data_8EZE # _entry.id 8EZE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.367 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8EZE pdb_00008eze 10.2210/pdb8eze/pdb WWPDB D_1000269638 ? ? EMDB EMD-28741 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-28740 'other EM volume' EMDB 'Brain-derived 42-residue amyloid-beta fibril type B' EMD-28741 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8EZE _pdbx_database_status.recvd_initial_deposition_date 2022-10-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tycko, R.' 1 ? 'Lee, M.' 2 ? 'Yau, Y.-M.' 3 ? 'Louis, J.M.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 120 _citation.language ? _citation.page_first e2218831120 _citation.page_last e2218831120 _citation.title ;Structures of brain-derived 42-residue amyloid-beta fibril polymorphs with unusual molecular conformations and intermolecular interactions. ; _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2218831120 _citation.pdbx_database_id_PubMed 36893281 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, M.' 1 ? primary 'Yau, W.M.' 2 ? primary 'Louis, J.M.' 3 0000-0002-0052-1899 primary 'Tycko, R.' 4 0000-0001-7039-7275 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8EZE _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8EZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Beta-amyloid protein 42' _entity.formula_weight 4520.087 _entity.pdbx_number_of_molecules 8 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'residues 672-713' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Amyloid beta A4 protein, ABPP,APPI,APP,Alzheimer disease amyloid protein,Amyloid precursor protein,Beta-amyloid precursor protein,Cerebral vascular amyloid peptide,CVAP,PreA4,Protease nexin-II,PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _entity_poly.pdbx_seq_one_letter_code_can DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 GLU n 1 4 PHE n 1 5 ARG n 1 6 HIS n 1 7 ASP n 1 8 SER n 1 9 GLY n 1 10 TYR n 1 11 GLU n 1 12 VAL n 1 13 HIS n 1 14 HIS n 1 15 GLN n 1 16 LYS n 1 17 LEU n 1 18 VAL n 1 19 PHE n 1 20 PHE n 1 21 ALA n 1 22 GLU n 1 23 ASP n 1 24 VAL n 1 25 GLY n 1 26 SER n 1 27 ASN n 1 28 LYS n 1 29 GLY n 1 30 ALA n 1 31 ILE n 1 32 ILE n 1 33 GLY n 1 34 LEU n 1 35 MET n 1 36 VAL n 1 37 GLY n 1 38 GLY n 1 39 VAL n 1 40 VAL n 1 41 ILE n 1 42 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 42 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'APP, A4, AD1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA _struct_ref.pdbx_align_begin 672 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8EZE A 1 ? 42 ? P05067 672 ? 713 ? 1 42 2 1 8EZE B 1 ? 42 ? P05067 672 ? 713 ? 1 42 3 1 8EZE C 1 ? 42 ? P05067 672 ? 713 ? 1 42 4 1 8EZE D 1 ? 42 ? P05067 672 ? 713 ? 1 42 5 1 8EZE E 1 ? 42 ? P05067 672 ? 713 ? 1 42 6 1 8EZE F 1 ? 42 ? P05067 672 ? 713 ? 1 42 7 1 8EZE G 1 ? 42 ? P05067 672 ? 713 ? 1 42 8 1 8EZE H 1 ? 42 ? P05067 672 ? 713 ? 