HEADER LIGASE/PRODUCT 21-OCT-22 8EVW TITLE DDLA FROM PSEUDOMONAS AERUGINOSA PAO1 IN COMPLEX WITH ATP AND D-ALA-D- TITLE 2 ALA COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--D-ALANINE LIGASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-ALA-D-ALA LIGASE A,D-ALANYLALANINE SYNTHETASE A; COMPND 5 EC: 6.3.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 5 / 1C / PRS 101 / PAO1; SOURCE 6 GENE: DDLA, PA4201; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ATP-GRASP, LIGASE, LIGASE-PRODUCT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.PEDERICK,J.C.WOOLMAN,J.B.BRUNING REVDAT 3 20-DEC-23 8EVW 1 JRNL REVDAT 2 06-SEP-23 8EVW 1 JRNL REVDAT 1 30-AUG-23 8EVW 0 JRNL AUTH J.L.PEDERICK,J.C.WOOLMAN,J.B.BRUNING JRNL TITL COMPARATIVE FUNCTIONAL AND STRUCTURAL ANALYSIS OF JRNL TITL 2 PSEUDOMONAS AERUGINOSA D-ALANINE-D-ALANINE LIGASE ISOFORMS JRNL TITL 3 AS PROSPECTIVE ANTIBIOTIC TARGETS. JRNL REF FEBS J. V. 290 5536 2023 JRNL REFN ISSN 1742-464X JRNL PMID 37581574 JRNL DOI 10.1111/FEBS.16932 REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2-3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 169494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 8680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1600 - 3.7900 1.00 5493 313 0.1525 0.1607 REMARK 3 2 3.7900 - 3.0100 1.00 5473 283 0.1458 0.1656 REMARK 3 3 3.0100 - 2.6300 0.95 5137 297 0.1617 0.1824 REMARK 3 4 2.6300 - 2.3900 0.99 5449 272 0.1648 0.1897 REMARK 3 5 2.3900 - 2.2200 0.99 5414 299 0.1588 0.1834 REMARK 3 6 2.2200 - 2.0900 0.99 5401 295 0.1560 0.1750 REMARK 3 7 2.0900 - 1.9800 0.99 5372 271 0.1574 0.1821 REMARK 3 8 1.9800 - 1.9000 0.99 5374 312 0.1590 0.1820 REMARK 3 9 1.9000 - 1.8200 0.99 5410 289 0.1623 0.1827 REMARK 3 10 1.8200 - 1.7600 0.99 5425 275 0.1592 0.1701 REMARK 3 11 1.7600 - 1.7000 0.99 5429 260 0.1609 0.1833 REMARK 3 12 1.7000 - 1.6600 0.99 5383 322 0.1621 0.1927 REMARK 3 13 1.6600 - 1.6100 0.99 5367 299 0.1551 0.1666 REMARK 3 14 1.6100 - 1.5700 0.96 5207 257 0.1539 0.1744 REMARK 3 15 1.5700 - 1.5400 0.98 5313 311 0.1556 0.1753 REMARK 3 16 1.5400 - 1.5000 0.99 5359 295 0.1610 0.1935 REMARK 3 17 1.5000 - 1.4700 0.99 5368 269 0.1601 0.1622 REMARK 3 18 1.4700 - 1.4500 0.99 5395 285 0.1621 0.1743 REMARK 3 19 1.4500 - 1.4200 0.99 5393 290 0.1709 0.1904 REMARK 3 20 1.4200 - 1.4000 0.99 5323 314 0.1732 0.2196 REMARK 3 21 1.4000 - 1.3700 0.99 5437 254 0.1711 0.2111 REMARK 3 22 1.3700 - 1.3500 0.99 5337 289 0.1752 0.2111 REMARK 3 23 1.3500 - 1.3300 0.99 5380 279 0.1769 0.2043 REMARK 3 24 1.3300 - 1.3100 0.99 5359 294 0.1813 0.2157 REMARK 3 25 1.3100 - 1.3000 0.98 5328 285 0.1825 0.2012 REMARK 3 26 1.3000 - 1.2800 0.99 5302 296 0.1821 0.2104 REMARK 3 27 1.2800 - 1.2600 0.98 5363 300 0.1840 0.2001 REMARK 3 28 1.2600 - 1.2500 0.99 5250 295 0.1900 0.2130 REMARK 3 29 1.2500 - 1.2300 0.97 5367 286 0.2022 0.2221 REMARK 3 30 1.2300 - 1.2200 0.97 5206 294 0.2095 0.2355 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EVW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 169550 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 39.