3'" "H3'" sing N N 137 DG "O3'" "HO3'" sing N N 138 DG "C2'" "C1'" sing N N 139 DG "C2'" "H2'" sing N N 140 DG "C2'" "H2''" sing N N 141 DG "C1'" N9 sing N N 142 DG "C1'" "H1'" sing N N 143 DG N9 C8 sing Y N 144 DG N9 C4 sing Y N 145 DG C8 N7 doub Y N 146 DG C8 H8 sing N N 147 DG N7 C5 sing Y N 148 DG C5 C6 sing N N 149 DG C5 C4 doub Y N 150 DG C6 O6 doub N N 151 DG C6 N1 sing N N 152 DG N1 C2 sing N N 153 DG N1 H1 sing N N 154 DG C2 N2 sing N N 155 DG C2 N3 doub N N 156 DG N2 H21 sing N N 157 DG N2 H22 sing N N 158 DG N3 C4 sing N N 159 DT OP3 P sing N N 160 DT OP3 HOP3 sing N N 161 DT P OP1 doub N N 162 DT P OP2 sing N N 163 DT P "O5'" sing N N 164 DT OP2 HOP2 sing N N 165 DT "O5'" "C5'" sing N N 166 DT "C5'" "C4'" sing N N 167 DT "C5'" "H5'" sing N N 168 DT "C5'" "H5''" sing N N 169 DT "C4'" "O4'" sing N N 170 DT "C4'" "C3'" sing N N 171 DT "C4'" "H4'" sing N N 172 DT "O4'" "C1'" sing N N 173 DT "C3'" "O3'" sing N N 174 DT "C3'" "C2'" sing N N 175 DT "C3'" "H3'" sing N N 176 DT "O3'" "HO3'" sing N N 177 DT "C2'" "C1'" sing N N 178 DT "C2'" "H2'" sing N N 179 DT "C2'" "H2''" sing N N 180 DT "C1'" N1 sing N N 181 DT "C1'" "H1'" sing N N 182 DT N1 C2 sing N N 183 DT N1 C6 sing N N 184 DT C2 O2 doub N N 185 DT C2 N3 sing N N 186 DT N3 C4 sing N N 187 DT N3 H3 sing N N 188 DT C4 O4 doub N N 189 DT C4 C5 sing N N 190 DT C5 C7 sing N N 191 DT C5 C6 doub N N 192 DT C7 H71 sing N N 193 DT C7 H72 sing N N 194 DT C7 H73 sing N N 195 DT C6 H6 sing N N 196 GLN N CA sing N N 197 GLN N H sing N N 198 GLN N H2 sing N N 199 GLN CA C sing N N 200 GLN CA CB sing N N 201 GLN CA HA sing N N 202 GLN C O doub N N 203 GLN C OXT sing N N 204 GLN CB CG sing N N 205 GLN CB HB2 sing N N 206 GLN CB HB3 sing N N 207 GLN CG CD sing N N 208 GLN CG HG2 sing N N 209 GLN CG HG3 sing N N 210 GLN CD OE1 doub N N 211 GLN CD NE2 sing N N 212 GLN NE2 HE21 sing N N 213 GLN NE2 HE22 sing N N 214 GLN OXT HXT sing N N 215 GLU N CA sing N N 216 GLU N H sing N N 217 GLU N H2 sing N N 218 GLU CA C sing N N 219 GLU CA CB sing N N 220 GLU CA HA sing N N 221 GLU C O doub N N 222 GLU C OXT sing N N 223 GLU CB CG sing N N 224 GLU CB HB2 sing N N 225 GLU CB HB3 sing N N 226 GLU CG CD sing N N 227 GLU CG HG2 sing N N 228 GLU CG HG3 sing N N 229 GLU CD OE1 doub N N 230 GLU CD OE2 sing N N 231 GLU OE2 HE2 sing N N 232 GLU OXT HXT sing N N 233 GLY N CA sing N N 234 GLY N H sing N N 235 GLY N H2 sing N N 236 GLY CA C sing N N 237 GLY CA HA2 sing N N 238 GLY CA HA3 sing N N 239 GLY C O doub N N 240 GLY C OXT sing N N 241 GLY OXT HXT sing N N 242 HIS N CA sing N N 243 HIS N H sing N N 244 HIS N H2 sing N N 245 HIS CA C sing N N 246 HIS CA CB sing N N 247 HIS CA HA sing N N 248 HIS C O doub N N 249 HIS C OXT sing N N 250 HIS CB CG sing N N 251 HIS CB HB2 sing N N 252 HIS CB HB3 sing N N 253 HIS CG ND1 sing Y N 254 HIS CG CD2 doub Y N 255 HIS ND1 CE1 doub Y N 256 HIS ND1 HD1 sing N N 257 HIS CD2 NE2 sing Y N 258 HIS CD2 HD2 sing N N 259 HIS CE1 NE2 sing Y N 260 HIS CE1 HE1 sing N N 261 HIS NE2 HE2 sing N N 262 HIS OXT HXT sing N N 263 ILE N CA sing N N 264 ILE N H sing N N 265 ILE N H2 sing N N 266 ILE CA C sing N N 267 ILE CA CB sing N N 268 ILE CA HA sing N N 269 ILE C O doub N N 270 ILE C OXT sing N N 271 ILE CB CG1 sing N N 272 ILE CB CG2 sing N N 273 ILE CB HB sing N N 274 ILE CG1 CD1 sing N N 275 ILE CG1 HG12 sing N N 276 ILE CG1 HG13 sing N N 277 ILE CG2 HG21 sing N N 278 ILE CG2 HG22 sing N N 279 ILE CG2 HG23 sing N N 280 ILE CD1 HD11 sing N N 281 ILE CD1 HD12 sing N N 282 ILE CD1 HD13 