1 42 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8EZE _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8EZE _struct.title 'Brain-derived 42-residue amyloid-beta fibril type B' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8EZE _struct_keywords.text 'amyloid-b 42 (Ab42) fibril, Alzheimer's disease (AD), Polymorphism., PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 10 ? PHE A 19 ? TYR A 10 PHE A 19 AA1 2 TYR B 10 ? PHE B 19 ? TYR B 10 PHE B 19 AA1 3 TYR C 10 ? PHE C 19 ? TYR C 10 PHE C 19 AA1 4 TYR D 10 ? PHE D 19 ? TYR D 10 PHE D 19 AA2 1 ASN A 27 ? LYS A 28 ? ASN A 27 LYS A 28 AA2 2 ASN B 27 ? LYS B 28 ? ASN B 27 LYS B 28 AA2 3 ASN C 27 ? LYS C 28 ? ASN C 27 LYS C 28 AA2 4 ASN D 27 ? LYS D 28 ? ASN D 27 LYS D 28 AA3 1 ILE A 31 ? VAL A 36 ? ILE A 31 VAL A 36 AA3 2 ILE B 31 ? VAL B 36 ? ILE B 31 VAL B 36 AA3 3 ILE C 31 ? VAL C 36 ? ILE C 31 VAL C 36 AA3 4 ILE D 31 ? VAL D 36 ? ILE D 31 VAL D 36 AA4 1 TYR E 10 ? PHE E 19 ? TYR E 10 PHE E 19 AA4 2 TYR F 10 ? PHE F 19 ? TYR F 10 PHE F 19 AA4 3 TYR G 10 ? PHE G 19 ? TYR G 10 PHE G 19 AA4 4 TYR H 10 ? PHE H 19 ? TYR H 10 PHE H 19 AA5 1 ASN E 27 ? LYS E 28 ? ASN E 27 LYS E 28 AA5 2 ASN F 27 ? LYS F 28 ? ASN F 27 LYS F 28 AA5 3 ASN G 27 ? LYS G 28 ? ASN G 27 LYS G 28 AA5 4 ASN H 27 ? LYS H 28 ? ASN H 27 LYS H 28 AA6 1 ILE E 31 ? VAL E 36 ? ILE E 31 VAL E 36 AA6 2 ILE F 31 ? VAL F 36 ? ILE F 31 VAL F 36 AA6 3 ILE G 31 ? VAL G 36 ? ILE G 31 VAL G 36 AA6 4 ILE H 31 ? VAL H 36 ? ILE H 31 VAL H 36 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 18 ? N VAL A 18 O LEU B 17 ? O LEU B 17 AA1 2 3 N VAL B 18 ? N VAL B 18 O LEU C 17 ? O LEU C 17 AA1 3 4 N VAL C 18 ? N VAL C 18 O LEU D 17 ? O LEU D 17 AA2 1 2 N ASN A 27 ? N ASN A 27 O LYS B 28 ? O LYS B 28 AA2 2 3 N ASN B 27 ? N ASN B 27 O LYS C 28 ? O LYS C 28 AA2 3 4 N ASN C 27 ? N ASN C 27 O LYS D 28 ? O LYS D 28 AA3 1 2 N ILE A 32 ? N ILE A 32 O GLY B 33 ? O GLY B 33 AA3 2 3 N ILE B 32 ? N ILE B 32 O GLY C 33 ? O GLY C 33 AA3 3 4 N ILE C 32 ? N ILE C 32 O GLY D 33 ? O GLY D 33 AA4 1 2 N VAL E 18 ? N VAL E 18 O LEU F 17 ? O LEU F 17 AA4 2 3 N VAL F 18 ? N VAL F 18 O LEU G 17 ? O LEU G 17 AA4 3 4 N VAL G 18 ? N VAL G 18 O LEU H 17 ? O LEU H 17 AA5 1 2 N ASN E 27 ? N ASN E 27 O LYS F 28 ? O LYS F 28 AA5 2 3 N ASN F 27 ? N ASN F 27 O LYS G 28 ? O LYS G 28 AA5 3 4 N ASN G 27 ? N ASN G 27 O LYS H 28 ? O LYS H 28 AA6 1 2 N ILE E 32 ? N ILE E 32 O GLY F 33 ? O GLY F 33 AA6 2 3 N ILE F 32 ? N ILE F 32 O GLY G 33 ? O GLY G 33 AA6 3 4 N ILE G 32 ? N ILE G 32 O GLY H 33 ? O GLY H 33 # _atom_sites.entry_id 8EZE _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 HIS 13 13 13 HIS HIS A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 ALA 42 42 42 ALA ALA A . n B 1 1 ASP 1 1 1 ASP ASP B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 ARG 5 5 5 ARG ARG B . n B 1 6 HIS 6 6 6 HIS HIS B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 SER 8 8 8 SER SER B . n B 1 9 GLY 9 9 9 GLY GLY B . n B 1 10 TYR 10 10 10 TYR TYR B . n B 1 11 GLU 11 11 11 GLU GLU B . n B 1 12 VAL 12 12 12 VAL VAL B . n B 1 13 HIS 13 13 13 HIS HIS B . n B 1 14 HIS 14 14 14 HIS HIS B . n B 1 15 GLN 15 15 15 GLN GLN B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 VAL 18 18 18 VAL VAL B . n B 1 19 PHE 19 19 19 PHE PHE B . n B 1 20 PHE 20 20 20 PHE PHE B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 ASP 23 23 23 ASP ASP B . n B 1 24 VAL 24 24 24 VAL VAL