HEADER VIRAL PROTEIN/DNA 26-OCT-22 8EXX TITLE HERPES SIMPLEX VIRUS 1 POLYMERASE HOLOENZYME BOUND TO DNA AND TITLE 2 FOSCARNET (PRE-TRANSLOCATION STATE) CAVEAT 8EXX DOC P 0 HAS WRONG CHIRALITY AT ATOM C4' COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: HERPES SIMPLEX VIRUS TYPE 1 (KOS STRAIN) DNA COMPND 7 POLYMERASE CATALYTIC SUBUNIT UL30 WITH ITS N-TERMINAL 42 RESIDUES COMPND 8 DELETED AND REPLACED BY AN N-TERMINAL POLY-HISTIDINE TAG IN THE COMPND 9 EXPRESSION CONSTRUCT.; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA POLYMERASE PROCESSIVITY FACTOR; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: POLYMERASE ACCESSORY PROTEIN; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: HERPES SIMPLEX VIRUS TYPE 1 (KOS STRAIN) DNA COMPND 16 POLYMERASE PROCESSIVITY FACTOR UL42 RESIDUES 1-340 TAGGED WITH A COMPND 17 PRESCISSION PROTEASE CLEAVAGE SITE FOLLOWED BY A MALTOSE BINDING COMPND 18 PROTEIN (MBP) TAG IN THE EXPRESSION CONSTRUCT; COMPND 19 MOL_ID: 3; COMPND 20 MOLECULE: PRIMER DNA (32-MER); COMPND 21 CHAIN: P; COMPND 22 ENGINEERED: YES; COMPND 23 OTHER_DETAILS: 3'-DEOXYL PRIMER DNA STRAND, NO MISMATCH WITH TEMPLATE COMPND 24 STRAND; COMPND 25 MOL_ID: 4; COMPND 26 MOLECULE: TEMPLATE DNA (50-MER); COMPND 27 CHAIN: T; COMPND 28 ENGINEERED: YES; COMPND 29 OTHER_DETAILS: NO MISMATCH WITH PRIMER STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ALPHAHERPESVIRUS 1 STRAIN KOS; SOURCE 3 ORGANISM_TAXID: 10306; SOURCE 4 GENE: UL30, HHV1GP046; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: RECOMBINANT BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBACHTC::POLY-HISTIDINE-UL30DN42; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN ALPHAHERPESVIRUS 1 STRAIN KOS; SOURCE 12 ORGANISM_TAXID: 10306; SOURCE 13 GENE: UL42, HHV1GP061; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: PLYSS CELLS (NOVOGEN); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PMAL-C2(MBP-PP)::UL42DC340; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630; SOURCE 23 MOL_ID: 4; SOURCE 24 SYNTHETIC: YES; SOURCE 25 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 26 ORGANISM_TAXID: 32630 KEYWDS HERPES SIMPLEX VIRUS, REPLICATION, DNA POLYMERASE HOLOENZYME, UL30, KEYWDS 2 UL42, PRE-TRANSLOCATION, FOSCARNET, VIRAL PROTEIN, VIRAL PROTEIN-DNA KEYWDS 3 COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR J.PAN,J.ABRAHAM,D.M.COEN,S.SHANKAR,P.YANG,J.HOGLE REVDAT 2 11-SEP-24 8EXX 1 JRNL REVDAT 1 04-SEP-24 8EXX 0 JRNL AUTH S.SHANKAR,J.PAN,P.YANG,Y.BIAN,G.OROSZLAN,Z.YU,P.MUKHERJEE, JRNL AUTH 2 D.J.FILMAN,J.M.HOGLE,M.SHEKHAR,D.M.COEN,J.ABRAHAM JRNL TITL VIRAL DNA POLYMERASE STRUCTURES REVEAL MECHANISMS OF JRNL TITL 2 ANTIVIRAL DRUG RESISTANCE. JRNL REF CELL 2024 JRNL REFN ISSN 1097-4172 JRNL PMID 39197451 JRNL DOI 10.1016/J.CELL.2024.07.048 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOLO, SERIALEM, CTFFIND, UCSF REMARK 3 CHIMERA, O, PHENIX, RELION, RELION, REMARK 3 RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : 67.950 REMARK 3 REMARK 3 FITTING PROCEDURE : RIGID BODY, MINIMIZATION_GLOBAL, REMARK 3 LOCAL_GRID_SEARCH, ADP REFINEMENT REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 264472 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8EXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-22. REMARK 100 THE DEPOSITION ID IS D_1000269360. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HERPES SIMPLEX VIRUS 1 REMARK 245 POLYMERASE HOLOENZYME UL30:UL42 REMARK 245 IN COMPLEX WITH DNA AND REMARK 245 FOSCARNET REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.30 REMARK 245 SAMPLE SUPPORT DETAILS : GRIDS WERE DISCHARGE IN A PELCO REMARK 245 EASIGLOW AT 15 MA FOR 30 REMARK 245 SECONDS UNDER 0.39 MBAR REMARK 245 SAMPLE VITRIFICATION DETAILS : 3 MICROLITERS OF SAMPLE WERE REMARK 245 BLOTTED FOR 3 SECONDS WITH REMARK 245 FILTER PAPER SATURATED UNDER REMARK 245 100% HUMIDITY PRIOR TO PLUNGING. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : EACH COMPLEX CONSISTS OF ONE REMARK 245 HSV-1 UL30, ONE HSV-1 UL42, ONE TEMPLATE DNA, ONE PRIMER DNA (3'- REMARK 245 DEOXYL), AND ONE FOSCARNET MOLECULE. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4914 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5311.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : 60606 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 465 HIS A 42 REMARK 465 ASN A 43 REMARK 465 PHE A 44 REMARK 465 TYR A 45 REMARK 465 ASN A 46 REMARK 465 PRO A 47 REMARK 465 TYR A 48 REMARK 465 LEU A 49 REMARK 465 ALA A 50 REMARK 465 PRO A 51 REMARK 465 VAL A 52 REMARK 465 GLY A 53 REMARK 465 THR A 54 REMARK 465 GLN A 55 REMARK 465 GLN A 56 REMARK 465 LYS A 57 REMARK 465 PRO A 58 REMARK 465 THR A 59 REMARK 465 CYS A 218 REMARK 465 ARG A 219 REMARK 465 ALA A 220 REMARK 465 PRO A 221 REMARK 465 ARG A 222 REMARK 465 PRO A 651 REMARK 465 LYS A 652 REMARK 465 ARG A 653 REMARK 465 PRO A 654 REMARK 465 ALA A 655 REMARK 465 ALA A 656 REMARK 465 ALA A 657 REMARK 465 ARG A 658 REMARK 465 GLU A 659 REMARK 465 ASP A 660 REMARK 465 GLU A 661 REMARK 465 GLU A 662 REMARK 465 ARG A 663 REMARK 465 PRO A 664 REMARK 465 GLU A 665 REMARK 465 GLU A 666 REMARK 465 GLU A 667 REMARK 465 GLY A 668 REMARK 465 GLU A 669 REMARK 465 ASP A 670 REMARK 465 GLU A 671 REMARK 465 ASP A 672 REMARK 465 GLU A 673 REMARK 465 ARG A 674 REMARK 465 GLU A 675 REMARK 465 GLU A 676 REMARK 465 GLY A 677 REMARK 465 GLY A 678 REMARK 465 GLY A 679 REMARK 465 GLU A 680 REMARK 465 ARG A 681 REMARK 465 GLU A 682 REMARK 465 PRO A 683 REMARK 465 GLU A 684 REMARK 465 GLY A 685 REMARK 465 ALA A 686 REMARK 465 ARG A 687 REMARK 465 GLU A 688 REMARK 465 THR A 689 REMARK 465 ALA A 690 REMARK 465 ALA A 1092 REMARK 465 LEU A 1093 REMARK 465 ARG A 1094 REMARK 465 GLU A 1095 REMARK 465 LEU A 1096 REMARK 465 ASP A 1097 REMARK 465 ALA A 1098 REMARK 465 ALA A 1099 REMARK 465 ALA A 1100 REMARK 465 PRO A 1101 REMARK 465 GLY A 1102 REMARK 465 ASP A 1103 REMARK 465 GLU A 1104 REMARK 465 PRO A 1105 REMARK 465 ALA A 1106 REMARK 465 PRO A 1107 REMARK 465 PRO A 1108 REMARK 465 ALA A 1109 REMARK 465 ALA A 1110 REMARK 465 LEU A 1111 REMARK 465 PRO A 1112 REMARK 465 SER A 1113 REMARK 465 PRO A 1114 REMARK 465 ALA A 1115 REMARK 465 LYS A 1116 REMARK 465 ARG A 1117 REMARK 465 PRO A 1118 REMARK 465 ARG A 1119 REMARK 465 GLU A 1120 REMARK 465 THR A 1121 REMARK 465 PRO A 1122 REMARK 465 SER A 1123 REMARK 465 HIS A 1124 REMARK 465 ALA A 1125 REMARK 465 ASP A 1126 REMARK 465 PRO A 1127 REMARK 465 PRO A 1128 REMARK 465 GLY A 1129 REMARK 465 GLY A 1130 REMARK 465 ALA A 1131 REMARK 465 SER A 1132 REMARK 465 LYS A 1133 REMARK 465 PRO A 1134 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 VAL B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 SER B 12 REMARK 465 PRO B 13 REMARK 465 VAL B 14 REMARK 465 GLU B 15 REMARK 465 ASP B 16 REMARK 465 ALA B 17 REMARK 465 SER B 18 REMARK 465 ASP B 19 REMARK 465 ALA B 20 REMARK 465 SER B 21 REMARK 465 LEU B 22 REMARK 465 GLY B 23 REMARK 465 GLN B 24 REMARK 465 PRO B 25 REMARK 465 GLU B 26 REMARK 465 GLU B 27 REMARK 465 GLU B 226 REMARK 465 GLY B 227 REMARK 465 VAL B 228 REMARK 465 SER B 229 REMARK 465 SER B 230 REMARK 465 SER B 231 REMARK 465 THR B 232 REMARK 465 SER B 233 REMARK 465 THR B 234 REMARK 465 GLN B 235 REMARK 465 VAL B 236 REMARK 465 GLN B 237 REMARK 465 ILE B 238 REMARK 465 LEU B 239 REMARK 465 SER B 240 REMARK 465 ASN B 241 REMARK 465 ALA B 242 REMARK 465 LEU B 243 REMARK 465 THR B 244 REMARK 465 LYS B 245 REMARK 465 ALA B 246 REMARK 465 GLY B 247 REMARK 465 GLN B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 