HEADER DNA 08-NOV-22 8F2W TITLE STRUCTURE OF A B-FORM DODECAMER: 5'-CGCGAATTCGCG-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'); COMPND 3 CHAIN: B, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SELF-COMPLEMENTARY NATIVE DNA DODECAMER (5'- COMPND 6 CGCGAATTCGCG-3') SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS DNA, AT SEQUENCE, MINOR GROOVE EXPDTA X-RAY DIFFRACTION AUTHOR E.N.OGBONNA,W.D.WILSON REVDAT 3 25-OCT-23 8F2W 1 REMARK REVDAT 2 30-AUG-23 8F2W 1 JRNL REVDAT 1 22-FEB-23 8F2W 0 JRNL AUTH E.N.OGBONNA,A.PAUL,A.A.FARAHAT,J.R.TERRELL,E.MINEVA, JRNL AUTH 2 V.OGBONNA,D.W.BOYKIN,W.D.WILSON JRNL TITL X-RAY STRUCTURE CHARACTERIZATION OF THE SELECTIVE JRNL TITL 2 RECOGNITION OF AT BASE PAIR SEQUENCES. JRNL REF ACS BIO MED CHEM AU V. 3 335 2023 JRNL REFN ESSN 2694-2437 JRNL PMID 37599788 JRNL DOI 10.1021/ACSBIOMEDCHEMAU.3C00002 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.YOON,G.G.PRIVE,D.S.GOODSELL,R.E.DICKERSON,D.W.BOYKIN REMARK 1 TITL STRUCTURE OF AN ALTERNATING B-DNA HELIX AND ITS RELATIONSHIP REMARK 1 TITL 2 TO A-TRACT DNA REMARK 1 REF PNAS BIOCHEMISTRY V. 58 6332 1988 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 16549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2900 - 2.9800 0.96 1349 151 0.1815 0.1912 REMARK 3 2 2.9800 - 2.3600 0.99 1330 147 0.2017 0.2369 REMARK 3 3 2.3600 - 2.0600 0.99 1302 145 0.1818 0.2322 REMARK 3 4 2.0600 - 1.8700 0.96 1259 141 0.1716 0.1924 REMARK 3 5 1.8700 - 1.7400 0.95 1232 137 0.1625 0.1992 REMARK 3 6 1.7400 - 1.6400 0.89 1151 133 0.1492 0.1936 REMARK 3 7 1.6400 - 1.5600 0.87 1127 128 0.1780 0.1928 REMARK 3 8 1.5600 - 1.4900 0.94 1186 132 0.2159 0.2912 REMARK 3 9 1.4900 - 1.4300 0.95 1228 136 0.2163 0.2559 REMARK 3 10 1.4300 - 1.3800 0.97 1248 139 0.2242 0.2551 REMARK 3 11 1.3800 - 1.3400 0.97 1226 137 0.2398 0.3078 REMARK 3 12 1.3400 - 1.3000 0.97 1247 138 0.2669 0.3282 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 544 REMARK 3 ANGLE : 1.444 836 REMARK 3 CHIRALITY : 0.073 94 REMARK 3 PLANARITY : 0.022 24 REMARK 3 DIHEDRAL : 31.005 232 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and ((resid 1 and (name O5" or REMARK 3 name C5" or name C4" or name O4" or name REMARK 3 C3" or name O3" or name C2" or name C1" REMARK 3 or name N1 or name C2 or name O2 or name REMARK 3 N3 or name C4 or name N4 or name C5 or REMARK 3 name C6 )) or (resid 2 and (name P or REMARK 3 name OP1 or name OP2 or name O5" or name REMARK 3 C5" or name C4" or name O4" or name C3" REMARK 3 or name O3" or name C2" or name C1" or REMARK 3 name N9 or name C8 or name N7 or name C5 REMARK 3 or name C6 or name O6 or name N1 or name REMARK 3 C2 or name N2 or name N3 or name C4 )) or REMARK 3 (resid 3 and (name P or name OP1 or name REMARK 3 OP2 or name O5" or name C5" or name C4" REMARK 3 or name O4" or name C3" or name O3" or REMARK 3 name C2" or name C1" or name N1 or name REMARK 3 C2 or name O2 or name N3 or name C4 or REMARK 3 name N4 or name C5 or name C6 )) or REMARK 3 (resid 4 and (name P or name OP1 or name REMARK 3 OP2 or name O5" or name C5" or name C4" REMARK 3 or name O4" or name C3" or name O3" or REMARK 3 name C2" or name C1" or name N9 or name REMARK 3 C8 or name N7 or name C5 or name C6 or REMARK 3 name O6 or name N1 or name C2 or name N2 REMARK 3 or name N3 or name C4 )) or (resid 5 REMARK 3 through 6 and (name P or name OP1 or name REMARK 3 OP2 or name O5" or name C5" or name C4" REMARK 3 or name O4" or name C3" or name O3" or REMARK 3 name C2" or name C1" or name N9 or name REMARK 3 C8 or name N7 or name C5 