HEADER LIGASE/INHIBITOR 21-OCT-22 8EVZ TITLE DDLB FROM PSEUDOMONAS AERUGINOSA PAO1 IN COMPLEX WITH ADP AND TITLE 2 PHOSPHORYLATED D-CYCLOSERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--D-ALANINE LIGASE B; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: D-ALA-D-ALA LIGASE B,D-ALANYLALANINE SYNTHETASE B; COMPND 5 EC: 6.3.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 5 / 1C / PRS 101 / PAO1; SOURCE 6 GENE: DDLB, PA4410; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ATP-GRASP, LIGASE, LIGASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.PEDERICK,J.C.WOOLMAN,J.B.BRUNING REVDAT 3 20-DEC-23 8EVZ 1 JRNL REVDAT 2 06-SEP-23 8EVZ 1 JRNL REVDAT 1 30-AUG-23 8EVZ 0 JRNL AUTH J.L.PEDERICK,J.C.WOOLMAN,J.B.BRUNING JRNL TITL COMPARATIVE FUNCTIONAL AND STRUCTURAL ANALYSIS OF JRNL TITL 2 PSEUDOMONAS AERUGINOSA D-ALANINE-D-ALANINE LIGASE ISOFORMS JRNL TITL 3 AS PROSPECTIVE ANTIBIOTIC TARGETS. JRNL REF FEBS J. V. 290 5536 2023 JRNL REFN ISSN 1742-464X JRNL PMID 37581574 JRNL DOI 10.1111/FEBS.16932 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 3044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6600 - 6.8500 1.00 2705 143 0.1684 0.1868 REMARK 3 2 6.8500 - 5.4400 0.99 2617 133 0.2003 0.2095 REMARK 3 3 5.4400 - 4.7600 1.00 2567 143 0.1577 0.1780 REMARK 3 4 4.7600 - 4.3200 1.00 2568 140 0.1556 0.1830 REMARK 3 5 4.3200 - 4.0100 1.00 2583 132 0.1585 0.1975 REMARK 3 6 4.0100 - 3.7800 1.00 2535 147 0.1863 0.2184 REMARK 3 7 3.7800 - 3.5900 1.00 2554 150 0.2024 0.2558 REMARK 3 8 3.5900 - 3.4300 1.00 2545 128 0.2024 0.2921 REMARK 3 9 3.4300 - 3.3000 1.00 2539 130 0.2144 0.2770 REMARK 3 10 3.3000 - 3.1900 1.00 2566 143 0.2260 0.2657 REMARK 3 11 3.1900 - 3.0900 1.00 2518 156 0.2344 0.2806 REMARK 3 12 3.0900 - 3.0000 1.00 2521 146 0.2532 0.3019 REMARK 3 13 3.0000 - 2.9200 1.00 2534 128 0.2623 0.3116 REMARK 3 14 2.9200 - 2.8500 1.00 2511 131 0.2458 0.2859 REMARK 3 15 2.8500 - 2.7800 1.00 2533 152 0.2368 0.3157 REMARK 3 16 2.7800 - 2.7200 1.00 2515 128 0.2381 0.3096 REMARK 3 17 2.7200 - 2.6700 1.00 2507 138 0.2528 0.3134 REMARK 3 18 2.6700 - 2.6200 1.00 2546 144 0.2723 0.3270 REMARK 3 19 2.6200 - 2.5700 1.00 2508 152 0.2764 0.3525 REMARK 3 20 2.5700 - 2.5300 1.00 2531 122 0.2752 0.3597 REMARK 3 21 2.5300 - 2.4900 1.00 2498 129 0.2957 0.3939 REMARK 3 22 2.4900 - 2.4500 1.00 2532 129 0.2981 0.3427 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7305 REMARK 3 ANGLE : 0.674 9924 REMARK 3 CHIRALITY : 0.043 1119 REMARK 3 PLANARITY : 0.005 1281 REMARK 3 DIHEDRAL : 11.446 1059 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8EVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269471. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59127 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 39.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.20200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 2.05500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 8EVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 7.8, 5% GAMMA-PGA (NA+ REMARK 280 FORM, LM), 30% PEG 500 MME, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.54200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.54200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.33200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 99.52300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.33200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 99.52300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 88.54200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.33200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 99.52300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.54200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.33200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 99.52300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -88.54200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 317 REMARK 465 ARG A 318 REMARK 465 GLY A 319 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LEU B 3 REMARK 465 ALA B 317 REMARK 465 ARG B 318 REMARK 465 GLY B 319 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 ALA C 317 REMARK 465 ARG C 318 REMARK 465 GLY C 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 ASP A 170 CG OD1 OD2 REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 LYS C 16 CG CD CE NZ REMARK 470 LYS C 28 CG CD CE NZ REMARK 470 GLU C 60 CG CD OE1 OE2 REMARK 470 GLN C 64 CG CD OE1 NE2 REMARK 470 LYS C 70 CG CD CE NZ REMARK 470 GLU C 240 CD OE1 OE2 REMARK 470 ARG C 244 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 60 -4.73 -59.43 REMARK 500 ARG A 315 34.75 -82.14 REMARK 500 ALA B 134 23.87 -140.40 REMARK 500 TYR B 219 76.97 -67.67 REMARK 500 ASN C 10 -71.35 -137.98 REMARK 500 LEU C 278 -61.32 -95.51 REMARK 500 THR C 287 -164.57 -73.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 604 DISTANCE = 6.76 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 266 OD2 REMARK 620 2 GLU A 279 OE2 83.7 REMARK 620 3 ADP A 403 O2B 170.0 102.1 REMARK 620 4 ADP A 403 O2A 87.6 93.5 83.9 REMARK 620 5 DS0 A 404 O11 95.6 94.6 92.1 171.6 REMARK 620 6 HOH A 550 O 77.5 161.1 96.9 88.3 84.