ALA B 251 REMARK 465 ILE B 320 REMARK 465 CYS B 321 REMARK 465 LEU B 322 REMARK 465 ASP B 323 REMARK 465 TRP B 324 REMARK 465 LEU B 325 REMARK 465 GLY B 326 REMARK 465 HIS B 327 REMARK 465 SER B 328 REMARK 465 GLN B 329 REMARK 465 GLY B 330 REMARK 465 SER B 331 REMARK 465 PRO B 332 REMARK 465 SER B 333 REMARK 465 ALA B 334 REMARK 465 GLY B 335 REMARK 465 SER B 336 REMARK 465 SER B 337 REMARK 465 ALA B 338 REMARK 465 SER B 339 REMARK 465 ARG B 340 REMARK 465 DG P -31 REMARK 465 DA P -30 REMARK 465 DT P -29 REMARK 465 DT P -28 REMARK 465 DA P -27 REMARK 465 DC T -18 REMARK 465 DA T -17 REMARK 465 DC T -16 REMARK 465 DA T -15 REMARK 465 DC T -14 REMARK 465 DA T -13 REMARK 465 DC T -12 REMARK 465 DA T -11 REMARK 465 DC T -10 REMARK 465 DA T -9 REMARK 465 DC T -8 REMARK 465 DA T -7 REMARK 465 DC T -6 REMARK 465 DA T -5 REMARK 465 DC T -4 REMARK 465 DT T 27 REMARK 465 DA T 28 REMARK 465 DA T 29 REMARK 465 DT T 30 REMARK 465 DC T 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 183 OG1 THR B 186 1.98 REMARK 500 OG1 THR B 135 O LYS B 159 2.05 REMARK 500 O ALA A 230 OH TYR A 281 2.10 REMARK 500 N LYS A 104 OE2 GLU A 445 2.16 REMARK 500 NZ LYS A 1057 OE1 GLU A 1144 2.17 REMARK 500 NE ARG A 330 OE2 GLU A 342 2.19 REMARK 500 OH TYR A 851 NH1 ARG A 855 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 316 CD1 TYR A 316 CE1 -0.093 REMARK 500 TYR A 316 CE1 TYR A 316 CZ -0.081 REMARK 500 TYR A 362 CD1 TYR A 362 CE1 -0.099 REMARK 500 TYR A 362 CE1 TYR A 362 CZ -0.093 REMARK 500 TYR A 362 CE2 TYR A 362 CD2 -0.107 REMARK 500 CYS A 396 CB CYS A 396 SG -0.115 REMARK 500 GLU A 445 CB GLU A 445 CG -0.159 REMARK 500 TRP A 502 CB TRP A 502 CG -0.111 REMARK 500 CYS A 732 CB CYS A 732 SG -0.134 REMARK 500 TYR A 884 CE2 TYR A 884 CD2 -0.100 REMARK 500 CYS A 963 CB CYS A 963 SG -0.140 REMARK 500 PRO B 170 CG PRO B 170 CD -0.385 REMARK 500 PRO B 170 CD PRO B 170 N 0.120 REMARK 500 DG P -6 O3' DG P -6 C3' -0.042 REMARK 500 DG P -4 O3' DG P -4 C3' -0.080 REMARK 500 DG P -3 O3' DG P -3 C3' -0.040 REMARK 500 DA P -2 O3' DA P -2 C3' -0.037 REMARK 500 DA P -2 C5 DA P -2 N7 -0.044 REMARK 500 DA P -2 N9 DA P -2 C4 -0.063 REMARK 500 DT P -1 N1 DT P -1 C2 -0.055 REMARK 500 DA T -1 O3' DA T -1 C3' -0.046 REMARK 500 DA T 1 O3' DA T 1 C3' -0.058 REMARK 500 DT T 2 O3' DT T 2 C3' -0.063 REMARK 500 DT T 2 N3 DT T 2 C4 -0.051 REMARK 500 DC T 3 O3' DC T 3 C3' -0.071 REMARK 500 DC T 3 N1 DC T 3 C6 -0.043 REMARK 500 DC T 4 N1 DC T 4 C6 -0.042 REMARK 500 DC T 4 N3 DC T 4 C4 -0.042 REMARK 500 DC T 5 O3' DC T 5 C3' -0.057 REMARK 500 DC T 5 N1 DC T 5 C6 -0.040 REMARK 500 DC T 6 O3' DC T 6 C3' -0.039 REMARK 500 DG T 7 C5 DG T 7 N7 -0.043 REMARK 500 DG T 8 O3' DG T 8 C3' -0.066 REMARK 500 DG T 14 O3' DG T 14 C3' -0.045 REMARK 500 DC T 17 O3' DC T 17 C3' -0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 581 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 LYS B 105 CD - CE - NZ ANGL. DEV. = 16.2 DEGREES REMARK 500 PRO B 170 CA - N - CD ANGL. DEV. = -20.6 DEGREES REMARK 500 PRO B 170 CA - CB - CG ANGL. DEV. = -13.6 DEGREES REMARK 500 PRO B 170 N - CD - CG ANGL. DEV. = -16.2 DEGREES REMARK 500 DA P -24 C3' - O3' - P ANGL. DEV. = 15.2 DEGREES REMARK 500 DA P -23 C3' - O3' - P ANGL. DEV. = 10.0 DEGREES REMARK 500 DC P -20 C3' - O3' - P ANGL. DEV. = 18.0 DEGREES REMARK 500 DA P -18 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC P -14 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC P -14 C3' - O3' - P ANGL. DEV. = 19.4 DEGREES REMARK 500 DG P -13 C3' - O3' - P ANGL. DEV. = 21.1 DEGREES REMARK 500 DG P -12 OP1 - P - OP2 ANGL. DEV. = -12.0 DEGREES REMARK 500 DG P -12 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG P -12 C3' - O3' - P ANGL. DEV. = 13.1 DEGREES REMARK 500 DC P -7 O3' - P - O5' ANGL. DEV. = -19.3 DEGREES REMARK 500 DG P -6 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG P -5 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG P -4 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DA P -2 O3' - P - O5' ANGL. DEV. = -11.5 DEGREES REMARK 500 DT P -1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DOC P 0 O3' - P - O5' ANGL. DEV. = 15.2 DEGREES REMARK 500 DA T -3 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA T -3 C3' - O3' - P ANGL. DEV. = 10.6 DEGREES REMARK 500 DC T -2 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC T 6 O3' - P - O5' ANGL. DEV. = -28.9 DEGREES REMARK 500 DA T 11 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DC T 12 C3' - O3' - P ANGL. DEV. = 10.5 DEGREES REMARK 500 DG T 14 O3' - P - O5' ANGL. DEV. = -13.1 DEGREES REMARK 500 DG T 14 C3' - O3' - P ANGL. DEV. = -8.1 DEGREES REMARK 500 DA T 15 C3' - O3' - P ANGL. DEV. = 9.6 DEGREES REMARK 500 DT T 18 O3' - P - O5' ANGL. DEV. = -15.8 DEGREES REMARK 500 DT T 18 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT T 24 C3' - O3' - P ANGL. DEV. = 9.5 DEGREES REMARK 500 DC T 25 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 88 -6.04 -58.47 REMARK 500 ARG A 241 148.62 -170.80 REMARK 500 TYR A 260 149.07 85.88 REMARK 500 GLU A 376 -4.28 73.45 REMARK 500 LEU A 379 54.77 -90.80 REMARK 500 HIS A 408 -5.78 74.57 REMARK 500 VAL A 409 41.52 37.95 REMARK 500 MET A 451 52.79 -91.13 REMARK 500 PRO A 561 47.60 -83.42 REMARK 500 LEU A 593 63.02 37.03 REMARK 500 ASP A 630 53.37 -90.96 REMARK 500 ALA A 646 -166.39 68.20 REMARK 500 LEU A 828 64.46 -159.14 REMARK 500 SER A1038 -1.86 70.38 REMARK 500 LYS A1069 -0.19 77.95 REMARK 500 LEU B 50 53.94 -91.12 REMARK 500 LEU B 54 -0.92 76.25 REMARK 500 ALA B 114 -3.73 74.34 REMARK 500 TYR B 117 61.20 61.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 408 VAL A 409 149.49 REMARK 500 ARG A 642 PHE A 643 -145.25 REMARK 500 PHE A 643 ARG A 644 123.33 REMARK 500 HIS A 1152 GLY A 1153 -149.98 REMARK 500 GLN B 130 ALA B 131 -143.88 REMARK 500 THR B 144 SER B 145 -149.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 717 OD1 REMARK 620 2 PHE A 718 O 40.7 REMARK 620 3 ASP A 888 OD2 60.4 69.0 REMARK 620 4 PPF A1304 O1 60.7 70.6 120.8 REMARK 620 5 PPF A1304 O4 128.9 106.1 160.1 72.7 REMARK 620 6 DOC P 0 O5' 120.7 111.7 60.4 177.7 106.8 REMARK 620 7 DOC P 0 OP1 100.8 131.1 64.2 123.5 122.8 54.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PPF A1304 O1 REMARK 620 2 PPF A1304 O2 52.7 REMARK 620 3 PPF A1304 O3 54.5 56.7 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-28664 RELATED DB: EMDB REMARK 900 HERPES SIMPLEX VIRUS 1 DNA POLYMERASE HOLOENZYME BOUND TO DNA REMARK 900 TEMPLATE AND PRIMER, DNTP-FREE (EDITING MODE) REMARK 900 RELATED ID: EMD-42888 RELATED DB: EMDB REMARK 900 HERPES SIMPLEX VIRUS 1 POLYMERASE HOLOENZYME BOUND TO DNA AND DTTP REMARK 900 IN CLOSED CONFORMATION REMARK 900 RELATED ID: EMD-42891 RELATED DB: EMDB REMARK 900 HERPES SIMPLEX VIRUS 1 POLYMERASE W781V MUTANT HOLOENZYME BOUND TO REMARK 900 DNA IN EDITING CONFORMATION REMARK 900 RELATED ID: EMD-42889 RELATED DB: EMDB REMARK 900 HERPES SIMPLEX VIRUS 1 POLYMERASE HOLOENZYME BOUND TO MISMATCHED REMARK 900 DNA IN EDITING CONFORMATION REMARK 900 RELATED ID: EMD-42890 RELATED DB: EMDB REMARK 900 HERPES SIMPLEX VIRUS 1 POLYMERASE HOLOENZYME BOUND TO DNA AND REMARK 900 ACYCLOVIR TRIPHOSPHATE IN CLOSED CONFORMATION REMARK 900 RELATED ID: EMD-42887 RELATED DB: EMDB REMARK 900 HERPES SIMPLEX VIRUS 1 POLYMERASE HOLOENZYME BOUND TO DNA IN BOTH REMARK 900 OPEN/CLOSED CONFORMATIONS REMARK 900 RELATED ID: EMD-28663 RELATED DB: EMDB REMARK 900 HERPES SIMPLEX VIRUS 1 POLYMERASE HOLOENZYME BOUND TO DNA AND REMARK 900 FOSCARNET (PRE-TRANSLOCATION STATE) DBREF 8EXX