HEADER VIRUS 12-OCT-22 8ERK TITLE ACHETA DOMESTICUS SEGMENTED DENSOVIRUS, HIGH BUOYANCY (HB) CAPSID, A TITLE 2 MIXED POPULATION OF EMPTY AND IMMATURE FULL PARTICLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACHETA DOMESTICUS SEGMENTED DENSOVIRUS MAJOR CAPSID COMPND 3 PROTEIN; COMPND 4 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCLASSIFIED DENSOVIRINAE; SOURCE 3 ORGANISM_TAXID: 185880 KEYWDS PARVOVIRUS, DENSOVIRUS, VIRUS CAPSID, VIRION, INSECT VIRUS, CAPSID, KEYWDS 2 INVERTEBRATE, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR J.J.PENZES,R.MCKENNA,P.TIJSSEN REVDAT 2 21-FEB-24 8ERK 1 JRNL REMARK REVDAT 1 09-NOV-22 8ERK 0 JRNL AUTH J.J.PENZES,H.T.PHAM,P.CHIPMAN,E.W.SMITH,R.MCKENNA,P.TIJSSEN JRNL TITL BIPARTITE GENOME AND STRUCTURAL ORGANIZATION OF THE JRNL TITL 2 PARVOVIRUS ACHETA DOMESTICUS SEGMENTED DENSOVIRUS. JRNL REF NAT COMMUN V. 14 3515 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37316488 JRNL DOI 10.1038/S41467-023-38875-X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CISTEM, CISTEM, CTFFIND, UCSF CHIMERA, REMARK 3 COOT, PHENIX, CISTEM, CISTEM, CISTEM REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3UX1 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.500 REMARK 3 NUMBER OF PARTICLES : 59211 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8ERK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269204. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : UNCLASSIFIED DENSOVIRINAE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1127 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 650.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 4000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : OTHER REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 7500.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : OTHER REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 2 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 2 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 3 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 3 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 4 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 5 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 6 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 6 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 7 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 8 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 8 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 8 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 9 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 9 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 9 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 10 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 11 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 11 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 12 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 12 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 13 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 13 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 13 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 14 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 14 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 15 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 16 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 16 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 17 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 17 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 17 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 18 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 18 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 18 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 19 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 19 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 20 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 20 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 20 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 21 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 21 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 22 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 22 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 23 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 23 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 23 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 25 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 25 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 26 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 26 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 26 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 27 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 27 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 27 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 28 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 28 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 28 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 29 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 29 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 29 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 30 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 30 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 34 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 35 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 36 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 37 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 37 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 37 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 38 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 38 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 38 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 39 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 40 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 40 