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.37700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 8EVV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M CITRIC ACID PH 5.0, 16% PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.80750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 4 REMARK 465 SER A 78 REMARK 465 GLY A 79 REMARK 465 LYS A 80 REMARK 465 GLN A 81 REMARK 465 SER A 82 REMARK 465 LEU A 83 REMARK 465 LEU A 84 REMARK 465 SER A 85 REMARK 465 ALA A 86 REMARK 465 GLY A 87 REMARK 465 GLU A 88 REMARK 465 LEU A 89 REMARK 465 ALA A 90 REMARK 465 LYS A 339 REMARK 465 GLY A 340 REMARK 465 ALA A 341 REMARK 465 ARG A 342 REMARK 465 LYS A 343 REMARK 465 ALA A 344 REMARK 465 ARG A 345 REMARK 465 SER A 346 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 3 REMARK 465 ASP B 4 REMARK 465 ILE B 76 REMARK 465 ARG B 77 REMARK 465 SER B 78 REMARK 465 GLY B 79 REMARK 465 LYS B 80 REMARK 465 GLN B 81 REMARK 465 SER B 82 REMARK 465 LEU B 83 REMARK 465 LYS B 339 REMARK 465 GLY B 340 REMARK 465 ALA B 341 REMARK 465 ARG B 342 REMARK 465 LYS B 343 REMARK 465 ALA B 344 REMARK 465 ARG B 345 REMARK 465 SER B 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 GLN A 188 CG CD OE1 NE2 REMARK 470 ASP A 203 CG OD1 OD2 REMARK 470 ARG A 251 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 ARG B 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 GLU B 65 CG CD OE1 OE2 REMARK 470 ASP B 71 CG OD1 OD2 REMARK 470 ILE B 75 CG1 CG2 CD1 REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 GLU B 158 CG CD OE1 OE2 REMARK 470 ASP B 203 CG OD1 OD2 REMARK 470 ASP B 223 CG OD1 OD2 REMARK 470 GLN B 224 CG CD OE1 NE2 REMARK 470 GLU B 336 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 112 CA - CB - CG ANGL. DEV. = 28.9 DEGREES REMARK 500 LEU A 112 CB - CG - CD1 ANGL. DEV. = -17.7 DEGREES REMARK 500 LEU A 112 CB - CG - CD2 ANGL. DEV. = 39.9 DEGREES REMARK 500 ARG A 288 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 MET B 132 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG B 200 CG - CD - NE ANGL. DEV. = -12.9 DEGREES REMARK 500 CYS B 338 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 47 -39.62 -151.31 REMARK 500 SER A 70 -134.61 49.75 REMARK 500 SER A 175 42.67 -140.55 REMARK 500 SER B 47 -58.20 -144.25 REMARK 500 SER B 85 -11.33 71.86 REMARK 500 SER B 175 46.42 -142.46 REMARK 500 ASP B 222 68.20 32.