A 43 1235 UNP H9E937 H9E937_HHV1 43 1235 DBREF 8EXX B 1 340 UNP H9E949 H9E949_HHV1 1 340 DBREF 8EXX P -31 0 PDB 8EXX 8EXX -31 0 DBREF 8EXX T -18 31 PDB 8EXX 8EXX -18 31 SEQADV 8EXX HIS A 37 UNP H9E937 EXPRESSION TAG SEQADV 8EXX HIS A 38 UNP H9E937 EXPRESSION TAG SEQADV 8EXX HIS A 39 UNP H9E937 EXPRESSION TAG SEQADV 8EXX HIS A 40 UNP H9E937 EXPRESSION TAG SEQADV 8EXX HIS A 41 UNP H9E937 EXPRESSION TAG SEQADV 8EXX HIS A 42 UNP H9E937 EXPRESSION TAG SEQRES 1 A 1199 HIS HIS HIS HIS HIS HIS ASN PHE TYR ASN PRO TYR LEU SEQRES 2 A 1199 ALA PRO VAL GLY THR GLN GLN LYS PRO THR GLY PRO THR SEQRES 3 A 1199 GLN ARG HIS THR TYR TYR SER GLU CYS ASP GLU PHE ARG SEQRES 4 A 1199 PHE ILE ALA PRO ARG VAL LEU ASP GLU ASP ALA PRO PRO SEQRES 5 A 1199 GLU LYS ARG ALA GLY VAL HIS ASP GLY HIS LEU LYS ARG SEQRES 6 A 1199 ALA PRO LYS VAL TYR CYS GLY GLY ASP GLU ARG ASP VAL SEQRES 7 A 1199 LEU ARG VAL GLY SER GLY GLY PHE TRP PRO ARG ARG SER SEQRES 8 A 1199 ARG LEU TRP GLY GLY VAL ASP HIS ALA PRO ALA GLY PHE SEQRES 9 A 1199 ASN PRO THR VAL THR VAL PHE HIS VAL TYR ASP ILE LEU SEQRES 10 A 1199 GLU ASN VAL GLU HIS ALA TYR GLY MET ARG ALA ALA GLN SEQRES 11 A 1199 PHE HIS ALA ARG PHE MET ASP ALA ILE THR PRO THR GLY SEQRES 12 A 1199 THR VAL ILE THR LEU LEU GLY LEU THR PRO GLU GLY HIS SEQRES 13 A 1199 ARG VAL ALA VAL HIS VAL TYR GLY THR ARG GLN TYR PHE SEQRES 14 A 1199 TYR MET ASN LYS GLU GLU VAL ASP ARG HIS LEU GLN CYS SEQRES 15 A 1199 ARG ALA PRO ARG ASP LEU CYS GLU ARG MET ALA ALA ALA SEQRES 16 A 1199 LEU ARG GLU SER PRO GLY ALA SER PHE ARG GLY ILE SER SEQRES 17 A 1199 ALA ASP HIS PHE GLU ALA GLU VAL VAL GLU ARG THR ASP SEQRES 18 A 1199 VAL TYR TYR TYR GLU THR ARG PRO ALA LEU PHE TYR ARG SEQRES 19 A 1199 VAL TYR VAL ARG SER GLY ARG VAL LEU SER TYR LEU CYS SEQRES 20 A 1199 ASP ASN PHE CYS PRO ALA ILE LYS LYS TYR GLU GLY GLY SEQRES 21 A 1199 VAL ASP ALA THR THR ARG PHE ILE LEU ASP ASN PRO GLY SEQRES 22 A 1199 PHE VAL THR PHE GLY TRP TYR ARG LEU LYS PRO GLY ARG SEQRES 23 A 1199 ASN ASN THR LEU ALA GLN PRO ARG ALA PRO MET ALA PHE SEQRES 24 A 1199 GLY THR SER SER ASP VAL GLU PHE ASN CYS THR ALA ASP SEQRES 25 A 1199 ASN LEU ALA ILE GLU GLY GLY MET SER ASP LEU PRO ALA SEQRES 26 A 1199 TYR LYS LEU MET CYS PHE ASP ILE GLU CYS LYS ALA GLY SEQRES 27 A 1199 GLY GLU ASP GLU LEU ALA PHE PRO VAL ALA GLY HIS PRO SEQRES 28 A 1199 GLU ASP LEU VAL ILE GLN ILE SER CYS LEU LEU TYR ASP SEQRES 29 A 1199 LEU SER THR THR ALA LEU GLU HIS VAL LEU LEU PHE SER SEQRES 30 A 1199 LEU GLY SER CYS ASP LEU PRO GLU SER HIS LEU ASN GLU SEQRES 31 A 1199 LEU ALA ALA ARG GLY LEU PRO THR PRO VAL VAL LEU GLU SEQRES 32 A 1199 PHE ASP SER GLU PHE GLU MET LEU LEU ALA PHE MET THR SEQRES 33 A 1199 LEU VAL LYS GLN TYR GLY PRO GLU PHE VAL THR GLY TYR SEQRES 34 A 1199 ASN ILE ILE ASN PHE ASP TRP PRO PHE LEU LEU ALA LYS SEQRES 35 A 1199 LEU THR ASP ILE TYR LYS VAL PRO LEU ASP GLY TYR GLY SEQRES 36 A 1199 ARG MET ASN GLY ARG GLY VAL PHE ARG VAL TRP ASP ILE SEQRES 37 A 1199 GLY GLN SER HIS PHE GLN LYS ARG SER LYS ILE LYS VAL SEQRES 38 A 1199 ASN GLY MET VAL ASN ILE ASP MET TYR GLY ILE ILE THR SEQRES 39 A 1199 ASP LYS ILE LYS LEU SER SER TYR LYS LEU ASN ALA VAL SEQRES 40 A 1199 ALA GLU ALA VAL LEU LYS ASP LYS LYS LYS ASP LEU SER SEQRES 41 A 1199 TYR ARG ASP ILE PRO ALA TYR TYR ALA THR GLY PRO ALA SEQRES 42 A 1199 GLN ARG GLY VAL ILE GLY GLU TYR CYS ILE GLN ASP SER SEQRES 43 A 1199 LEU LEU VAL GLY GLN LEU PHE PHE LYS PHE LEU PRO HIS SEQRES 44 A 1199 LEU GLU LEU SER ALA VAL ALA ARG LEU ALA GLY ILE ASN SEQRES 45 A 1199 ILE THR ARG THR ILE TYR ASP GLY GLN GLN ILE ARG VAL SEQRES 46 A 1199 PHE THR CYS LEU LEU ARG LEU ALA ASP GLN LYS GLY PHE SEQRES 47 A 1199 ILE LEU PRO ASP THR GLN GLY ARG PHE ARG GLY ALA GLY SEQRES 48 A 1199 GLY GLU ALA PRO LYS ARG PRO ALA ALA ALA ARG GLU ASP