or name C6 or REMARK 3 name N6 or name N1 or name C2 or name N3 REMARK 3 or name C4 )) or (resid 7 through 8 and REMARK 3 (name P or name OP1 or name OP2 or name REMARK 3 O5" or name C5" or name C4" or name O4" REMARK 3 or name C3" or name O3" or name C2" or REMARK 3 name C1" or name N1 or name C2 or name O2 REMARK 3 or name N3 or name C4 or name O4 or name REMARK 3 C5 or name C7 or name C6 )) or (resid 9 REMARK 3 and (name P or name OP1 or name OP2 or REMARK 3 name O5" or name C5" or name C4" or name REMARK 3 O4" or name C3" or name O3" or name C2" REMARK 3 or name C1" or name N1 or name C2 or name REMARK 3 O2 or name N3 or name C4 or name N4 or REMARK 3 name C5 or name C6 )) or (resid 10 and REMARK 3 (name P or name OP1 or name OP2 or name REMARK 3 O5" or name C5" or name C4" or name O4" REMARK 3 or name C3" or name O3" or name C2" or REMARK 3 name C1" or name N9 or name C8 or name N7 REMARK 3 or name C5 or name C6 or name O6 or name REMARK 3 N1 or name C2 or name N2 or name N3 or REMARK 3 name C4 )) or (resid 11 and (name P or REMARK 3 name OP1 or name OP2 or name O5" or name REMARK 3 C5" or name C4" or name O4" or name C3" REMARK 3 or name O3" or name C2" or name C1" or REMARK 3 name N1 or name C2 or name O2 or name N3 REMARK 3 or name C4 or name N4 or name C5 or name REMARK 3 C6 )) or (resid 12 and (name P or name REMARK 3 OP1 or name OP2 or name O5" or name C5" REMARK 3 or name C4" or name O4" or name C3" or REMARK 3 name O3" or name C2" or name C1" or name REMARK 3 N9 or name C8 or name N7 or name C5 or REMARK 3 name C6 or name O6 or name N1 or name C2 REMARK 3 or name N2 or name N3 or name C4 )))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and ((resid 13 and (name O5" REMARK 3 or name C5" or name C4" or name O4" or REMARK 3 name C3" or name O3" or name C2" or name REMARK 3 C1" or name N1 or name C2 or name O2 or REMARK 3 name N3 or name C4 or name N4 or name C5 REMARK 3 or name C6 )) or (resid 14 and (name P or REMARK 3 name OP1 or name OP2 or name O5" or name REMARK 3 C5" or name C4" or name O4" or name C3" REMARK 3 or name O3" or name C2" or name C1" or REMARK 3 name N9 or name C8 or name N7 or name C5 REMARK 3 or name C6 or name O6 or name N1 or name REMARK 3 C2 or name N2 or name N3 or name C4 )) or REMARK 3 (resid 15 and (name P or name OP1 or name REMARK 3 OP2 or name O5" or name C5" or name C4" REMARK 3 or name O4" or name C3" or name O3" or REMARK 3 name C2" or name C1" or name N1 or name REMARK 3 C2 or name O2 or name N3 or name C4 or REMARK 3 name N4 or name C5 or name C6 )) or REMARK 3 (resid 16 and (name P or name OP1 or name REMARK 3 OP2 or name O5" or name C5" or name C4" REMARK 3 or name O4" or name C3" or name O3" or REMARK 3 name C2" or name C1" or name N9 or name REMARK 3 C8 or name N7 or name C5 or name C6 or REMARK 3 name O6 or name N1 or name C2 or name N2 REMARK 3 or name N3 or name C4 )) or (resid 17 REMARK 3 through 18 and (name P or name OP1 or REMARK 3 name OP2 or name O5" or name C5" or name REMARK 3 C4" or name O4" or name C3" or name O3" REMARK 3 or name C2" or name C1" or name N9 or REMARK 3 name C8 or name N7 or name C5 or name C6 REMARK 3 or name N6 or name N1 or name C2 or name REMARK 3 N3 or name C4 )) or (resid 19 through 20 REMARK 3 and (name P or name OP1 or name OP2 or REMARK 3 name O5" or name C5" or name C4" or name REMARK 3 O4" or name C3" or name O3" or name C2" REMARK 3 or name C1" or name N1 or name C2 or name REMARK 3 O2 or name N3 or name C4 or name O4 or REMARK 3 name C5 or name C7 or name C6 )) or REMARK 3 (resid 