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 279 OE1 REMARK 620 2 GLU A 279 OE2 57.0 REMARK 620 3 ASN A 281 OD1 86.2 85.0 REMARK 620 4 ADP A 403 O3B 75.9 81.1 161.4 REMARK 620 5 DS0 A 404 O10 153.7 96.9 95.2 98.6 REMARK 620 6 HOH A 555 O 92.2 149.1 94.8 90.9 113.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 266 OD2 REMARK 620 2 GLU B 279 OE2 91.2 REMARK 620 3 ADP B 403 O3B 175.1 91.5 REMARK 620 4 ADP B 403 O1A 96.9 89.5 79.1 REMARK 620 5 DS0 B 404 O9 95.5 85.0 88.7 166.5 REMARK 620 6 HOH B 547 O 82.0 172.7 95.1 88.8 98.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 279 OE1 REMARK 620 2 GLU B 279 OE2 54.5 REMARK 620 3 ASN B 281 OD1 81.1 84.1 REMARK 620 4 ADP B 403 O1B 78.9 73.6 156.1 REMARK 620 5 DS0 B 404 O11 147.4 93.5 90.3 99.3 REMARK 620 6 HOH B 546 O 94.6 148.6 97.5 97.2 117.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 266 OD2 REMARK 620 2 GLU C 279 OE2 86.0 REMARK 620 3 ADP C 403 O2B 168.5 101.7 REMARK 620 4 ADP C 403 O1A 87.1 98.5 83.4 REMARK 620 5 DS0 C 404 O9 94.4 96.3 93.2 165.3 REMARK 620 6 HOH C 516 O 81.5 167.5 90.7 81.7 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 279 OE1 REMARK 620 2 GLU C 279 OE2 59.9 REMARK 620 3 ASN C 281 OD1 88.5 86.3 REMARK 620 4 ADP C 403 O1B 83.5 91.6 171.7 REMARK 620 5 DS0 C 404 O11 152.5 93.9 98.9 89.2 REMARK 620 6 HOH C 545 O 92.7 150.6 81.9 96.2 114.4 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8EVV RELATED DB: PDB REMARK 900 APO FORM OF RELATED ISOFORM REMARK 900 RELATED ID: 8EVW RELATED DB: PDB REMARK 900 PRODUCT BOUND FORM OF RELATED ISOFORM REMARK 900 RELATED ID: 8EVX RELATED DB: PDB REMARK 900 INHIBITOR BOUND FORM OF RELATED ISOFORM REMARK 900 RELATED ID: 8EVY RELATED DB: PDB REMARK 900 PRODUCT BOUND FORM OF THE SAME PROTEIN DBREF 8EVZ A 1 319 UNP Q9LCT6 DDLB_PSEAE 1 319 DBREF 8EVZ B 1 319 UNP Q9LCT6 DDLB_PSEAE 1 319 DBREF 8EVZ C 1 319 UNP Q9LCT6 DDLB_PSEAE 1 319 SEQADV 8EVZ SER A 0 UNP Q9LCT6 EXPRESSION TAG SEQADV 8EVZ SER B 0 UNP Q9LCT6 EXPRESSION TAG SEQADV 8EVZ SER C 0 UNP Q9LCT6 EXPRESSION TAG SEQRES 1 A 320 SER MET ASN LEU CYS LEU ASP SER LEU LEU ASN GLY THR SEQRES 2 A 320 GLN ASP PRO LYS ALA PHE GLY ARG VAL ALA VAL LEU PHE SEQRES 3 A 320 GLY GLY LYS SER ALA GLU ARG GLU VAL SER LEU LYS SER SEQRES 4 A 320 GLY ALA MET VAL LEU GLN SER LEU LEU ALA ALA GLY VAL SEQRES 5 A 320 ASP ALA PHE GLY ILE ASP VAL GLY GLU ASP LEU LEU GLN SEQRES 6 A 320 ARG LEU VAL GLU GLU LYS ILE ASP ARG ALA PHE ILE ILE SEQRES 7 A 320 LEU HIS GLY ARG GLY GLY GLU ASP GLY SER MET GLN GLY SEQRES 8 A 320 LEU LEU GLU CYS ALA GLY ILE PRO TYR THR GLY SER GLY SEQRES 9 A 320 VAL LEU ALA SER ALA LEU ALA MET ASP LYS LEU ARG THR SEQRES 10 A 320 LYS ARG VAL TRP LEU