SEQRES 49 A 1199 GLU GLU ARG PRO GLU GLU GLU GLY GLU ASP GLU ASP GLU SEQRES 50 A 1199 ARG GLU GLU GLY GLY GLY GLU ARG GLU PRO GLU GLY ALA SEQRES 51 A 1199 ARG GLU THR ALA GLY ARG HIS VAL GLY TYR GLN GLY ALA SEQRES 52 A 1199 ARG VAL LEU ASP PRO THR SER GLY PHE HIS VAL ASN PRO SEQRES 53 A 1199 VAL VAL VAL PHE ASP PHE ALA SER LEU TYR PRO SER ILE SEQRES 54 A 1199 ILE GLN ALA HIS ASN LEU CYS PHE SER THR LEU SER LEU SEQRES 55 A 1199 ARG ALA ASP ALA VAL ALA HIS LEU GLU ALA GLY LYS ASP SEQRES 56 A 1199 TYR LEU GLU ILE GLU VAL GLY GLY ARG ARG LEU PHE PHE SEQRES 57 A 1199 VAL LYS ALA HIS VAL ARG GLU SER LEU LEU SER ILE LEU SEQRES 58 A 1199 LEU ARG ASP TRP LEU ALA MET ARG LYS GLN ILE ARG SER SEQRES 59 A 1199 ARG ILE PRO GLN SER SER PRO GLU GLU ALA VAL LEU LEU SEQRES 60 A 1199 ASP LYS GLN GLN ALA ALA ILE LYS VAL VAL CYS ASN SER SEQRES 61 A 1199 VAL TYR GLY PHE THR GLY VAL GLN HIS GLY LEU LEU PRO SEQRES 62 A 1199 CYS LEU HIS VAL ALA ALA THR VAL THR THR ILE GLY ARG SEQRES 63 A 1199 GLU MET LEU LEU ALA THR ARG GLU TYR VAL HIS ALA ARG SEQRES 64 A 1199 TRP ALA ALA PHE GLU GLN LEU LEU ALA ASP PHE PRO GLU SEQRES 65 A 1199 ALA ALA ASP MET ARG ALA PRO GLY PRO TYR SER MET ARG SEQRES 66 A 1199 ILE ILE TYR GLY ASP THR ASP SER ILE PHE VAL LEU CYS SEQRES 67 A 1199 ARG GLY LEU THR ALA ALA GLY LEU THR ALA MET GLY ASP SEQRES 68 A 1199 LYS MET ALA SER HIS ILE SER ARG ALA LEU PHE LEU PRO SEQRES 69 A 1199 PRO ILE LYS LEU GLU CYS GLU LYS THR PHE THR LYS LEU SEQRES 70 A 1199 LEU LEU ILE ALA LYS LYS LYS TYR ILE GLY VAL ILE TYR SEQRES 71 A 1199 GLY GLY LYS MET LEU ILE LYS GLY VAL ASP LEU VAL ARG SEQRES 72 A 1199 LYS ASN ASN CYS ALA PHE ILE ASN ARG THR SER ARG ALA SEQRES 73 A 1199 LEU VAL ASP LEU LEU PHE TYR ASP ASP THR VAL SER GLY SEQRES 74 A 1199 ALA ALA ALA ALA LEU ALA GLU ARG PRO ALA GLU GLU TRP SEQRES 75 A 1199 LEU ALA ARG PRO LEU PRO GLU GLY LEU GLN ALA PHE GLY SEQRES 76 A 1199 ALA VAL LEU VAL ASP ALA HIS ARG ARG ILE THR ASP PRO SEQRES 77 A 1199 GLU ARG ASP ILE GLN ASP PHE VAL LEU THR ALA GLU LEU SEQRES 78 A 1199 SER ARG HIS PRO ARG ALA TYR THR ASN LYS ARG LEU ALA SEQRES 79 A 1199 HIS LEU THR VAL TYR TYR LYS LEU MET ALA ARG ARG ALA SEQRES 80 A 1199 GLN VAL PRO SER ILE LYS ASP ARG ILE PRO TYR VAL ILE SEQRES 81 A 1199 VAL ALA GLN THR ARG GLU VAL GLU GLU THR VAL ALA ARG SEQRES 82 A 1199 LEU ALA ALA LEU ARG GLU LEU ASP ALA ALA ALA PRO GLY SEQRES 83 A 1199 ASP GLU PRO ALA PRO PRO ALA ALA LEU PRO SER PRO ALA SEQRES 84 A 1199 LYS ARG PRO ARG GLU THR PRO SER HIS ALA ASP PRO PRO SEQRES 85 A 1199 GLY GLY ALA SER LYS PRO ARG LYS LEU LEU VAL SER GLU SEQRES 86 A 1199 LEU ALA GLU ASP PRO ALA TYR ALA ILE ALA HIS GLY VAL SEQRES 87 A 1199 ALA LEU ASN THR ASP TYR TYR PHE SER HIS LEU LEU GLY SEQRES 88 A 1199 ALA ALA CYS VAL THR PHE LYS ALA LEU PHE GLY ASN ASN SEQRES 89 A 1199 ALA LYS ILE THR GLU SER LEU LEU LYS ARG PHE ILE PRO SEQRES 90 A 1199 GLU VAL TRP HIS PRO PRO ASP ASP VAL ALA ALA ARG LEU SEQRES 91 A 1199 ARG ALA ALA GLY PHE GLY ALA VAL GLY ALA GLY ALA THR SEQRES 92 A 1199 ALA GLU GLU THR ARG ARG MET LEU HIS ARG ALA PHE ASP SEQRES 93 A 1199 THR LEU ALA SEQRES 1 B 340 MET THR ASP SER PRO GLY GLY VAL ALA PRO ALA SER PRO SEQRES 2 B 340 VAL GLU ASP ALA SER ASP ALA SER LEU GLY GLN PRO GLU SEQRES 3 B 340 GLU GLY ALA PRO CYS GLN VAL VAL LEU GLN GLY ALA GLU SEQRES 4 B 340 LEU ASN GLY ILE LEU GLN ALA PHE ALA PRO LEU ARG THR SEQRES 5 B 340 SER LEU LEU ASP SER LEU LEU VAL MET GLY ASP ARG GLY SEQRES 6 B 340 ILE LEU ILE HIS ASN THR ILE PHE GLY GLU GLN VAL PHE SEQRES 7 B 340 LEU PRO LEU GLU HIS SER GLN PHE SER ARG TYR ARG TRP SEQRES 8 B 340 ARG GLY PRO THR ALA ALA PHE LEU SER LEU VAL ASP GLN SEQRES 9 B 340 LYS ARG SER LEU LEU SER VAL PHE ARG ALA ASN GLN TYR SEQRES 10 B 340 PRO ASP LEU ARG ARG VAL GLU LEU ALA ILE THR GLY GLN SEQRES 11 B 340 