21 and (name P or name OP1 or name REMARK 3 OP2 or name O5" or name C5" or name C4" REMARK 3 or name O4" or name C3" or name O3" or REMARK 3 name C2" or name C1" or name N1 or name REMARK 3 C2 or name O2 or name N3 or name C4 or REMARK 3 name N4 or name C5 or name C6 )) or REMARK 3 (resid 22 and (name P or name OP1 or name REMARK 3 OP2 or name O5" or name C5" or name C4" REMARK 3 or name O4" or name C3" or name O3" or REMARK 3 name C2" or name C1" or name N9 or name REMARK 3 C8 or name N7 or name C5 or name C6 or REMARK 3 name O6 or name N1 or name C2 or name N2 REMARK 3 or name N3 or name C4 )) or (resid 23 and REMARK 3 (name P or name OP1 or name OP2 or name REMARK 3 O5" or name C5" or name C4" or name O4" REMARK 3 or name C3" or name O3" or name C2" or REMARK 3 name C1" or name N1 or name C2 or name O2 REMARK 3 or name N3 or name C4 or name N4 or name REMARK 3 C5 or name C6 )) or (resid 24 and (name P REMARK 3 or name OP1 or name OP2 or name O5" or REMARK 3 name C5" or name C4" or name O4" or name REMARK 3 C3" or name O3" or name C2" or name C1" REMARK 3 or name N9 or name C8 or name N7 or name REMARK 3 C5 or name C6 or name O6 or name N1 or REMARK 3 name C2 or name N2 or name N3 or name C4 ) REMARK 3 ))) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8F2W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000269912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL - LN COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16736 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 34.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, SODIUM CACODYLATE TRIHYDRATE, REMARK 280 SPERMINE TETRACHLORIDE, SODIUM CHLORIDE, MAGNESIUM HEXAHYDRATE, REMARK 280 PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 12.79000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.04950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.05200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.04950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 12.79000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.05200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DC C 21 O HOH C 101 1.87 REMARK 500 O HOH C 136 O HOH C 148 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 23 O3' DC C 23 C3' -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 22 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 170 DISTANCE = 6.37 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 212 O REMARK 620 2 HOH B 221 O 93.3 REMARK 620 3 HOH B 225 O 87.7 86.6 REMARK 620 4 HOH B 228 O 92.6 87.2 173.8 REMARK 620 5 HOH B 233 O 175.7 90.6 90.7 89.5 REMARK 620 6 HOH C 120 O 86.6 176.6 90.0 96.2 89.4 REMARK 620 N 1 2 3 4 5 DBREF 8F2W B 1 12 PDB 8F2W 8F2W 1 12 DBREF 8F2W C 13 24 PDB 8F2W 8F2W 13 24 SEQRES 1 B 12 DC DG DC DG DA DA DT DT DC DG DC DG SEQRES 1 C 12 DC DG DC DG DA DA DT DT DC DG DC DG HET MG B 101 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *135(H2 O) LINK MG MG B 101 O HOH B 212 1555 3645 2.02 LINK MG MG B 101 O HOH B 221 1555 1555 2.05 LINK MG MG B 101 O HOH B 225 1555 1555 2.14 LINK MG MG B 101 O HOH B 228 1555 3645 2.07 LINK MG MG B 101 O HOH B 233 1555 1555 2.00 LINK MG MG B 101 O HOH C 120 1555 3645 2.00 CRYST1 25.580 40.104 66.099 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.039093 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024935 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015129 0.00000 MTRIX1 1 0.705841 -0.705949 -0.058524 19.46948 1 MTRIX2 1 -0.707291 -0.706915 -0.003236 46.39117 1 MTRIX3 1 -0.039087 0.043678 -0.998281 17.16893 1