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1163 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1164 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1165 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1166 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A1167 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1168 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A1169 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A1170 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A1171 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B1160 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B1161 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B1162 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B1163 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B1164 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B1165 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B1166 DISTANCE = 6.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 286 OD2 REMARK 620 2 GLU A 299 OE2 94.5 REMARK 620 3 ATP A 601 O3G 96.2 86.7 REMARK 620 4 ATP A 601 O3B 157.4 81.5 61.5 REMARK 620 5 ATP A 601 O1A 122.2 92.7 141.4 80.3 REMARK 620 6 HOH A 771 O 96.4 167.0 85.1 85.7 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 299 OE1 REMARK 620 2 GLU A 299 OE2 54.8 REMARK 620 3 ASN A 301 OD1 96.0 91.8 REMARK 620 4 ATP A 601 O1G 149.1 95.8 94.1 REMARK 620 5 ATP A 601 O2B 83.2 84.0 175.4 84.5 REMARK 620 6 HOH A 791 O 108.8 163.4 92.4 99.9 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 286 OD2 REMARK 620 2 GLU B 299 OE2 93.2 REMARK 620 3 ATP B 601 O3G 95.6 89.3 REMARK 620 4 ATP B 601 O3B 156.9 83.1 61.7 REMARK 620 5 ATP B 601 O1A 122.0 92.0 142.2 81.0 REMARK 620 6 HOH B 807 O 96.4 168.5 83.6 85.6 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 299 OE1 REMARK 620 2 GLU B 299 OE2 54.8 REMARK 620 3 ASN B 301 OD1 89.6 91.8 REMARK 620 4 ATP B 601 O1G 150.9 96.6 97.3 REMARK 620 5 ATP B 601 O2B 87.3 83.5 175.2 83.6 REMARK 620 6 HOH B 814 O 108.3 162.6 92.1 99.7 92.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8EVV RELATED DB: PDB REMARK 900 STRUCTURE OF THE APO FORM OF THE SAME PROTEIN DBREF 8EVW A 1 346 UNP Q9HWI0 DDLA_PSEAE 1 346 DBREF 8EVW B 1 346 UNP Q9HWI0 DDLA_PSEAE 1 346 SEQADV 8EVW GLY A 0 UNP Q9HWI0 EXPRESSION TAG SEQADV 8EVW GLY B 0 UNP Q9HWI0 EXPRESSION TAG SEQRES 1 A 347 GLY MET GLY GLN ASP LYS LEU LYS VAL ALA VAL LEU PHE SEQRES 2 A 347 GLY GLY SER SER GLU GLU ARG ASP VAL SER ILE ALA SER SEQRES 3 A 347 GLY ALA GLN VAL ILE GLN ALA LEU ARG SER ALA GLY HIS SEQRES 4 A 347 GLN VAL LEU ALA VAL ASP THR ALA SER GLY LEU LEU GLY SEQRES 5 