HEADER    ENDOCYTOSIS                             13-OCT-22   8ESE              
TITLE     CRYSTAL STRUCTURE OF HUMAN VPS29 BOUND TO A PEPTIDE FROM VPS35L       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: VPS35 ENDOSOMAL PROTEIN-SORTING FACTOR-LIKE;               
COMPND   3 CHAIN: X;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MOL_ID: 2;                                                           
COMPND   6 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 29;            
COMPND   7 CHAIN: Z;                                                            
COMPND   8 SYNONYM: HVPS29,PEP11 HOMOLOG,VESICLE PROTEIN SORTING 29;            
COMPND   9 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 MOL_ID: 2;                                                           
SOURCE   8 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   9 ORGANISM_COMMON: HUMAN;                                              
SOURCE  10 ORGANISM_TAXID: 9606;                                                
SOURCE  11 GENE: VPS29, DC15, DC7, MDS007;                                      
SOURCE  12 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  13 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    COMMANDER, RETRIEVER, VPS29, VPS35L, ENDOCYTOSIS                      
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    M.D.HEALY,B.M.COLLINS                                                 
REVDAT   2   25-OCT-23 8ESE    1       REMARK                                   
REVDAT   1   24-MAY-23 8ESE    0                                                
JRNL        AUTH   M.D.HEALY,K.E.MCNALLY,R.BUTKOVIC,M.CHILTON,K.KATO,J.SACHARZ, 
JRNL        AUTH 2 C.MCCONVILLE,E.R.R.MOODY,S.SHAW,V.J.PLANELLES-HERRERO,       
JRNL        AUTH 3 S.K.N.YADAV,J.ROSS,U.BORUCU,C.S.PALMER,K.E.CHEN,T.I.CROLL,   
JRNL        AUTH 4 R.J.HALL,N.J.CARUANA,R.GHAI,T.H.D.NGUYEN,K.J.HEESOM,         
JRNL        AUTH 5 S.SAITOH,I.BERGER,C.SCHAFFITZEL,T.A.WILLIAMS,D.A.STROUD,     
JRNL        AUTH 6 E.DERIVERY,B.M.COLLINS,P.J.CULLEN                            
JRNL        TITL   STRUCTURE OF THE ENDOSOMAL COMMANDER COMPLEX LINKED TO       
JRNL        TITL 2 RITSCHER-SCHINZEL SYNDROME.                                  
JRNL        REF    CELL                          V. 186  2219 2023              
JRNL        REFN                   ISSN 1097-4172                               
JRNL        PMID   37172566                                                     
JRNL        DOI    10.1016/J.CELL.2023.04.003                                   
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.35 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.20RC3_4406                                  
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2           
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 45.95                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.330                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 97.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 43784                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.217                           
REMARK   3   R VALUE            (WORKING SET) : 0.215                           
REMARK   3   FREE R VALUE                     : 0.241                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.570                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1999                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 45.9500 -  3.2500    0.99     3235   154  0.1770 0.2081        
REMARK   3     2  3.2500 -  2.5800    1.00     3107   148  0.1898 0.1910        
REMARK   3     3  2.5800 -  2.2600    0.99     3066   147  0.1914 0.2016        
REMARK   3     4  2.2600 -  2.0500    0.96     2922   141  0.2320 0.2868        
REMARK   3     5  2.0500 -  1.9000    0.89     2713   132  0.2587 0.2930        
REMARK   3     6  1.9000 -  1.7900    0.97     2945   140  0.2301 0.2808        
REMARK   3     7  1.7900 -  1.7000    1.00     3029   145  0.2340 0.2899        
REMARK   3     8  1.7000 -  1.6300    1.00     3011   144  0.2360 0.2705        
REMARK   3     9  1.6300 -  1.5600    1.00     3027   144  0.2388 0.2507        
REMARK   3    10  1.5600 -  1.5100    1.00     3017   145  0.2582 0.2703        
REMARK   3    11  1.5100 -  1.4600    0.98     2958   141  0.3627 0.3595        
REMARK   3    12  1.4600 -  1.4200    1.00     3007   144  0.3627 0.3460        
REMARK   3    13  1.4200 -  1.3800    1.00     2998   143  0.3564 0.4011        
REMARK   3    14  1.3800 -  1.3500    0.91     2750   131  0.4083 0.3859        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.232            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.422           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 18.43                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 26.67                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.023           1616                                  
REMARK   3   ANGLE     :  1.945           2194                                  
REMARK   3   CHIRALITY :  0.137            248                                  
REMARK   3   PLANARITY :  0.014            279                                  
REMARK   3   DIHEDRAL  :  7.006            209                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 8ESE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-22.                  