sing N N 283 ILE OXT HXT sing N N 284 LEU N CA sing N N 285 LEU N H sing N N 286 LEU N H2 sing N N 287 LEU CA C sing N N 288 LEU CA CB sing N N 289 LEU CA HA sing N N 290 LEU C O doub N N 291 LEU C OXT sing N N 292 LEU CB CG sing N N 293 LEU CB HB2 sing N N 294 LEU CB HB3 sing N N 295 LEU CG CD1 sing N N 296 LEU CG CD2 sing N N 297 LEU CG HG sing N N 298 LEU CD1 HD11 sing N N 299 LEU CD1 HD12 sing N N 300 LEU CD1 HD13 sing N N 301 LEU CD2 HD21 sing N N 302 LEU CD2 HD22 sing N N 303 LEU CD2 HD23 sing N N 304 LEU OXT HXT sing N N 305 LYS N CA sing N N 306 LYS N H sing N N 307 LYS N H2 sing N N 308 LYS CA C sing N N 309 LYS CA CB sing N N 310 LYS CA HA sing N N 311 LYS C O doub N N 312 LYS C OXT sing N N 313 LYS CB CG sing N N 314 LYS CB HB2 sing N N 315 LYS CB HB3 sing N N 316 LYS CG CD sing N N 317 LYS CG HG2 sing N N 318 LYS CG HG3 sing N N 319 LYS CD CE sing N N 320 LYS CD HD2 sing N N 321 LYS CD HD3 sing N N 322 LYS CE NZ sing N N 323 LYS CE HE2 sing N N 324 LYS CE HE3 sing N N 325 LYS NZ HZ1 sing N N 326 LYS NZ HZ2 sing N N 327 LYS NZ HZ3 sing N N 328 LYS OXT HXT sing N N 329 MET N CA sing N N 330 MET N H sing N N 331 MET N H2 sing N N 332 MET CA C sing N N 333 MET CA CB sing N N 334 MET CA HA sing N N 335 MET C O doub N N 336 MET C OXT sing N N 337 MET CB CG sing N N 338 MET CB HB2 sing N N 339 MET CB HB3 sing N N 340 MET CG SD sing N N 341 MET CG HG2 sing N N 342 MET CG HG3 sing N N 343 MET SD CE sing N N 344 MET CE HE1 sing N N 345 MET CE HE2 sing N N 346 MET CE HE3 sing N N 347 MET OXT HXT sing N N 348 PHE N CA sing N N 349 PHE N H sing N N 350 PHE N H2 sing N N 351 PHE CA C sing N N 352 PHE CA CB sing N N 353 PHE CA HA sing N N 354 PHE C O doub N N 355 PHE C OXT sing N N 356 PHE CB CG sing N N 357 PHE CB HB2 sing N N 358 PHE CB HB3 sing N N 359 PHE CG CD1 doub Y N 360 PHE CG CD2 sing Y N 361 PHE CD1 CE1 sing Y N 362 PHE CD1 HD1 sing N N 363 PHE CD2 CE2 doub Y N 364 PHE CD2 HD2 sing N N 365 PHE CE1 CZ doub Y N 366 PHE CE1 HE1 sing N N 367 PHE CE2 CZ sing Y N 368 PHE CE2 HE2 sing N N 369 PHE CZ HZ sing N N 370 PHE OXT HXT sing N N 371 PRO N CA sing N N 372 PRO N CD sing N N 373 PRO N H sing N N 374 PRO CA C sing N N 375 PRO CA CB sing N N 376 PRO CA HA sing N N 377 PRO C O doub N N 378 PRO C OXT sing N N 379 PRO CB CG sing N N 380 PRO CB HB2 sing N N 381 PRO CB HB3 sing N N 382 PRO CG CD sing N N 383 PRO CG HG2 sing N N 384 PRO CG HG3 sing N N 385 PRO CD HD2 sing N N 386 PRO CD HD3 sing N N 387 PRO OXT HXT sing N N 388 SER N CA sing N N 389 SER N H sing N N 390 SER N H2 sing N N 391 SER CA C sing N N 392 SER CA CB sing N N 393 SER CA HA sing N N 394 SER C O doub N N 395 SER C OXT sing N N 396 SER CB OG sing N N 397 SER CB HB2 sing N N 398 SER CB HB3 sing N N 399 SER OG HG sing N N 400 SER OXT HXT sing N N 401 THR N CA sing N N 402 THR N H sing N N 403 THR N H2 sing N N 404 THR CA C sing N N 405 THR CA CB sing N N 406 THR CA HA sing N N 407 THR C O doub N N 408 THR C OXT sing N N 409 THR CB OG1 sing N N 410 THR CB CG2 sing N N 411 THR CB HB sing N N 412 THR OG1 HG1 sing N N 413 THR CG2 HG21 sing N N 414 THR CG2 HG22 sing N N 415 THR CG2 HG23 sing N N 416 THR OXT HXT sing N N 417 TRP N CA sing N N 418 TRP N H sing N N 419 TRP N H2 sing N N 420 TRP CA C sing N N 421 TRP CA CB sing N N 422 TRP CA HA sing N N 423 TRP C O doub N N 424 TRP C OXT sing N N 425 TRP CB CG sing N N 426 TRP CB HB2 sing N N 427 TRP CB HB3 sing N N 428 TRP CG CD1 doub Y N 429 TRP CG CD2 sing Y N 430 TRP CD1 NE1 sing Y N 431 TRP CD1 HD1 sing N N 432 TRP CD2 CE2 doub Y N 433 TRP CD2 CE3 sing Y N 434 TRP NE1 CE2 sing Y N 435 TRP NE1 HE1 sing N N 436 TRP CE2 CZ2 sing Y N 437 TRP CE3 CZ3 doub Y N 438 TRP CE3 HE3 sing N N 439 TRP CZ2 CH2 doub Y N 440 TRP CZ2 HZ2 sing N N 441 TRP CZ3 CH2 sing Y N 442 TRP CZ3 HZ3 sing N N 443 TRP CH2 HH2 sing N N 444 TRP OXT HXT sing N N 445 TYR N CA sing N N 446 TYR N H sing N N 447 TYR N H2 sing N N 448 TYR CA C sing N N 449 TYR CA CB sing N N 450 TYR CA HA sing N N 451 TYR C O doub N N 452 TYR C OXT sing N N 453 TYR CB CG sing N N 454 TYR CB HB2 sing N N 455 TYR CB HB3 sing N N 456 TYR CG CD1 doub Y N 457 TYR CG CD2 sing Y N 458 TYR CD1 CE1 sing Y N 459 TYR CD1 HD1 sing N N 460 TYR CD2 CE2 doub Y N 461 TYR CD2 HD2 sing N N 462 TYR CE1 CZ doub Y N 463 TYR CE1 HE1 sing N N 464 TYR CE2 CZ sing Y N 465 TYR CE2 HE2 sing N N 466 TYR CZ OH sing N N 467 TYR OH HH sing N N 468 TYR OXT HXT sing N N 469 VAL N CA sing N N 470 VAL N H sing N N 471 VAL N H2 sing N N 472 VAL CA C sing N N 473 VAL CA CB sing N N 474 VAL CA HA sing N N 475 VAL C O doub N N 476 VAL C OXT sing N N 477 VAL CB CG1 sing N N 478 VAL CB CG2 sing N N 479 VAL CB HB sing N N 480 VAL CG1 HG11 sing N N 481 VAL CG1 HG12 sing N N 482 VAL CG1 HG13 sing N N 483 VAL CG2 HG21 sing N N 484 VAL CG2 HG22 sing N N 485 VAL CG2 HG23 sing N N 486 VAL OXT HXT sing N N 487 # _em_buffer_component.buffer_id 1 _em_buffer_component.concentration 1 _em_buffer_component.concentration_units x _em_buffer_component.formula ? _em_buffer_component.id 1 _em_buffer_component.name 'Phosphate-buffered saline' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 185880 _em_entity_assembly_naturalsource.organism 'unclassified Densovirinae' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 75 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 1411 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate 'VOLTA PHASE PLATE' _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 188074 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cisTEM 1.0.0 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF Chimera' 1.13.1 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? cisTEM 1.0.0 CLASSIFICATION ? 11 1 ? ? cisTEM 1.0.0 RECONSTRUCTION ? 12 1 ? ? cisTEM 1.0.0 'VOLUME SELECTION' ? 13 1 1 1 ? ? 'SERIES ALIGNMENT' ? 14 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 15 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 16 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 17 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 18 1 1 1 ? ? 'MODEL REFINEMENT' ? 19 ? 1 ? Coot 0.8.9.3 'MODEL REFINEMENT' ? 20 ? 1 ? PHENIX 1.20.1 # _em_specimen.concentration 2 _em_specimen.details 'Deceased common house crickets, previously showing signs of paralysis, inability to jump, and inability to control movement' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 6997 _em_virus_natural_host.organism 'Acheta domesticus' _em_virus_natural_host.strain ? # _em_virus_shell.diameter 210 _em_virus_shell.entity_assembly_id 1 _em_virus_shell.id 1 _em_virus_shell.name 'Acheta domesticus segmented densovirus capsid' _em_virus_shell.triangulation 1 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM082946 1 'National Institutes of Health/Office of the Director' 'United States' OD018142 2 'National Institutes of Health/National Center for Research Resources (NIH/NCRR)' 'United States' RR025080 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3UX1 # _atom_sites.entry_id 8ER8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P S # loop_