B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 SER 26 26 26 SER SER B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 GLY 29 29 29 GLY GLY B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 ILE 31 31 31 ILE ILE B . n B 1 32 ILE 32 32 32 ILE ILE B . n B 1 33 GLY 33 33 33 GLY GLY B . n B 1 34 LEU 34 34 34 LEU LEU B . n B 1 35 MET 35 35 35 MET MET B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 VAL 39 39 39 VAL VAL B . n B 1 40 VAL 40 40 40 VAL VAL B . n B 1 41 ILE 41 41 41 ILE ILE B . n B 1 42 ALA 42 42 42 ALA ALA B . n C 1 1 ASP 1 1 1 ASP ASP C . n C 1 2 ALA 2 2 2 ALA ALA C . n C 1 3 GLU 3 3 3 GLU GLU C . n C 1 4 PHE 4 4 4 PHE PHE C . n C 1 5 ARG 5 5 5 ARG ARG C . n C 1 6 HIS 6 6 6 HIS HIS C . n C 1 7 ASP 7 7 7 ASP ASP C . n C 1 8 SER 8 8 8 SER SER C . n C 1 9 GLY 9 9 9 GLY GLY C . n C 1 10 TYR 10 10 10 TYR TYR C . n C 1 11 GLU 11 11 11 GLU GLU C . n C 1 12 VAL 12 12 12 VAL VAL C . n C 1 13 HIS 13 13 13 HIS HIS C . n C 1 14 HIS 14 14 14 HIS HIS C . n C 1 15 GLN 15 15 15 GLN GLN C . n C 1 16 LYS 16 16 16 LYS LYS C . n C 1 17 LEU 17 17 17 LEU LEU C . n C 1 18 VAL 18 18 18 VAL VAL C . n C 1 19 PHE 19 19 19 PHE PHE C . n C 1 20 PHE 20 20 20 PHE PHE C . n C 1 21 ALA 21 21 21 ALA ALA C . n C 1 22 GLU 22 22 22 GLU GLU C . n C 1 23 ASP 23 23 23 ASP ASP C . n C 1 24 VAL 24 24 24 VAL VAL C . n C 1 25 GLY 25 25 25 GLY GLY C . n C 1 26 SER 26 26 26 SER SER C . n C 1 27 ASN 27 27 27 ASN ASN C . n C 1 28 LYS 28 28 28 LYS LYS C . n C 1 29 GLY 29 29 29 GLY GLY C . n C 1 30 ALA 30 30 30 ALA ALA C . n C 1 31 ILE 31 31 31 ILE ILE C . n C 1 32 ILE 32 32 32 ILE ILE C . n C 1 33 GLY 33 33 33 GLY GLY C . n C 1 34 LEU 34 34 34 LEU LEU C . n C 1 35 MET 35 35 35 MET MET C . n C 1 36 VAL 36 36 36 VAL VAL C . n C 1 37 GLY 37 37 37 GLY GLY C . n C 1 38 GLY 38 38 38 GLY GLY C . n C 1 39 VAL 39 39 39 VAL VAL C . n C 1 40 VAL 40 40 40 VAL VAL C . n C 1 41 ILE 41 41 41 ILE ILE C . n C 1 42 ALA 42 42 42 ALA ALA C . n D 1 1 ASP 1 1 1 ASP ASP D . n D 1 2 ALA 2 2 2 ALA ALA D . n D 1 3 GLU 3 3 3 GLU GLU D . n D 1 4 PHE 4 4 4 PHE PHE D . n D 1 5 ARG 5 5 5 ARG ARG D . n D 1 6 HIS 6 6 6 HIS HIS D . n D 1 7 ASP 7 7 7 ASP ASP D . n D 1 8 SER 8 8 8 SER SER D . n D 1 9 GLY 9 9 9 GLY GLY D . n D 1 10 TYR 10 10 10 TYR TYR D . n D 1 11 GLU 11 11 11 GLU GLU D . n D 1 12 VAL 12 12 12 VAL VAL D . n D 1 13 HIS 13 13 13 HIS HIS D . n D 1 14 HIS 14 14 14 HIS HIS D . n D 1 15 GLN 15 15 15 GLN GLN D . n D 1 16 LYS 16 16 16 LYS LYS D . n D 1 17 LEU 17 17 17 LEU LEU D . n D 1 18 VAL 18 18 18 VAL VAL D . n D 1 19 PHE 19 19 19 PHE PHE D . n D 1 20 PHE 20 20 20 PHE PHE D . n D 1 21 ALA 21 21 21 ALA ALA D . n D 1 22 GLU 22 22 22 GLU GLU D . n D 1 23 ASP 23 23 23 ASP ASP D . n D 1 24 VAL 24 24 24 VAL VAL D . n D 1 25 GLY 25 25 25 GLY GLY D . n D 1 26 SER 26 26 26 SER SER D . n D 1 27 ASN 27 27 27 ASN ASN D . n D 1 28 LYS 28 28 28 LYS LYS D . n D 1 29 GLY 29 29 29 GLY GLY D . n D 1 30 ALA 30 30 30 ALA ALA D . n D 1 31 ILE 31 31 31 ILE ILE D . n D 1 32 ILE 32 32 32 ILE ILE D . n D 1 33 GLY 33 33 33 GLY GLY D . n D 1 34 LEU 34 34 34 LEU LEU D . n D 1 35 MET 35 35 35 MET MET D . n D 1 36 VAL 36 36 36 VAL VAL D . n D 1 37 GLY 37 37 37 GLY GLY D . n D 1 38 GLY 38 38 38 GLY