SER LEU GLY LEU PRO THR PRO ASP SEQRES 11 A 320 TYR ALA VAL LEU ALA SER GLU ASP ASP CYS ARG GLU ALA SEQRES 12 A 320 ALA GLN ARG LEU GLY PHE PRO LEU ILE VAL LYS PRO ALA SEQRES 13 A 320 HIS GLU GLY SER SER ILE GLY MET ALA LYS VAL GLY GLY SEQRES 14 A 320 LEU ASP GLU LEU ILE ALA ALA TRP ARG GLU ALA ALA ARG SEQRES 15 A 320 TYR ASP SER GLN VAL LEU VAL GLU GLN TRP ILE SER GLY SEQRES 16 A 320 PRO GLU PHE THR VAL ALA THR LEU ARG GLY GLN VAL LEU SEQRES 17 A 320 PRO ALA ILE ARG LEU GLY THR PRO HIS THR PHE TYR ASP SEQRES 18 A 320 TYR ASP ALA LYS TYR LEU ALA SER ASP THR ARG TYR GLN SEQRES 19 A 320 VAL PRO CYS GLY LEU ASP GLU ALA LYS GLU ARG GLU LEU SEQRES 20 A 320 LYS GLU LEU THR ALA ARG ALA CYS ASP ALA LEU GLY ILE SEQRES 21 A 320 GLN GLY TRP GLY ARG ALA ASP VAL MET GLN ASP ALA GLU SEQRES 22 A 320 GLY ARG PHE TRP LEU LEU GLU VAL ASN THR ALA PRO GLY SEQRES 23 A 320 MET THR ASP HIS SER LEU VAL PRO MET ALA ALA ARG ALA SEQRES 24 A 320 ALA GLY LEU ASP PHE GLN GLN LEU VAL LEU ALA ILE LEU SEQRES 25 A 320 ALA ASP SER ARG GLU ALA ARG GLY SEQRES 1 B 320 SER MET ASN LEU CYS LEU ASP SER LEU LEU ASN GLY THR SEQRES 2 B 320 GLN ASP PRO LYS ALA PHE GLY ARG VAL ALA VAL LEU PHE SEQRES 3 B 320 GLY GLY LYS SER ALA GLU ARG GLU VAL SER LEU LYS SER SEQRES 4 B 320 GLY ALA MET VAL LEU GLN SER LEU LEU ALA ALA GLY VAL SEQRES 5 B 320 ASP ALA PHE GLY ILE ASP VAL GLY GLU ASP LEU LEU GLN SEQRES 6 B 320 ARG LEU VAL GLU GLU LYS ILE ASP ARG ALA PHE ILE ILE SEQRES 7 B 320 LEU HIS GLY ARG GLY GLY GLU ASP GLY SER MET GLN GLY SEQRES 8 B 320 LEU LEU GLU CYS ALA GLY ILE PRO TYR THR GLY SER GLY SEQRES 9 B 320 VAL LEU ALA SER ALA LEU ALA MET ASP LYS LEU ARG THR SEQRES 10 B 320 LYS ARG VAL TRP LEU SER LEU GLY LEU PRO THR PRO ASP SEQRES 11 B 320 TYR ALA VAL LEU ALA SER GLU ASP ASP CYS ARG GLU ALA SEQRES 12 B 320 ALA GLN ARG LEU GLY PHE PRO LEU ILE VAL LYS PRO ALA SEQRES 13 B 320 HIS GLU GLY SER SER ILE GLY MET ALA LYS VAL GLY GLY SEQRES 14 B 320 LEU ASP GLU LEU ILE ALA ALA TRP ARG GLU ALA ALA ARG SEQRES 15 B 320 TYR ASP SER GLN VAL LEU VAL GLU GLN TRP ILE SER GLY SEQRES 16 B 320 PRO GLU PHE THR VAL ALA THR LEU ARG GLY GLN VAL LEU SEQRES 17 B 320 PRO ALA ILE ARG LEU GLY THR PRO HIS THR PHE TYR ASP SEQRES 18 B 320 TYR ASP ALA LYS TYR LEU ALA SER ASP THR ARG TYR GLN SEQRES 19 B 320 VAL PRO CYS GLY LEU ASP GLU ALA LYS GLU ARG GLU LEU SEQRES 20 B 320 LYS GLU LEU THR ALA ARG ALA CYS ASP ALA LEU GLY ILE SEQRES 21 B 320 GLN GLY TRP GLY ARG ALA ASP VAL MET GLN ASP ALA GLU SEQRES 22 B 320 GLY ARG PHE TRP LEU LEU GLU VAL ASN THR ALA PRO GLY SEQRES 23 B 320 MET THR ASP HIS SER LEU VAL PRO MET ALA ALA ARG ALA SEQRES 24 