A 347 ALA GLU GLU GLU ARG ARG LEU LEU ALA SER LYS VAL LYS SEQRES 6 A 347 GLU VAL PRO PRO ASP SER ASP SER LEU ALA ILE ILE ARG SEQRES 7 A 347 SER GLY LYS GLN SER LEU LEU SER ALA GLY GLU LEU ALA SEQRES 8 A 347 GLY VAL ASP VAL PHE PHE LEU ALA LEU HIS GLY GLY THR SEQRES 9 A 347 GLY GLU ASP GLY THR LEU GLN ALA LEU LEU ASP ALA GLY SEQRES 10 A 347 GLY PHE ALA TYR THR GLY SER GLY HIS LEU ALA SER ALA SEQRES 11 A 347 MET ALA MET ASP LYS ASP VAL ALA LYS ARG LEU PHE LEU SEQRES 12 A 347 ALA ALA GLY VAL GLU THR ALA SER TRP LEU MET ALA PRO SEQRES 13 A 347 ALA SER GLU GLU GLU VAL ARG GLU GLN LEU GLY PHE PRO SEQRES 14 A 347 LEU VAL VAL LYS PRO ASN SER GLN GLY SER THR VAL GLY SEQRES 15 A 347 LEU SER ILE VAL HIS SER GLN ALA GLU LEU GLN PRO ALA SEQRES 16 A 347 ILE GLU LEU ALA GLY ARG TYR GLY ASP GLU VAL MET LEU SEQRES 17 A 347 GLU ARG PHE VAL ALA GLY ARG GLU VAL THR VAL GLY VAL SEQRES 18 A 347 LEU ASP ASP GLN ALA LEU PRO VAL GLY GLU ILE LEU LEU SEQRES 19 A 347 GLY GLY GLN GLU VAL PHE ASP TYR GLU HIS LYS TYR GLN SEQRES 20 A 347 ALA GLY ALA VAL ARG GLU VAL PHE PRO ALA ASP LEU PRO SEQRES 21 A 347 PRO ALA ILE ALA ALA GLU ALA GLN ARG LEU ALA LEU LYS SEQRES 22 A 347 VAL HIS ARG ALA LEU LYS LEU SER GLY TYR SER ARG THR SEQRES 23 A 347 ASP PHE ARG LEU ASP GLU GLN GLY ARG LEU TRP CYS LEU SEQRES 24 A 347 GLU VAL ASN THR LEU PRO GLY MET THR ALA THR SER LEU SEQRES 25 A 347 LEU PRO GLN ALA ALA ALA ALA ALA GLY ILE GLY PHE ALA SEQRES 26 A 347 GLU LEU CYS GLU ARG ILE CYS ARG LEU GLY ILE GLU ARG SEQRES 27 A 347 CYS LYS GLY ALA ARG LYS ALA ARG SER SEQRES 1 B 347 GLY MET GLY GLN ASP LYS LEU LYS VAL ALA VAL LEU PHE SEQRES 2 B 347 GLY GLY SER SER GLU GLU ARG ASP VAL SER ILE ALA SER SEQRES 3 B 347 GLY ALA GLN VAL ILE GLN ALA LEU ARG SER ALA GLY HIS SEQRES 4 B 347 GLN VAL LEU ALA VAL ASP THR ALA SER GLY LEU LEU GLY SEQRES 5 B 347 ALA GLU GLU GLU ARG ARG LEU LEU ALA SER LYS VAL LYS SEQRES 6 B 347 GLU VAL PRO PRO ASP SER ASP SER LEU ALA ILE ILE ARG SEQRES 7 B 347 SER GLY LYS GLN SER LEU LEU SER ALA GLY GLU LEU ALA SEQRES 8 B 347 GLY VAL ASP VAL PHE PHE LEU ALA LEU HIS GLY GLY THR SEQRES 9 B 347 GLY GLU ASP GLY THR LEU GLN ALA LEU LEU ASP ALA GLY SEQRES 10 B 347 GLY PHE ALA TYR THR GLY SER GLY HIS LEU ALA SER ALA SEQRES 11 B 347 MET ALA MET ASP LYS ASP VAL ALA LYS ARG LEU PHE LEU SEQRES 12 B 347 ALA ALA GLY VAL GLU THR ALA SER TRP LEU MET ALA PRO SEQRES 13 B 347 ALA SER GLU GLU GLU VAL ARG GLU GLN LEU GLY PHE PRO SEQRES 14 B 347 LEU VAL VAL LYS PRO ASN SER GLN GLY SER THR VAL GLY SEQRES 15 B 347 LEU SER ILE VAL HIS SER GLN ALA GLU LEU GLN PRO ALA SEQRES 16 B 347 ILE GLU LEU ALA GLY ARG TYR GLY ASP GLU VAL MET LEU SEQRES 17 B 347 GLU ARG PHE VAL ALA GLY ARG GLU VAL THR VAL GLY VAL SEQRES 18 