GLY D . n D 1 39 VAL 39 39 39 VAL VAL D . n D 1 40 VAL 40 40 40 VAL VAL D . n D 1 41 ILE 41 41 41 ILE ILE D . n D 1 42 ALA 42 42 42 ALA ALA D . n E 1 1 ASP 1 1 1 ASP ASP E . n E 1 2 ALA 2 2 2 ALA ALA E . n E 1 3 GLU 3 3 3 GLU GLU E . n E 1 4 PHE 4 4 4 PHE PHE E . n E 1 5 ARG 5 5 5 ARG ARG E . n E 1 6 HIS 6 6 6 HIS HIS E . n E 1 7 ASP 7 7 7 ASP ASP E . n E 1 8 SER 8 8 8 SER SER E . n E 1 9 GLY 9 9 9 GLY GLY E . n E 1 10 TYR 10 10 10 TYR TYR E . n E 1 11 GLU 11 11 11 GLU GLU E . n E 1 12 VAL 12 12 12 VAL VAL E . n E 1 13 HIS 13 13 13 HIS HIS E . n E 1 14 HIS 14 14 14 HIS HIS E . n E 1 15 GLN 15 15 15 GLN GLN E . n E 1 16 LYS 16 16 16 LYS LYS E . n E 1 17 LEU 17 17 17 LEU LEU E . n E 1 18 VAL 18 18 18 VAL VAL E . n E 1 19 PHE 19 19 19 PHE PHE E . n E 1 20 PHE 20 20 20 PHE PHE E . n E 1 21 ALA 21 21 21 ALA ALA E . n E 1 22 GLU 22 22 22 GLU GLU E . n E 1 23 ASP 23 23 23 ASP ASP E . n E 1 24 VAL 24 24 24 VAL VAL E . n E 1 25 GLY 25 25 25 GLY GLY E . n E 1 26 SER 26 26 26 SER SER E . n E 1 27 ASN 27 27 27 ASN ASN E . n E 1 28 LYS 28 28 28 LYS LYS E . n E 1 29 GLY 29 29 29 GLY GLY E . n E 1 30 ALA 30 30 30 ALA ALA E . n E 1 31 ILE 31 31 31 ILE ILE E . n E 1 32 ILE 32 32 32 ILE ILE E . n E 1 33 GLY 33 33 33 GLY GLY E . n E 1 34 LEU 34 34 34 LEU LEU E . n E 1 35 MET 35 35 35 MET MET E . n E 1 36 VAL 36 36 36 VAL VAL E . n E 1 37 GLY 37 37 37 GLY GLY E . n E 1 38 GLY 38 38 38 GLY GLY E . n E 1 39 VAL 39 39 39 VAL VAL E . n E 1 40 VAL 40 40 40 VAL VAL E . n E 1 41 ILE 41 41 41 ILE ILE E . n E 1 42 ALA 42 42 42 ALA ALA E . n F 1 1 ASP 1 1 1 ASP ASP F . n F 1 2 ALA 2 2 2 ALA ALA F . n F 1 3 GLU 3 3 3 GLU GLU F . n F 1 4 PHE 4 4 4 PHE PHE F . n F 1 5 ARG 5 5 5 ARG ARG F . n F 1 6 HIS 6 6 6 HIS HIS F . n F 1 7 ASP 7 7 7 ASP ASP F . n F 1 8 SER 8 8 8 SER SER F . n F 1 9 GLY 9 9 9 GLY GLY F . n F 1 10 TYR 10 10 10 TYR TYR F . n F 1 11 GLU 11 11 11 GLU GLU F . n F 1 12 VAL 12 12 12 VAL VAL F . n F 1 13 HIS 13 13 13 HIS HIS F . n F 1 14 HIS 14 14 14 HIS HIS F . n F 1 15 GLN 15 15 15 GLN GLN F . n F 1 16 LYS 16 16 16 LYS LYS F . n F 1 17 LEU 17 17 17 LEU LEU F . n F 1 18 VAL 18 18 18 VAL VAL F . n F 1 19 PHE 19 19 19 PHE PHE F . n F 1 20 PHE 20 20 20 PHE PHE F . n F 1 21 ALA 21 21 21 ALA ALA F . n F 1 22 GLU 22 22 22 GLU GLU F . n F 1 23 ASP 23 23 23 ASP ASP F . n F 1 24 VAL 24 24 24 VAL VAL F . n F 1 25 GLY 25 25 25 GLY GLY F . n F 1 26 SER 26 26 26 SER SER F . n F 1 27 ASN 27 27 27 ASN ASN F . n F 1 28 LYS 28 28 28 LYS LYS F . n F 1 29 GLY 29 29 29 GLY GLY F . n F 1 30 ALA 30 30 30 ALA ALA F . n F 1 31 ILE 31 31 31 ILE ILE F . n F 1 32 ILE 32 32 32 ILE ILE F . n F 1 33 GLY 33 33 33 GLY GLY F . n F 1 34 LEU 34 34 34 LEU LEU F . n F 1 35 MET 35 35 35 MET MET F . n F 1 36 VAL 36 36 36 VAL VAL F . n F 1 37 GLY 37 37 37 GLY GLY F . n F 1 38 GLY 38 38 38 GLY GLY F . n F 1 39 VAL 39 39 39 VAL VAL F . n F 1 40 VAL 40 40 40 VAL VAL F . n F 1 41 ILE 41 41 41 ILE ILE F . n F 1 42 ALA 42 42 42 ALA ALA F . n G 1 1 ASP 1 1 1 ASP ASP G . n G 1 2 ALA 2 2 2 ALA ALA G . n G 1 3 GLU 3 3 3 GLU GLU G . n G 1 4 PHE 4 4 4 PHE PHE G . n G 1 5 ARG 5 5 5 ARG ARG G . n G 1 6 HIS 6 6 6 HIS HIS G . n G 1 7 ASP 7 7 7 ASP ASP G . n G 1 8 SER 8 8 8 SER SER G . n G 