REMARK 100 THE DEPOSITION ID IS D_1000269336.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 13-OCT-22                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : AUSTRALIAN SYNCHROTRON             
REMARK 200  BEAMLINE                       : MX2                                
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.95365                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS EIGER2 X 16M               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : AIMLESS                            
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 44459                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.350                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 45.950                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.1                               
REMARK 200  DATA REDUNDANCY                : 6.200                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 11.3000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.37                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHENIX                                                
REMARK 200 STARTING MODEL: 6XSA                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 42.46                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5 AND 25% (W/V)      
REMARK 280  PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K            
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       21.85950            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       41.32200            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       27.64250            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       41.32200            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       21.85950            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       27.64250            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 9390 ANGSTROM**2                        
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Z                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLU X    16                                                      
REMARK 465     PHE X    17                                                      
REMARK 465     ALA X    18                                                      
REMARK 465     SER X    19                                                      
REMARK 465     CYS X    20                                                      
REMARK 465     ARG X    21                                                      
REMARK 465     LEU X    22                                                      
REMARK 465     GLU X    23                                                      
REMARK 465     GLY Z    -1                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   HZ3  LYS Z    24     O    HOH Z   201              1.32            
REMARK 500   O    HOH Z   286     H2   HOH Z   300              1.40            
REMARK 500   H1   HOH Z   325     O    HOH Z   368              1.46            
REMARK 500   H2   HOH Z   223     O    HOH Z   336              1.51            
REMARK 500   H2   HOH Z   253     O    HOH Z   359              1.53            
REMARK 500   H2   HOH Z   204     O    HOH Z   357              1.57            
REMARK 500   HZ2  LYS Z    30     O    HOH Z   205              1.58            
REMARK 500   NZ   LYS Z    24     O    HOH Z   201              1.84            
REMARK 500   O    HOH Z   323     O    HOH Z   333              1.85            
REMARK 500   O    HOH Z   241     O    HOH Z   341              1.86            
REMARK 500   O    LEU Z    40     O    HOH Z   202              1.89            
REMARK 500   SD   MET Z     1     O    HOH Z   247              1.91            
REMARK 500   N    ALA X    24     O    HOH X   101              1.93            
REMARK 500   O    HOH Z   329     O    HOH Z   337              1.99            
REMARK 500   O    HOH Z   230     O    HOH Z   312              2.02            
REMARK 500   O    HOH Z   204     O    HOH Z   357              2.02            
REMARK 500   O    HOH Z   236     O    HOH Z   324              2.07            
REMARK 500   OG   SER Z    98     O    HOH Z   203              2.08            
REMARK 500   O    HOH Z   286     O    HOH Z   300              2.10            
REMARK 500   O    HOH Z   253     O    HOH Z   359              2.14            
REMARK 500   N    HIS Z     0     O    HOH Z   204              2.14            