B 347 LEU ASP ASP GLN ALA LEU PRO VAL GLY GLU ILE LEU LEU SEQRES 19 B 347 GLY GLY GLN GLU VAL PHE ASP TYR GLU HIS LYS TYR GLN SEQRES 20 B 347 ALA GLY ALA VAL ARG GLU VAL PHE PRO ALA ASP LEU PRO SEQRES 21 B 347 PRO ALA ILE ALA ALA GLU ALA GLN ARG LEU ALA LEU LYS SEQRES 22 B 347 VAL HIS ARG ALA LEU LYS LEU SER GLY TYR SER ARG THR SEQRES 23 B 347 ASP PHE ARG LEU ASP GLU GLN GLY ARG LEU TRP CYS LEU SEQRES 24 B 347 GLU VAL ASN THR LEU PRO GLY MET THR ALA THR SER LEU SEQRES 25 B 347 LEU PRO GLN ALA ALA ALA ALA ALA GLY ILE GLY PHE ALA SEQRES 26 B 347 GLU LEU CYS GLU ARG ILE CYS ARG LEU GLY ILE GLU ARG SEQRES 27 B 347 CYS LYS GLY ALA ARG LYS ALA ARG SER HET ATP A 601 31 HET DAL A 602 5 HET DAL A 603 6 HET MG A 604 1 HET MG A 605 1 HET ATP B 601 31 HET DAL B 602 5 HET DAL B 603 6 HET MG B 604 1 HET MG B 605 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM DAL D-ALANINE HETNAM MG MAGNESIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 DAL 4(C3 H7 N O2) FORMUL 6 MG 4(MG 2+) FORMUL 13 HOH *937(H2 O) HELIX 1 AA1 GLU A 18 ALA A 36 1 19 HELIX 2 AA2 GLY A 51 ALA A 60 1 10 HELIX 3 AA3 ASP A 69 ARG A 77 1 9 HELIX 4 AA4 GLY A 101 ASP A 106 1 6 HELIX 5 AA5 GLY A 107 GLY A 116 1 10 HELIX 6 AA6 GLY A 124 ASP A 133 1 10 HELIX 7 AA7 ASP A 133 ALA A 144 1 12 HELIX 8 AA8 SER A 157 LEU A 165 1 9 HELIX 9 AA9 SER A 187 ARG A 200 1 14 HELIX 10 AB1 ASP A 240 GLN A 246 1 7 HELIX 11 AB2 PRO A 259 LEU A 277 1 19 HELIX 12 AB3 SER A 310 ALA A 319 1 10 HELIX 13 AB4 GLY A 322 CYS A 338 1 17 HELIX 14 AB5 GLU B 18 ALA B 36 1 19 HELIX 15 AB6 GLY B 51 ALA B 60 1 10 HELIX 16 AB7 ASP B 69 ILE B 75 1 7 HELIX 17 AB8 ALA B 86 ALA B 90 5 5 HELIX 18 AB9 GLY B 101 ASP B 106 1 6 HELIX 19 AC1 GLY B 107 GLY B 117 1 11 HELIX 20 AC2 GLY B 124 ASP B 133 1 10 HELIX 21 AC3 ASP B 133 ALA B 144 1 12 HELIX 22 AC4 SER B 157 LEU B 165 1 9 HELIX 23 AC5 SER B 187 ALA B 189 5 3 HELIX 24 AC6 GLU B 190 ARG B 200 1 11 HELIX 25 AC7 ASP B 240 GLN B 246 1 7 HELIX 26 AC8 PRO B 259 LEU B 277 1 19 HELIX 27 AC9 SER B 310 ALA B 319 1 10 HELIX 28 AD1 GLY B 322 CYS B 338 1 17 SHEET 1 AA1 4 GLY A 48 LEU A 49 0 SHEET 2 AA1 4 GLN A 39 ASP A 44 -1 N ASP A 44 O GLY A 48 SHEET 3 AA1 4 LYS A 7 PHE A 12 1 N VAL A 10 O LEU A 41 SHEET 4 AA1 4 VAL A 94 LEU A 97 1 O PHE A 96 N LEU A 11 SHEET 1 AA2 4 TRP A 151 MET A 153 0 SHEET 2 AA2 4 VAL A 205 ARG A 209 -1 O LEU A 207 N LEU A 152 SHEET 3 AA2 4 LEU A 169 PRO A 173 -1 N VAL A 170 O GLU A 208 SHEET 4 AA2 4 SER A 183 VAL A 185 -1 O VAL A 185 N LEU A 169 SHEET 1 AA3 4 GLN A 224 ALA A 225 0 SHEET 2 AA3 4 ARG A 214 LEU A 221 -1 N LEU A 221 O GLN A 224 SHEET 3 AA3 4 GLY A 229 LEU A 232 -1 O GLY A 229 N THR A 217 SHEET 4 AA3 4 ARG A 251 VAL A 253 -1 O VAL A 253 N GLU A 230 SHEET 1 