1 9 GLY 9 9 9 GLY GLY G . n G 1 10 TYR 10 10 10 TYR TYR G . n G 1 11 GLU 11 11 11 GLU GLU G . n G 1 12 VAL 12 12 12 VAL VAL G . n G 1 13 HIS 13 13 13 HIS HIS G . n G 1 14 HIS 14 14 14 HIS HIS G . n G 1 15 GLN 15 15 15 GLN GLN G . n G 1 16 LYS 16 16 16 LYS LYS G . n G 1 17 LEU 17 17 17 LEU LEU G . n G 1 18 VAL 18 18 18 VAL VAL G . n G 1 19 PHE 19 19 19 PHE PHE G . n G 1 20 PHE 20 20 20 PHE PHE G . n G 1 21 ALA 21 21 21 ALA ALA G . n G 1 22 GLU 22 22 22 GLU GLU G . n G 1 23 ASP 23 23 23 ASP ASP G . n G 1 24 VAL 24 24 24 VAL VAL G . n G 1 25 GLY 25 25 25 GLY GLY G . n G 1 26 SER 26 26 26 SER SER G . n G 1 27 ASN 27 27 27 ASN ASN G . n G 1 28 LYS 28 28 28 LYS LYS G . n G 1 29 GLY 29 29 29 GLY GLY G . n G 1 30 ALA 30 30 30 ALA ALA G . n G 1 31 ILE 31 31 31 ILE ILE G . n G 1 32 ILE 32 32 32 ILE ILE G . n G 1 33 GLY 33 33 33 GLY GLY G . n G 1 34 LEU 34 34 34 LEU LEU G . n G 1 35 MET 35 35 35 MET MET G . n G 1 36 VAL 36 36 36 VAL VAL G . n G 1 37 GLY 37 37 37 GLY GLY G . n G 1 38 GLY 38 38 38 GLY GLY G . n G 1 39 VAL 39 39 39 VAL VAL G . n G 1 40 VAL 40 40 40 VAL VAL G . n G 1 41 ILE 41 41 41 ILE ILE G . n G 1 42 ALA 42 42 42 ALA ALA G . n H 1 1 ASP 1 1 1 ASP ASP H . n H 1 2 ALA 2 2 2 ALA ALA H . n H 1 3 GLU 3 3 3 GLU GLU H . n H 1 4 PHE 4 4 4 PHE PHE H . n H 1 5 ARG 5 5 5 ARG ARG H . n H 1 6 HIS 6 6 6 HIS HIS H . n H 1 7 ASP 7 7 7 ASP ASP H . n H 1 8 SER 8 8 8 SER SER H . n H 1 9 GLY 9 9 9 GLY GLY H . n H 1 10 TYR 10 10 10 TYR TYR H . n H 1 11 GLU 11 11 11 GLU GLU H . n H 1 12 VAL 12 12 12 VAL VAL H . n H 1 13 HIS 13 13 13 HIS HIS H . n H 1 14 HIS 14 14 14 HIS HIS H . n H 1 15 GLN 15 15 15 GLN GLN H . n H 1 16 LYS 16 16 16 LYS LYS H . n H 1 17 LEU 17 17 17 LEU LEU H . n H 1 18 VAL 18 18 18 VAL VAL H . n H 1 19 PHE 19 19 19 PHE PHE H . n H 1 20 PHE 20 20 20 PHE PHE H . n H 1 21 ALA 21 21 21 ALA ALA H . n H 1 22 GLU 22 22 22 GLU GLU H . n H 1 23 ASP 23 23 23 ASP ASP H . n H 1 24 VAL 24 24 24 VAL VAL H . n H 1 25 GLY 25 25 25 GLY GLY H . n H 1 26 SER 26 26 26 SER SER H . n H 1 27 ASN 27 27 27 ASN ASN H . n H 1 28 LYS 28 28 28 LYS LYS H . n H 1 29 GLY 29 29 29 GLY GLY H . n H 1 30 ALA 30 30 30 ALA ALA H . n H 1 31 ILE 31 31 31 ILE ILE H . n H 1 32 ILE 32 32 32 ILE ILE H . n H 1 33 GLY 33 33 33 GLY GLY H . n H 1 34 LEU 34 34 34 LEU LEU H . n H 1 35 MET 35 35 35 MET MET H . n H 1 36 VAL 36 36 36 VAL VAL H . n H 1 37 GLY 37 37 37 GLY GLY H . n H 1 38 GLY 38 38 38 GLY GLY H . n H 1 39 VAL 39 39 39 VAL VAL H . n H 1 40 VAL 40 40 40 VAL VAL H . n H 1 41 ILE 41 41 41 ILE ILE H . n H 1 42 ALA 42 42 42 ALA ALA H . n # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 robertty@mail.nih.gov Robert Tycko ? 'principal investigator/group leader' 0000-0001-7039-7275 3 leemwcloud@gmail.com Myungwoon Lee ? 'principal investigator/group leader' 0000-0001-9230-0446 4 waimingy@niddk.nih.gov Wai-Ming Yau ? 