REMARK 500   O    HOH Z   201     O    HOH Z   206              2.17            
REMARK 500   O    HOH Z   223     O    HOH Z   336              2.18            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   O    HOH Z   275     H2   HOH Z   331     3545     1.45            
REMARK 500   O    HOH Z   272     O    HOH Z   316     4555     2.00            
REMARK 500   O    HOH Z   275     O    HOH Z   331     3545     2.05            
REMARK 500   O    HOH Z   305     O    HOH Z   365     3555     2.07            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    MET Z   1   CG  -  SD  -  CE  ANGL. DEV. =  10.1 DEGREES          
REMARK 500    CYS Z  41   CB  -  CA  -  C   ANGL. DEV. =   9.2 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    CYS Z  41      -51.55     75.53                                   
REMARK 500    HIS Z 115      -39.74     72.44                                   
REMARK 500    ALA Z 157     -117.32     53.37                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH Z 379        DISTANCE =  6.73 ANGSTROMS                       
REMARK 525    HOH Z 380        DISTANCE =  7.13 ANGSTROMS                       
DBREF  8ESE X   16    38  UNP    B3KT69   B3KT69_HUMAN    16     38             
DBREF  8ESE Z    1   182  UNP    Q9UBQ0   VPS29_HUMAN      1    182             
SEQADV 8ESE GLY Z   -1  UNP  Q9UBQ0              EXPRESSION TAG                 
SEQADV 8ESE HIS Z    0  UNP  Q9UBQ0              EXPRESSION TAG                 
SEQRES   1 X   23  GLU PHE ALA SER CYS ARG LEU GLU ALA VAL PRO LEU GLU          
SEQRES   2 X   23  PHE GLY ASP TYR HIS PRO LEU LYS PRO ILE                      
SEQRES   1 Z  184  GLY HIS MET LEU VAL LEU VAL LEU GLY ASP LEU HIS ILE          
SEQRES   2 Z  184  PRO HIS ARG CYS ASN SER LEU PRO ALA LYS PHE LYS LYS          
SEQRES   3 Z  184  LEU LEU VAL PRO GLY LYS ILE GLN HIS ILE LEU CYS THR          
SEQRES   4 Z  184  GLY ASN LEU CYS THR LYS GLU SER TYR ASP TYR LEU LYS          
SEQRES   5 Z  184  THR LEU ALA GLY ASP VAL HIS ILE VAL ARG GLY ASP PHE          
SEQRES   6 Z  184  ASP GLU ASN LEU ASN TYR PRO GLU GLN LYS VAL VAL THR          
SEQRES   7 Z  184  VAL GLY GLN PHE LYS ILE GLY LEU ILE HIS GLY HIS GLN          
SEQRES   8 Z  184  VAL ILE PRO TRP GLY ASP MET ALA SER LEU ALA LEU LEU          
SEQRES   9 Z  184  GLN ARG GLN PHE ASP VAL ASP ILE LEU ILE SER GLY HIS          
SEQRES  10 Z  184  THR HIS LYS PHE GLU ALA PHE GLU HIS GLU ASN LYS PHE          
SEQRES  11 Z  184  TYR ILE ASN PRO GLY SER ALA THR GLY ALA TYR ASN ALA          
SEQRES  12 Z  184  LEU GLU THR ASN ILE ILE PRO SER PHE VAL LEU MET ASP          
SEQRES  13 Z  184  ILE GLN ALA SER THR VAL VAL THR TYR VAL TYR GLN LEU          
SEQRES  14 Z  184  ILE GLY ASP ASP VAL LYS VAL GLU ARG ILE GLU TYR LYS          
SEQRES  15 Z  184  LYS PRO                                                      
FORMUL   3  HOH   *191(H2 O)                                                    
HELIX    1 AA1 PRO Z   19  LEU Z   26  1                                   8    
HELIX    2 AA2 THR Z   42  ALA Z   53  1                                  12    
HELIX    3 AA3 ASP Z   95  ASP Z  107  1                                  13    
SHEET    1 AA1 7 VAL X  25  PRO X  26  0                                        
SHEET    2 AA1 7 ASP Z 171  LYS Z 180 -1  O  ARG Z 176   N  VAL X  25           
SHEET    3 AA1 7 THR Z 159  ILE Z 168 -1  N  THR Z 162   O  ILE Z 177           
SHEET    4 AA1 7 SER Z 149  GLN Z 156 -1  N  LEU Z 152   O  TYR Z 163           
SHEET    5 AA1 7 MET Z   1  LEU Z   6 -1  N  MET Z   1   O  ILE Z 155           
SHEET    6 AA1 7 HIS Z  33  CYS Z  36  1  O  LEU Z  35   N  LEU Z   4           
SHEET    7 AA1 7 ASP Z  55  ILE Z  58  1  O  HIS Z  57   N  CYS Z  36           
SHEET    1 AA2 5 GLN Z  72  VAL Z  77  0                                        
SHEET    2 AA2 5 PHE Z  80  ILE Z  85 -1  O  ILE Z  82   N  VAL Z  75           
SHEET    3 AA2 5 ILE Z 110  SER Z 113  1  O  ILE Z 112   N  GLY Z  83           
SHEET    4 AA2 5 LYS Z 127  ASN Z 131  1  O  ILE Z 130   N  LEU Z 111           
SHEET    5 AA2 5 GLU Z 120  HIS Z 124 -1  N  GLU Z 120   O  ASN Z 131           
CISPEP   1 ILE Z   11    PRO Z   12          0         3.45                     
CISPEP   2 ILE Z   91    PRO Z   92          0       -13.94                     
CRYST1   43.719   55.285   82.644  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.022873  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.018088  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.012100        0.00000