AA4 4 GLN A 224 ALA A 225 0 SHEET 2 AA4 4 ARG A 214 LEU A 221 -1 N LEU A 221 O GLN A 224 SHEET 3 AA4 4 TYR A 282 LEU A 289 -1 O PHE A 287 N VAL A 216 SHEET 4 AA4 4 LEU A 295 ASN A 301 -1 O LEU A 298 N ASP A 286 SHEET 1 AA5 4 GLY B 48 LEU B 49 0 SHEET 2 AA5 4 GLN B 39 ASP B 44 -1 N ASP B 44 O GLY B 48 SHEET 3 AA5 4 LYS B 7 PHE B 12 1 N VAL B 10 O LEU B 41 SHEET 4 AA5 4 VAL B 94 LEU B 97 1 O PHE B 96 N LEU B 11 SHEET 1 AA6 4 TRP B 151 MET B 153 0 SHEET 2 AA6 4 VAL B 205 ARG B 209 -1 O LEU B 207 N LEU B 152 SHEET 3 AA6 4 LEU B 169 PRO B 173 -1 N VAL B 170 O GLU B 208 SHEET 4 AA6 4 SER B 183 VAL B 185 -1 O VAL B 185 N LEU B 169 SHEET 1 AA7 4 GLN B 224 ALA B 225 0 SHEET 2 AA7 4 GLY B 213 LEU B 221 -1 N LEU B 221 O GLN B 224 SHEET 3 AA7 4 GLY B 229 LEU B 232 -1 O GLY B 229 N THR B 217 SHEET 4 AA7 4 ARG B 251 VAL B 253 -1 O ARG B 251 N LEU B 232 SHEET 1 AA8 4 GLN B 224 ALA B 225 0 SHEET 2 AA8 4 GLY B 213 LEU B 221 -1 N LEU B 221 O GLN B 224 SHEET 3 AA8 4 TYR B 282 ASP B 290 -1 O THR B 285 N VAL B 218 SHEET 4 AA8 4 LEU B 295 ASN B 301 -1 O LEU B 298 N ASP B 286 LINK C DAL A 602 N DAL A 603 1555 1555 1.33 LINK C DAL B 602 N DAL B 603 1555 1555 1.34 LINK OD2 ASP A 286 MG MG A 605 1555 1555 2.03 LINK OE1 GLU A 299 MG MG A 604 1555 1555 2.32 LINK OE2 GLU A 299 MG MG A 604 1555 1555 2.38 LINK OE2 GLU A 299 MG MG A 605 1555 1555 2.15 LINK OD1 ASN A 301 MG MG A 604 1555 1555 2.19 LINK O1G ATP A 601 MG MG A 604 1555 1555 2.14 LINK O2B ATP A 601 MG MG A 604 1555 1555 2.23 LINK O3G ATP A 601 MG MG A 605 1555 1555 2.16 LINK O3B ATP A 601 MG MG A 605 1555 1555 2.56 LINK O1A ATP A 601 MG MG A 605 1555 1555 2.05 LINK MG MG A 604 O HOH A 791 1555 1555 2.22 LINK MG MG A 605 O HOH A 771 1555 1555 2.20 LINK OD2 ASP B 286 MG MG B 605 1555 1555 2.02 LINK OE1 GLU B 299 MG MG B 604 1555 1555 2.31 LINK OE2 GLU B 299 MG MG B 604 1555 1555 2.41 LINK OE2 GLU B 299 MG MG B 605 1555 1555 2.14 LINK OD1 ASN B 301 MG MG B 604 1555 1555 2.17 LINK O1G ATP B 601 MG MG B 604 1555 1555 2.16 LINK O2B ATP B 601 MG MG B 604 1555 1555 2.28 LINK O3G ATP B 601 MG MG B 605 1555 1555 2.10 LINK O3B ATP B 601 MG MG B 605 1555 1555 2.60 LINK O1A ATP B 601 MG MG B 605 1555 1555 2.02 LINK MG MG B 604 O HOH B 814 1555 1555 2.26 LINK MG MG B 605 O HOH B 807 1555 1555 2.18 CISPEP 1 ALA A 154 PRO A 155 0 -2.99 CISPEP 2 PHE A 167 PRO A 168 0 3.94 CISPEP 3 PHE A 254 PRO A 255 0 -7.46 CISPEP 4 ALA B 154 PRO B 155 0 -2.64 CISPEP 5 PHE B 167 PRO B 168 0 -6.17 CISPEP 6 PHE B 254 PRO B 255 0 -6.72 CRYST1 47.273 123.615 53.582 90.00 109.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021154 0.000000 0.007335 0.00000 SCALE2 0.000000 0.008090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019753 0.00000