'principal investigator/group leader' 0000-0002-7668-7780 5 johnl@niddk.nih.gov John Louis M 'principal investigator/group leader' 0000-0002-0052-1899 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-03-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8EZE _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ;Manually generated model was fit into the density using PHENIX and UCSF Chimera. Further refinements were performed using Xplor-NIH. ; _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol OTHER # _em_3d_reconstruction.entry_id 8EZE _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details '3D refinement and post-processing were performed with 21 (screw) symmetry' _em_3d_reconstruction.resolution 2.76 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 92019 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '10mM Na-phosphate, 0.1% sodium azide' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'amyloid-b 42 (Ab42) fibril' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 8EZE _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 8184 _em_image_scans.dimension_width 11520 _em_image_scans.frames_per_image 22 _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 8EZE _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details 'The grid was glow discharged immediately before use.' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8EZE _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 99 _em_vitrification.temp ? _em_vitrification.chamber_temperature 93 _em_vitrification.instrument 'FEI VITROBOT MARK I' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'Preblot for 12-13 seconds and blot for 2.5-3.0 seconds before plunging' # _em_experiment.entry_id 8EZE _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 3 ? ? 58.01 75.93 2 1 PHE A 4 ? ? 71.35 73.67 3 1 ILE A 41 ? ? 41.24 88.14 4 1 GLU B 3 ? ? 58.18 75.87 5 1 PHE B 4 ? ? 71.31 73.72 6 1 ILE B 41 ? ? 41.71 87.90 7 1 GLU C 3 ? ? 58.47 75.68 8 1 PHE C 4 ? ? 71.36 73.76 9 1 ILE C 41 ? ? 41.63 87.87 10 1 GLU D 3 ? ? 58.05 75.70 11 1 PHE D 4 ? ? 71.39 73.68 12 1 ILE D 41 ? ? 41.13 88.02 13 1 GLU E 3 ? ? 57.99 76.00 14 1 PHE E 4 ? ? 71.27 73.68 15 1 ILE E 41 ? ? 41.45 87.91 16 1 GLU F 3 ? ? 58.56 75.78 17 1 PHE F 4 ? ? 71.25 73.70 18 1 ILE F 41 ? ? 42.28 87.68 19 1 GLU G 3 ? ? 58.43 75.74 20 1 PHE G 4 ? ? 71.39 73.75 21 1 ILE G 41 ? ? 41.86 87.90 22 1 GLU H 3 ? ? 57.92 75.78 23 1 PHE H 4 ? ? 71.39 73.67 24 1 ILE H 41 ? ? 40.97 88.02 25 2 GLU A 22 ? ? 49.69 -172.17 26 2 ASP A 23 ? ? 42.48 -151.95 27 2 VAL A 24 ? ? 65.17 85.26 28 2 ILE A 31 ? ? 59.57 93.22 29 2 LEU A 34 ? ? 40.06 84.48 30 2 ILE A 41 ? ? 55.59 105.27 31 2 GLU B 22 ? ? 49.74 -172.41 32 2 ASP B 23 ? ? 42.67 -151.86 33 2 VAL B 24 ? ? 65.15 85.40 34 2 ILE B 31 ? ? 59.73 92.74 35 2 LEU B 34 ? ? 40.01 84.52 36 2 ILE B 41 ? ? 56.00 104.41 37 2 GLU C 22 ? ? 49.75 -172.56 38 2 ASP C 23 ? ? 42.71 -151.91 39 2 VAL C 24 ? ? 65.35 84.85 40 2 ILE C 31 ? ? 59.66 92.57 41 2 LEU C 34 ? ? 40.18 84.34 42 2 ILE C 41 ? ? 56.16 104.09 43 2 GLU D 22 ? ? 49.96 -172.64 44 2 ASP D 23 ? ? 42.96 -151.59 45 2 VAL D 24 ? ? 64.65 86.92 46 2 ILE D 31 ? ? 59.46 92.78 47 2 LEU D 34 ? ? 39.97 84.47 48 2 ILE D 41 ? ? 56.05 104.28 49 2 GLU E 22 ? ? 49.72 -172.17 50 2 ASP E 23 ? ? 42.43 -151.86 51 2 VAL E 24 ? ? 65.16 85.13 52 2 ILE E 31 ? ? 59.56 93.30 53 2 LEU E 34 ? ? 40.20 84.55 54 2 ILE E 41 ? ? 55.59 105.36 55 2 GLU F 22 ? ? 49.73 -172.36 56 2 ASP F 23 ? ? 42.59 -151.80 57 2 VAL F 24 ? ? 65.20 85.01 58 2 ILE F 31 ? ? 59.79 92.71 59 2 LEU F 34 ? ? 