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 41 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 41 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 41 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 42 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 42 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 42 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 43 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 44 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 44 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 45 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 45 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 45 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 47 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 47 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 48 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 48 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 49 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 49 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 50 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 50 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 51 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 51 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 51 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 52 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 52 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 52 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 53 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 53 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 53 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 54 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 54 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 54 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 56 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 56 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 59 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 59 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 60 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 60 0.809017 0.500000 -0.309017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 154 REMARK 465 GLY A 155 REMARK 465 ALA A 156 REMARK 465 THR A 157 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 133 OD1 ASP A 228 1.52 REMARK 500 O GLN A 117 H ASN A 121 1.54 REMARK 500 O GLY A 350 HE ARG A 353 1.55 REMARK 500 HE ARG A 79 OE2 GLU A 81 1.57 REMARK 500 O GLY A 108 HD22 ASN A 114 1.60 REMARK 500 OD1 ASN A 116 OG1 THR A 118 1.89 REMARK 500 NH1 ARG A 133 OD1 ASP A 228 2.07 REMARK 500 O THR A 264 NE2 GLN A 287 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 135 -75.19 -101.01 REMARK 500 ARG A 177 -4.59 65.16 REMARK 500 THR A 185 -63.55 -103.98 REMARK 500 THR A 217 -75.10 -50.62 REMARK 500 SER A 291 -61.11 -106.56 REMARK 500 TYR A 360 -175.07 -170.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 61 ASN A 62 149.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-28553 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-28550 RELATED DB: EMDB DBREF 8ERK A 49 366 PDB 8ERK 8ERK 49 366 SEQRES 1 A 318 GLU GLY TYR GLY LYS HIS ILE THR SER MET HIS VAL ARG SEQRES 2 A 318 ASN ILE PHE ASN GLN GLY ASN GLN VAL ILE ARG ASN ILE SEQRES 3 A 318 VAL LYS GLN GLN ARG TYR GLU LEU LEU ASP PHE THR GLY SEQRES 4 A 318 THR GLU ALA GLY THR THR ASN LEU PRO LYS ILE ILE PRO SEQRES 5 A 318 TYR GLN CYS ILE TRP TRP ARG GLY LEU GLN ASN ALA ALA SEQRES 6 A 318 ASN VAL ASN GLN THR ILE ASN ASN MET ILE ALA LEU ASN SEQRES 7 A 318 THR ILE SER TYR GLY VAL ARG PHE LEU LYS ALA LYS LEU SEQRES 8 A 318 CYS ILE GLU VAL TYR ALA VAL THR ARG LYS ARG LEU ILE SEQRES 9 A 318 GLN THR GLY ALA THR SER TYR TYR THR ASP ASP PHE GLU SEQRES 10 A 318 GLN GLY GLN ASN LEU PHE ILE GLY TRP ALA ASP ARG LYS SEQRES 11 A 318 ALA GLU SER ILE PRO ILE THR THR PRO ALA ASP LEU ASP SEQRES 12 A 318 GLU THR LYS LEU THR VAL ALA ASN THR THR LEU PHE ASP SEQRES 13 A 318 ALA ASN ASN ASP ASN ILE THR LYS GLU GLU VAL PRO THR SEQRES 14 A 318 ARG GLU LYS TRP CYS HIS THR TRP ASP LEU ASP VAL LEU SEQRES 15 A 318 ASN HIS ASN TYR LEU TRP GLU PRO ASN ASN LEU ASP SER SEQRES 16 A 318 GLN TRP THR LEU ILE PRO GLY ALA GLN ALA VAL GLN PRO SEQRES 17 A 318 THR ALA THR PRO ILE GLY PRO THR TYR GLN GLU ILE VAL SEQRES 18 A 318 ILE ALA THR LYS ALA ILE GLY ALA ASN GLU SER ALA LEU SEQRES 19 A 318 VAL THR THR ILE GLN ASP ARG ARG SER TYR PRO ARG LEU SEQRES 20 A 318 MET LEU SER GLN PRO GLN ILE LYS ASP GLU THR ASP THR SEQRES 21 A 318 MET LYS PHE LYS TYR GLN ILE ARG ILE SER THR GLU LEU SEQRES 22 A 318 GLU MET GLU HIS HIS ILE LYS PRO ASP ILE ALA ASN PRO SEQRES 23 A 318 TRP LEU THR ARG GLN THR LEU PRO LEU PRO ALA LEU SER SEQRES 24 A 318 GLY ASP GLY THR THR ARG TYR VAL PRO CYS VAL PRO TYR SEQRES 25 A 318 GLU THR HIS VAL SER GLN HELIX 1 AA1 CYS A 103 GLY A 108 5 6 HELIX 2 AA2 ASN A 111 VAL A 115 5 5 HELIX 3 AA3 ASN A 116 ILE A 128 1 13 HELIX 4 AA4 THR A 186 ASP A 191 5 6 HELIX 5 AA5 GLY A 262 GLN A 266 5 5 HELIX 6 AA6 ASN A 333 ARG A 338 5 6 SHEET 1 AA1 4 VAL A 70 ASP A 84 0 SHEET 2 AA1 4 PHE A 311 ILE A 327 -1 O HIS A 325 N ILE A 71 SHEET 3 AA1 4 SER A 129 ILE A 152 -1 N GLU A 142 O ARG A 316 SHEET 4 AA1 4 TYR A 159 PHE A 164 -1 O THR A 161 N ARG A 150 SHEET 1 AA2 4 VAL A 70 ASP A 84 0 SHEET 2 AA2 4 PHE A 311 ILE A 327 -1 O HIS A 325 N ILE A 71 SHEET 3 AA2 4 SER A 129 ILE A 152 -1 N GLU A 142 O ARG A 316 SHEET 4 AA2 4 LYS A 220 ASP A 226 -1 O TRP A 221 N ILE A 141 SHEET 1 AA3 4 LYS A 97 ILE A 99 0 SHEET 2 AA3 4 LEU A 295 SER A 298 -1 O LEU A 295 N ILE A 99 SHEET 3 AA3 4 LEU A 170 GLY A 173 -1 N PHE A 171 O SER A 298 SHEET 4 AA3 4 LYS A 212 VAL A 215 -1 O GLU A 213 N ILE A 172 SHEET 1 AA4 2 ILE A 182 ILE A 184 0 SHEET 2 AA4 2 ARG A 353 VAL A 355 -1 O VAL A 355 N ILE A 182 SHEET 1 AA5 2 LEU A 235 TRP A 236 0 SHEET 2 AA5 2 THR A 340 LEU A 341 1 O LEU A 341 N LEU A 235 SHEET 1 AA6 2 ALA A 271 LYS A 273 0 SHEET 2 AA6 2 ALA A 281 VAL A 283 -1 O VAL A 283 N ALA A 271 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000