ALA PRO PHE ARG THR LEU VAL GLN ARG ILE TRP THR THR SEQRES 12 B 340 THR SER ASP GLY GLU ALA VAL GLU LEU ALA SER GLU THR SEQRES 13 B 340 LEU MET LYS ARG GLU LEU THR SER PHE VAL VAL LEU VAL SEQRES 14 B 340 PRO GLN GLY THR PRO ASP VAL GLN LEU ARG LEU THR ARG SEQRES 15 B 340 PRO GLN LEU THR LYS VAL LEU ASN ALA THR GLY ALA ASP SEQRES 16 B 340 SER ALA THR PRO THR THR PHE GLU LEU GLY VAL ASN GLY SEQRES 17 B 340 LYS PHE SER VAL PHE THR THR SER THR CYS VAL THR PHE SEQRES 18 B 340 ALA ALA ARG GLU GLU GLY VAL SER SER SER THR SER THR SEQRES 19 B 340 GLN VAL GLN ILE LEU SER ASN ALA LEU THR LYS ALA GLY SEQRES 20 B 340 GLN ALA ALA ALA ASN ALA LYS THR VAL TYR GLY GLU ASN SEQRES 21 B 340 THR HIS ARG THR PHE SER VAL VAL VAL ASP ASP CYS SER SEQRES 22 B 340 MET ARG ALA VAL LEU ARG ARG LEU GLN VAL ALA GLY GLY SEQRES 23 B 340 THR LEU LYS PHE PHE LEU THR THR PRO VAL PRO SER LEU SEQRES 24 B 340 CYS VAL THR ALA THR GLY PRO ASN ALA VAL SER ALA VAL SEQRES 25 B 340 PHE LEU LEU LYS PRO GLN LYS ILE CYS LEU ASP TRP LEU SEQRES 26 B 340 GLY HIS SER GLN GLY SER PRO SER ALA GLY SER SER ALA SEQRES 27 B 340 SER ARG SEQRES 1 P 32 DG DA DT DT DA DC DG DA DA DT DT DC DG SEQRES 2 P 32 DA DG DC DT DC DG DG DT DA DC DC DC DG SEQRES 3 P 32 DG DG DG DA DT DOC SEQRES 1 T 50 DC DA DC DA DC DA DC DA DC DA DC DA DC SEQRES 2 T 50 DA DC DA DC DA DG DA DT DC DC DC DC DG SEQRES 3 T 50 DG DG DT DA DC DC DG DA DG DC DT DC DG SEQRES 4 T 50 DA DA DT DT DC DG DT DA DA DT DC HET DOC P 0 18 HET MG A1301 1 HET MG A1302 1 HET MG A1303 1 HET PPF A1304 7 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PPF PHOSPHONOFORMIC ACID FORMUL 3 DOC C9 H14 N3 O6 P FORMUL 5 MG 3(MG 2+) FORMUL 8 PPF C H3 O5 P HELIX 1 AA1 HIS A 168 ILE A 175 1 8 HELIX 2 AA2 GLU A 210 ARG A 214 5 5 HELIX 3 AA3 LEU A 224 GLU A 234 1 11 HELIX 4 AA4 SER A 244 ASP A 246 5 3 HELIX 5 AA5 ARG A 277 LEU A 282 1 6 HELIX 6 AA6 THR A 300 LEU A 305 1 6 HELIX 7 AA7 ALA A 331 PHE A 335 5 5 HELIX 8 AA8 PRO A 420 ALA A 429 1 10 HELIX 9 AA9 SER A 442 TYR A 457 1 16 HELIX 10 AB1 PHE A 470 TYR A 483 1 14 HELIX 11 AB2 ASP A 524 ILE A 533 1 10 HELIX 12 AB3 LYS A 539 LYS A 549 1 11 HELIX 13 AB4 SER A 556 ARG A 558 5 3 HELIX 14 AB5 ASP A 559 TYR A 564 1 6 HELIX 15 AB6 GLY A 567 LEU A 593 1 27 HELIX 16 AB7 LEU A 593 GLY A 606 1 14 HELIX 17 AB8 ASN A 608 ASP A 615 1 8 HELIX 18 AB9 GLN A 617 ASP A 630 1 14 HELIX 19 AC1 SER A 720 HIS A 729 1 10 HELIX 20 AC2 CYS A 732 LEU A 736 5 5 HELIX 21 AC3 LEU A 773 ARG A 791 1 19 HELIX 22 AC4 ILE A 792 SER A 795 5 4 HELIX 23 AC5 GLU A 799 VAL A 823 1 25 HELIX 24 AC6 CYS A 830 TRP A 856 1 27 HELIX 25 AC7 ALA A 858 ALA A 864 1 7 HELIX 26 AC8 PHE A 866 ASP A 871 5 6 HELIX 27 AC9 GLY A 901 PHE A 918 1 18 HELIX 28 AD1 CYS A 963 TYR A 979 1 17 HELIX 29 AD2 ASP A 981 LEU A 990 1 10 HELIX 30 AD3 PRO A 994 LEU A 999 5 6 HELIX 31 AD4 ALA A 1009 THR A 1022 1 14 HELIX 32 AD5 ASP A 1027 PHE A 1031 5 5 HELIX 33 AD6 LEU A 1049 ARG A 1061 1 13 HELIX 34 AD7 ARG A 1081 ALA A 1091 1 11 HELIX 35 AD8 VAL A 1139 GLU A 1141 5 3 HELIX 36 AD9 ASP A 1145 HIS A 1152 1 8 HELIX 37 AE1 ASP A 1159 LYS A 1174 1 16 HELIX 38 AE2 ALA A 1175 PHE A 1177 5 3 HELIX 39 AE3 ASN A 1180 LYS A 1189 1 10 HELIX 40 AE4 PRO A 1199 ALA A 1209 1 11 HELIX 41 AE5 GLU A 1222 ALA A 1235 1 14 HELIX 42 AE6 GLN B 36 ALA B 48 1 13 HELIX 43 AE7 GLU B 82 PHE B 86 5 5 HELIX 44 AE8 ASP B 103 LYS B 105 5 3 HELIX 45 AE9 LEU B 109 ARG B 113 5 5 HELIX 46 AF1 PRO B 183 THR B 192 1 10 HELIX 47 AF2 SER B 273 GLN B 282 1 10 SHEET 1 AA1 2 PHE A 74 ARG A 75 0 SHEET 2 AA1 2 HIS A 98 LEU A 99 -1 N LEU A 99 O PHE A 74 SHEET 1 AA2 5 GLY A 314 TRP A 315 0 SHEET 2 AA2 5 HIS A 148 ASN A 155 -1 N VAL A 149 O GLY A 314 SHEET 3 AA2 5 VAL A 181 LEU A 187 -1 O VAL A 181 N ASN A 155 SHEET 4 AA2 5 ARG A 193 VAL A 198 -1 O VAL A 196 N LEU A 184 SHEET 5 AA2 5 VAL A 341 PHE A 343 1 O PHE A 343 N HIS A 197 SHEET 1 AA3 4 TYR A 204 ASN A 208 0 SHEET 2 AA3 4 ALA A 266 VAL A 273 -1 O TYR A 269 N MET A 207 SHEET 3 AA3 4 PHE A 248 ASP A 257 -1 N VAL A 253 O PHE A 268 SHEET 4 AA3 4 PHE A 634 ILE A 635 1 O ILE A 635 N THR A 256 SHEET 1 AA4 2 ARG A 317 LEU A 318 0 SHEET 2 AA4 2 LEU A 350 ALA A 351 -1 O ALA A 351 N ARG A 317 SHEET 1 AA5 4 GLU A 370 LYS A 372 0 SHEET 2 AA5 4 LEU A 390 ASP A 400 -1 O LEU A 390 N LYS A 372 SHEET 3 AA5 4 ALA A 405 LEU A 414 -1 O GLU A 407 N LEU A 398 SHEET 4 AA5 4 VAL A 436 PHE A 440 1 O LEU A 438 N SER A 413 SHEET 1 AA6 5 GLU A 370 LYS A 372 0 SHEET 2 AA6 5 LEU A 390 ASP A 400 -1 O LEU A 390 N LYS A 372 SHEET 3 AA6 5 MET A 365 PHE A 367 -1 N CYS A 366 O LEU A 397 SHEET 4 AA6 5 PHE A 461 THR A 463 1 O PHE A 461 N MET A 365 SHEET 5 AA6 5 VAL A 521 ASN A 522 1 O VAL A 521 N VAL A 462 SHEET 1 AA7 2 PHE A 499 TRP A 502 0 SHEET 2 AA7 2 LYS A 514 VAL A 517 -1 O LYS A 514 N TRP A 502 SHEET 1 AA8 5 PHE A 708 HIS A 709 0 SHEET 2 AA8 5 LEU A 924 ALA A 937 -1 O LEU A 933 N HIS A 709 SHEET 3 AA8 5 VAL A 713 PHE A 718 -1 N ASP A 717 O GLU A 925 SHEET 4 AA8 5 ILE A 890 ARG A 895 -1 O VAL A 892 N VAL A 714 SHEET 5 AA8 5 SER A 879 ILE A 882 -1 N SER A 879 O ARG A 895 SHEET 1 AA9 4 PHE A 708 HIS A 709 0 SHEET 2 AA9 4 LEU A 924 ALA A 937 -1 O LEU A 933 N HIS A 709 SHEET 3 AA9 4 LYS A 940 ILE A 945 -1 O ILE A 942 N LEU A 934 SHEET 4 AA9 4 MET A 950 LYS A 953 -1 O LEU A 951 N GLY A 943 SHEET 1 AB1 2 TYR A 752 ILE A 755 0 SHEET 2 AB1 2 LEU A 762 VAL A 765 -1 O PHE A 764 N LEU A 753 SHEET 1 AB2 3 LEU A1033 GLU A1036 0 SHEET 2 AB2 3 ARG A1071 ILE A1076 -1 O ILE A1072 N ALA A1035 SHEET 3 AB2 3 ALA A1143 GLU A1144 -1 O GLU A1144 N VAL A1075 SHEET 1 AB3 2 GLY A1212 VAL A1214 0 SHEET 2 AB3 2 VAL B 167 VAL B 169 -1 O VAL B 169 N GLY A1212 SHEET 1 AB4 5 ARG B 88 TYR B 89 0 SHEET 2 AB4 5 CYS B 31 LEU B 35 -1 N VAL B 34 O ARG B 88 SHEET 3 AB4 5 LEU B 120 ILE B 127 -1 O LEU B 125 N VAL B 33 SHEET 4 AB4 5 THR B 135 THR B 144 -1 O VAL B 137 N ALA B 126 SHEET 5 AB4 5 GLU B 148 GLU B 151 -1 O VAL B 150 N THR B 142 SHEET 1 AB5 5 ARG B 88 TYR B 89 0 SHEET 2 AB5 5 CYS B 31 LEU B 35 -1 N VAL B 34 O ARG B 88 SHEET 3 AB5 5 LEU B 120 ILE B 127 -1 O LEU B 125 N VAL B 33 SHEET 4 AB5 5 THR B 135 THR B 144 -1 O VAL B 137 N ALA B 126 SHEET 5 AB5 5 LEU B 157 ARG B 160 -1 O LYS B 159 N LEU B 136 SHEET 1 AB6 7 ALA B 96 PHE B 98 0 SHEET 2 AB6 7 LEU B 58 GLY B 62 -1 N MET B 61 O ALA B 96 SHEET 3 AB6 7 GLY B 65 THR B 71 -1 O LEU B 67 N VAL B 60 SHEET 4 AB6 7 GLN B 76 PRO B 80 -1 O VAL B 77 N ASN B 70 SHEET 5 AB6 7 SER B 310 LEU B 314 -1 O SER B 310 N PHE B 78 SHEET 6 AB6 7 SER B 298 ALA B 303 -1 N LEU B 299 O PHE B 313 SHEET 7 AB6 7 GLY B 286 PHE B 291 -1 N PHE B 291 O SER B 298 SHEET 1 AB7 2 LEU B 101 VAL B 102 0 SHEET 2 AB7 2 ARG B 106 SER B 107 -1 O ARG B 106 N VAL B 102 SHEET 1 AB8 3 GLN B 177 ARG B 179 0 SHEET 2 AB8 3 THR B 255 GLU B 259 -1 O TYR B 257 N ARG B 179 SHEET 3 AB8 3 ALA B 222 ARG B 224 1 N ALA B 222 O VAL B 256 SHEET 1 AB9 3 SER B 211 PHE B 213 0 SHEET 2 AB9 3 THR B 200 LEU B 204 -1 N GLU B 203 O SER B 211 SHEET 3 AB9 3 PHE B 265 VAL B 269 -1 O VAL B 267 N PHE B 202 LINK O3' DT P -1 P DOC P 0 1555 1555 1.61 LINK OD1 ASP A 471 MG MG A1303 1555 1555 2.89 LINK OD1 ASP A 717 MG MG A1301 1555 1555 2.77 LINK O PHE A 718 MG MG A1301 1555 1555 3.00 LINK OD2 ASP A 888 MG MG A1301 1555 1555 2.14 LINK MG MG A1301 O1 PPF A1304 1555 1555 2.33 LINK MG MG A1301 O4 PPF A1304 1555 1555 2.43 LINK MG MG A1301 O5' DOC P 0 1555 1555 2.92 LINK MG MG A1301 OP1 DOC P 0 1555 1555 2.28 LINK MG MG A1302 O1 PPF A1304 1555 1555 2.93 LINK MG MG A1302 O2 PPF A1304 1555 1555 2.57 LINK MG MG A1302 O3 PPF A1304 1555 1555 2.52 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000