39.91 84.51 60 2 ILE F 41 ? ? 56.13 104.20 61 2 GLU G 22 ? ? 49.70 -172.52 62 2 ASP G 23 ? ? 42.69 -151.91 63 2 VAL G 24 ? ? 65.37 84.92 64 2 ILE G 31 ? ? 59.78 92.65 65 2 LEU G 34 ? ? 40.02 84.60 66 2 ILE G 41 ? ? 56.09 104.08 67 2 GLU H 22 ? ? 49.95 -172.61 68 2 ASP H 23 ? ? 42.83 -151.60 69 2 VAL H 24 ? ? 64.60 86.99 70 2 ILE H 31 ? ? 59.43 92.79 71 2 LEU H 34 ? ? 40.05 84.37 72 2 ILE H 41 ? ? 56.09 104.31 73 3 SER A 8 ? ? -143.35 16.54 74 3 TYR A 10 ? ? 77.23 96.02 75 3 SER B 8 ? ? -143.41 16.71 76 3 TYR B 10 ? ? 77.26 95.70 77 3 SER C 8 ? ? -143.46 16.66 78 3 TYR C 10 ? ? 77.23 95.47 79 3 SER D 8 ? ? -143.38 16.65 80 3 TYR D 10 ? ? 76.96 95.93 81 3 SER E 8 ? ? -143.40 16.68 82 3 TYR E 10 ? ? 77.20 96.02 83 3 SER F 8 ? ? -143.51 16.70 84 3 TYR F 10 ? ? 77.15 95.48 85 3 SER G 8 ? ? -143.48 16.57 86 3 TYR G 10 ? ? 77.23 95.44 87 3 SER H 8 ? ? -143.43 16.66 88 3 TYR H 10 ? ? 76.91 95.98 89 4 ARG A 5 ? ? 45.29 80.07 90 4 TYR A 10 ? ? 76.12 95.65 91 4 HIS A 13 ? ? 52.01 76.51 92 4 ALA A 21 ? ? -109.88 -81.40 93 4 ILE A 31 ? ? 54.51 85.67 94 4 ARG B 5 ? ? 45.19 80.41 95 4 TYR B 10 ? ? 76.16 95.52 96 4 HIS B 13 ? ? 52.21 76.64 97 4 ALA B 21 ? ? -110.11 -80.98 98 4 ILE B 31 ? ? 54.12 86.19 99 4 ARG C 5 ? ? 45.29 80.56 100 4 TYR C 10 ? ? 76.23 95.29 101 4 HIS C 13 ? ? 52.58 76.64 102 4 ALA C 21 ? ? -109.95 -81.53 103 4 ILE C 31 ? ? 53.98 86.21 104 4 ARG D 5 ? ? 44.99 80.27 105 4 TYR D 10 ? ? 76.23 95.43 106 4 HIS D 13 ? ? 51.93 76.38 107 4 ALA D 21 ? ? -110.58 -79.51 108 4 ILE D 31 ? ? 53.82 86.42 109 4 ARG E 5 ? ? 45.29 80.07 110 4 TYR E 10 ? ? 76.04 95.80 111 4 HIS E 13 ? ? 52.03 76.51 112 4 ALA E 21 ? ? -109.90 -81.49 113 4 ILE E 31 ? ? 54.47 85.75 114 4 ARG F 5 ? ? 45.21 80.58 115 4 TYR F 10 ? ? 76.31 95.36 116 4 HIS F 13 ? ? 52.38 76.84 117 4 ALA F 21 ? ? -110.00 -81.15 118 4 ILE F 31 ? ? 54.21 86.16 119 4 ARG G 5 ? ? 45.17 80.54 120 4 TYR G 10 ? ? 76.18 95.47 121 4 HIS G 13 ? ? 52.32 76.84 122 4 ALA G 21 ? ? -109.92 -81.37 123 4 ILE G 31 ? ? 54.05 86.15 124 4 ARG H 5 ? ? 45.03 80.31 125 4 TYR H 10 ? ? 76.18 95.46 126 4 HIS H 13 ? ? 51.80 76.46 127 4 ALA H 21 ? ? -110.57 -79.50 128 4 ILE H 31 ? ? 53.83 86.44 129 5 ARG A 5 ? ? 48.35 81.23 130 5 ASP A 7 ? ? 60.86 64.77 131 5 ARG B 5 ? ? 48.28 81.23 132 5 ASP B 7 ? ? 61.11 64.89 133 5 ARG C 5 ? ? 48.44 81.11 134 5 ASP C 7 ? ? 61.25 64.92 135 5 ARG D 5 ? ? 48.15 81.39 136 5 ASP D 7 ? ? 61.04 65.14 137 5 ARG E 5 ? ? 48.39 81.20 138 5 ASP E 7 ? ? 60.82 64.75 139 5 ARG F 5 ? ? 48.29 81.22 140 5 ASP F 7 ? ? 61.25 64.94 141 5 ARG G 5 ? ? 48.41 81.26 142 5 ASP G 7 ? ? 61.25 64.90 143 5 ARG H 5 ? ? 48.21 81.21 144 5 ASP H 7 ? ? 61.11 64.91 145 6 PHE A 4 ? ? 60.99 105.52 146 6 TYR A 10 ? ? 87.69 -77.44 147 6 LEU A 34 ? ? 51.09 80.35 148 6 PHE B 4 ? ? 60.95 105.58 149 6 TYR B 10 ? ? 87.89 -77.49 150 6 LEU B 34 ? ? 51.24 80.72 151 6 PHE C 4 ? ? 60.98 105.53 152 6 TYR C 10 ? ? 88.08 -77.68 153 6 LEU C 34 ? ? 51.22 80.78 154 6 PHE D 4 ? ? 60.71 105.49 155 6 TYR D 10 ? ? 88.09 -77.52 156 6 LEU D 34 ? ? 51.50 79.88 157 6 PHE E 4 ? ? 60.99 105.58 158 6 TYR E 10 ? ? 87.91 -77.41 159 6 LEU E 34 ? ? 50.93 80.44 160 6 PHE F 4 ? ? 60.96 105.59 161 6 TYR F 10 ? ? 87.89 -77.29 162 6 LEU F 34 ? ? 