B 320 ALA GLY LEU ASP PHE GLN GLN LEU VAL LEU ALA ILE LEU SEQRES 25 B 320 ALA ASP SER ARG GLU ALA ARG GLY SEQRES 1 C 320 SER MET ASN LEU CYS LEU ASP SER LEU LEU ASN GLY THR SEQRES 2 C 320 GLN ASP PRO LYS ALA PHE GLY ARG VAL ALA VAL LEU PHE SEQRES 3 C 320 GLY GLY LYS SER ALA GLU ARG GLU VAL SER LEU LYS SER SEQRES 4 C 320 GLY ALA MET VAL LEU GLN SER LEU LEU ALA ALA GLY VAL SEQRES 5 C 320 ASP ALA PHE GLY ILE ASP VAL GLY GLU ASP LEU LEU GLN SEQRES 6 C 320 ARG LEU VAL GLU GLU LYS ILE ASP ARG ALA PHE ILE ILE SEQRES 7 C 320 LEU HIS GLY ARG GLY GLY GLU ASP GLY SER MET GLN GLY SEQRES 8 C 320 LEU LEU GLU CYS ALA GLY ILE PRO TYR THR GLY SER GLY SEQRES 9 C 320 VAL LEU ALA SER ALA LEU ALA MET ASP LYS LEU ARG THR SEQRES 10 C 320 LYS ARG VAL TRP LEU SER LEU GLY LEU PRO THR PRO ASP SEQRES 11 C 320 TYR ALA VAL LEU ALA SER GLU ASP ASP CYS ARG GLU ALA SEQRES 12 C 320 ALA GLN ARG LEU GLY PHE PRO LEU ILE VAL LYS PRO ALA SEQRES 13 C 320 HIS GLU GLY SER SER ILE GLY MET ALA LYS VAL GLY GLY SEQRES 14 C 320 LEU ASP GLU LEU ILE ALA ALA TRP ARG GLU ALA ALA ARG SEQRES 15 C 320 TYR ASP SER GLN VAL LEU VAL GLU GLN TRP ILE SER GLY SEQRES 16 C 320 PRO GLU PHE THR VAL ALA THR LEU ARG GLY GLN VAL LEU SEQRES 17 C 320 PRO ALA ILE ARG LEU GLY THR PRO HIS THR PHE TYR ASP SEQRES 18 C 320 TYR ASP ALA LYS TYR LEU ALA SER ASP THR ARG TYR GLN SEQRES 19 C 320 VAL PRO CYS GLY LEU ASP GLU ALA LYS GLU ARG GLU LEU SEQRES 20 C 320 LYS GLU LEU THR ALA ARG ALA CYS ASP ALA LEU GLY ILE SEQRES 21 C 320 GLN GLY TRP GLY ARG ALA ASP VAL MET GLN ASP ALA GLU SEQRES 22 C 320 GLY ARG PHE TRP LEU LEU GLU VAL ASN THR ALA PRO GLY SEQRES 23 C 320 MET THR ASP HIS SER LEU VAL PRO MET ALA ALA ARG ALA SEQRES 24 C 320 ALA GLY LEU ASP PHE GLN GLN LEU VAL LEU ALA ILE LEU SEQRES 25 C 320 ALA ASP SER ARG GLU ALA ARG GLY HET MG A 401 1 HET MG A 402 1 HET ADP A 403 27 HET DS0 A 404 11 HET MG B 401 1 HET MG B 402 1 HET ADP B 403 27 HET DS0 B 404 11 HET MG C 401 1 HET MG C 402 1 HET ADP C 403 27 HET DS0 C 404 11 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM DS0 [(4R)-4-AZANYL-4,5-DIHYDRO-1,2-OXAZOL-3-YL] DIHYDROGEN HETNAM 2 DS0 PHOSPHATE FORMUL 4 MG 6(MG 2+) FORMUL 6 ADP 3(C10 H15 N5 O10 P2) FORMUL 7 DS0 3(C3 H7 N2 O5 P) FORMUL 16 HOH *302(H2 O) HELIX 1 AA1 CYS A 4 LEU A 9 1 6 HELIX 2 AA2 ASP A 14 PHE A 18 5 5 HELIX 3 AA3 GLU A 31 ALA A 49 1 19 HELIX 4 AA4 ASP A 61 GLU A 69 1 9 HELIX 5 AA5 GLY A 86 GLY A 96 1 11 HELIX 6 AA6 GLY A 103 ASP A 112 1 10 HELIX 7 AA7 ASP A 112 LEU A 123 1 12 HELIX 8 AA8 SER A 135 GLY A 147 1 13 HELIX 9 AA9 GLY A 168 ARG A 181 1 14 HELIX 10 AB1 ASP A 220 LEU A 226 1 7 HELIX 11 AB2 ASP A 239 ALA A 256 1 18 HELIX 12 AB3 SER A 290 ALA A 299 1 10 HELIX 13 AB4 ASP A 302 SER A 314 1 13 HELIX 14 AB5 LEU B 5 LEU B 9 1 5 HELIX 15 AB6 ASP B 14 PHE B 18 5 5 HELIX 16 AB7 GLU B 31 ALA B 49 1 19 HELIX 17 AB8 ASP B 61 GLU B 69 1 9 HELIX 18 AB9 GLY B 86 ALA B 95 1 10 HELIX 19 AC1 GLY B 103 ASP B 112 1 10 HELIX 20 AC2 ASP B 112 LEU B 123 1 12 HELIX 21 AC3 SER B 135 GLY B 147 1 13 HELIX 22 AC4 GLY B 168 ALA B 180 1 13 HELIX 23 AC5 ASP B 220 LEU B 226 1 7 HELIX 24 AC6 ASP B 239 GLY B 258 1 20 HELIX 25 AC7 SER B 290 GLY B 300 1 11 HELIX 26 AC8 ASP B 302 ARG B 315 1 14 HELIX 27 AC9 CYS C 4 LEU C 9 1 6 HELIX 28 AD1 ASN C 10 PHE C 18 5 9 HELIX 29 AD2 GLU C 31 ALA C 49 1 19 HELIX 30 AD3 ASP C 61 GLU C 69 1 9 HELIX 31 AD4 GLY C 86 ALA C 95 1 10 HELIX 32 AD5 GLY C 103 ASP C 112 1 10 HELIX 33 AD6 ASP C 112 LEU C 123 1 12 HELIX 34 AD7 SER C 135 GLY C 147 1 13 HELIX 35 AD8 GLY C 168 ALA C 180 1 13 HELIX 36 AD9 ASP C 220 LEU C 226 1 7 HELIX 37 AE1 ASP C 239 ALA C 256 1 18 HELIX 38 AE2 SER C 290 GLY C 300 1 11 HELIX 39 AE3 ASP C 302 SER C 314 1 13 SHEET 1 AA1 3 ASP A 52 VAL A 58 0 SHEET 2 AA1 3 ARG A 20 GLY A 26 1 N VAL A 23 O PHE A 54 SHEET 3 AA1 3 ARG A 73 ILE A 76 1 O PHE A 75 N ALA A 22 SHEET 1 AA2 4 TYR A 130 VAL A 132 0 SHEET 2 AA2 4 VAL A 186 GLN A 190 -1 O VAL A 188 N ALA A 131 SHEET 3 AA2 4 LEU A 150 PRO A 154 -1 N ILE A 151 O GLU A 189 SHEET 4 AA2 4 ALA A 164 VAL A 166 -1 O VAL A 166 N LEU A 150 SHEET 1 AA3 5 ARG A 231 GLN A 233 0 SHEET 2 AA3 5 GLN A 205 GLY A 213 -1 N GLY A 213 O ARG A 231 SHEET 3 AA3 5 GLU A 196 LEU A 202 -1 N LEU A 202 O GLN A 205 SHEET 4 AA3 5 TRP A 262 GLN A 269 -1 O VAL A 267 N PHE A 197 SHEET 5 AA3 5 PHE A 275 ASN A 281 -1 O TRP A 276 N MET A 268 SHEET 1 AA4 3 ASP B 52 VAL B 58 0 SHEET 2 AA4 3 ARG B 20 GLY B 26 1 N VAL B 23 O PHE B 54 SHEET 3 AA4 3 ARG B 73 ILE B 76 1 O PHE B 75 N ALA B 22 SHEET 1 AA5 4 TYR B 130 VAL B 132 0 SHEET 2 AA5 4 VAL B 186 GLN B 190 -1 O VAL B 188 N ALA B 131 SHEET 3 AA5 4 LEU B 150 PRO B 154 -1 N ILE B 151 O GLU B 189 SHEET 4 AA5 4 ALA B 164 VAL B 166 -1 O ALA B 164 N VAL B 152 SHEET 1 AA6 5 ARG B 231 GLN B 233 0 SHEET 2 AA6 5 GLN B 205 GLY B 213 -1 N GLY B 213 O ARG B 231 SHEET 3 AA6 5 GLU B 196 LEU B 202 -1 N LEU B 202 O GLN B 205 SHEET 4 AA6 5 TRP B 262 GLN B 269 -1 O VAL B 267 N PHE B 197 SHEET 5 AA6 5 PHE B 275 ASN B 281 -1 O LEU B 278 N ASP B 266 SHEET 1 AA7 3 ASP C 52 VAL C 58 0 SHEET 2 AA7 3 ARG C 20 GLY C 26 1 N PHE C 25 O VAL C 58 SHEET 3 AA7 3 ARG C 73 ILE C 76 1 O ARG C 73 N ALA C 22 SHEET 1 AA8 4 TYR C 130 LEU C 133 0 SHEET 2 AA8 4 VAL C 186 GLN C 190 -1 O VAL C 186 N LEU C 133 SHEET 3 AA8 4 LEU C 150 PRO C 154 -1 N ILE C 151 O GLU C 189 SHEET 4 AA8 4 ALA C 164 VAL C 166 -1 O ALA C 164 N VAL C 152 SHEET 1 AA9 4 GLN C 205 VAL C 206 0 SHEET 2 AA9 4 GLU C 196 LEU C 202 -1 N LEU C 202 O GLN C 205 SHEET 3 AA9 4 ILE C 210 GLY C 213 -1 O LEU C 212 N GLU C 196 SHEET 4 AA9 4 ARG C 231 GLN C 233 -1 O ARG C 231 N GLY C 213 SHEET 1 AB1 4 GLN C 205 VAL C 206 0 SHEET 2 AB1 4 GLU C 196 LEU C 202 -1 N LEU C 202 O GLN C 205 SHEET 3 AB1 4 TRP C 262 GLN C 269 -1 O VAL C 267 N PHE C 197 SHEET 4 AB1 4 PHE C 275 ASN C 281 -1 O LEU C 278 N ASP C 266 SSBOND 1 CYS C 4 CYS C 4 1555 4555 2.04 LINK OD2 ASP A 266 MG MG A 401 1555 1555 2.16 LINK OE2 GLU A 279 MG MG A 401 1555 1555 2.07 LINK OE1 GLU A 279 MG MG A 402 1555 1555 2.42 LINK OE2 GLU A 279 MG MG A 402 1555 1555 2.17 LINK OD1 ASN A 281 MG MG A 402 1555 1555 1.98 LINK MG MG A 401 O2B ADP A 403 1555 1555 1.97 LINK MG MG A 401 O2A ADP A 403 1555 1555 2.01 LINK MG MG A 401 O11 DS0 A 404 1555 1555 1.88 LINK MG MG A 401 O HOH A 550 1555 1555 2.27 LINK MG MG A 402 O3B ADP A 403 1555 1555 2.13 LINK MG MG A 402 O10 DS0 A 404 1555 1555 1.86 LINK MG MG A 402 O HOH A 555 1555 1555 2.06 LINK OD2 ASP B 266 MG MG B 402 1555 1555 2.03 LINK OE1 GLU B 279 MG MG B 401 1555 1555 2.39 LINK OE2 GLU B 279 MG MG B 401 1555 1555 2.42 LINK OE2 GLU B 279 MG MG B 402 1555 1555 2.00 LINK OD1 ASN B 281 MG MG B 401 1555 1555 2.19 LINK MG MG B 401 O1B ADP B 403 1555 1555 2.12 LINK MG MG B 401 O11 DS0 B 404 1555 1555 1.92 LINK MG MG B 401 O HOH B 546 1555 1555 2.14 LINK MG MG B 402 O3B ADP B 403 1555 1555 2.25 LINK MG MG B 402 O1A ADP B 403 1555 1555 2.04 LINK MG MG B 402 O9 DS0 B 404 1555 1555 1.99 LINK MG MG B 402 O HOH B 547 1555 1555 2.08 LINK OD2 ASP C 266 MG MG C 402 1555 1555 2.13 LINK OE1 GLU C 279 MG MG C 401 1555 1555 2.29 LINK OE2 GLU C 279 MG MG C 401 1555 1555 2.09 LINK OE2 GLU C 279 MG MG C 402 1555 1555 1.94 LINK OD1 ASN C 281 MG MG C 401 1555 1555 2.12 LINK MG MG C 401 O1B ADP C 403 1555 1555 1.98 LINK MG MG C 401 O11 DS0 C 404 1555 1555 1.92 LINK MG MG C 401 O HOH C 545 1555 1555 2.40 LINK MG MG C 402 O2B ADP C 403 1555 1555 2.06 LINK MG MG C 402 O1A ADP C 403 1555 1555 2.21 LINK MG MG C 402 O9 DS0 C 404 1555 1555 1.95 LINK MG MG C 402 O HOH C 516 1555 1555 2.45 CISPEP 1 PHE A 148 PRO A 149 0 0.56 CISPEP 2 VAL A 234 PRO A 235 0 2.37 CISPEP 3 PHE B 148 PRO B 149 0 -1.83 CISPEP 4 VAL B 234 PRO B 235 0 3.32 CISPEP 5 PHE C 148 PRO C 149 0 -0.52 CISPEP 6 VAL C 234 PRO C 235 0 3.15 CRYST1 90.664 199.046 177.084 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011030 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005647 0.00000