51.28 81.25 163 6 PHE G 4 ? ? 60.91 105.74 164 6 TYR G 10 ? ? 88.04 -77.38 165 6 LEU G 34 ? ? 51.27 81.53 166 6 PHE H 4 ? ? 60.75 105.64 167 6 TYR H 10 ? ? 87.95 -77.55 168 6 LEU H 34 ? ? 51.52 79.74 169 7 TYR A 10 ? ? 78.92 80.19 170 7 HIS A 13 ? ? 51.52 83.50 171 7 TYR B 10 ? ? 79.03 80.25 172 7 HIS B 13 ? ? 51.77 83.37 173 7 TYR C 10 ? ? 78.95 80.39 174 7 HIS C 13 ? ? 51.77 83.32 175 7 TYR D 10 ? ? 79.24 80.29 176 7 HIS D 13 ? ? 51.84 83.36 177 7 TYR E 10 ? ? 78.82 80.08 178 7 HIS E 13 ? ? 51.56 83.47 179 7 TYR F 10 ? ? 78.96 80.32 180 7 HIS F 13 ? ? 51.58 83.42 181 7 TYR G 10 ? ? 78.96 80.39 182 7 HIS G 13 ? ? 51.82 83.29 183 7 TYR H 10 ? ? 79.18 80.18 184 7 HIS H 13 ? ? 51.78 83.42 185 8 PHE A 20 ? ? 55.00 97.12 186 8 GLU A 22 ? ? 65.99 177.42 187 8 PHE B 20 ? ? 55.66 96.95 188 8 GLU B 22 ? ? 65.96 177.23 189 8 PHE C 20 ? ? 56.55 96.82 190 8 GLU C 22 ? ? 66.06 177.28 191 8 PHE D 20 ? ? 54.51 97.51 192 8 GLU D 22 ? ? 65.93 177.00 193 8 PHE E 20 ? ? 54.86 97.15 194 8 GLU E 22 ? ? 65.89 177.42 195 8 PHE F 20 ? ? 56.53 96.75 196 8 GLU F 22 ? ? 66.08 177.41 197 8 PHE G 20 ? ? 56.40 96.65 198 8 GLU G 22 ? ? 66.00 177.22 199 8 PHE H 20 ? ? 54.56 97.44 200 8 GLU H 22 ? ? 65.96 177.06 201 9 PHE A 4 ? ? 55.37 92.13 202 9 PHE B 4 ? ? 55.73 91.86 203 9 PHE C 4 ? ? 55.56 91.96 204 9 PHE D 4 ? ? 55.60 91.70 205 9 PHE E 4 ? ? 55.34 92.05 206 9 PHE F 4 ? ? 55.49 92.01 207 9 PHE G 4 ? ? 55.70 91.91 208 9 PHE H 4 ? ? 55.54 91.65 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 7 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id D _pdbx_unobs_or_zero_occ_residues.auth_comp_id ALA _pdbx_unobs_or_zero_occ_residues.auth_seq_id 42 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id D _pdbx_unobs_or_zero_occ_residues.label_comp_id ALA _pdbx_unobs_or_zero_occ_residues.label_seq_id 42 # _em_buffer_component.buffer_id 1 _em_buffer_component.concentration 10 _em_buffer_component.concentration_units mM _em_buffer_component.formula ? _em_buffer_component.id 1 _em_buffer_component.name 'Sodium Phosphate' # _em_ctf_correction.details CTFFIND-4 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 4514.10 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 179.36 _em_helical_entity.axial_rise_per_subunit 2.48 # _em_image_processing.details 'Gatan Imaging Filter (GIF) Quantum LS' _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1.65 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50.34 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 5557 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 285760 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? RELION 4.0.0 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? RELION 4.0.0 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot ? OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX ? 'MODEL REFINEMENT' ? 10 ? 1 ? 'UCSF Chimera' ? 'MODEL REFINEMENT' ? 11 ? 1 ? X-PLOR Xplor-NIH 'INITIAL EULER ASSIGNMENT' ? 12 1 ? ? RELION 4.0.0 'FINAL EULER ASSIGNMENT' ? 13 1 ? ? RELION 4.0.0 CLASSIFICATION ? 14 1 ? ? RELION 4.0.0 RECONSTRUCTION ? 15 1 ? ? RELION 4.0.0 # _em_specimen.concentration 0.34 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #