HEADER TRANSCRIPTION 15-NOV-22 8F5Y TITLE CRYSTAL STRUCTURE OF PREGNANE X RECEPTOR LIGAND BINDING DOMAIN TITLE 2 COMPLEXED WITH JQ1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 1 GROUP I MEMBER 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 153-457; COMPND 5 SYNONYM: ORPHAN NUCLEAR RECEPTOR PAR1,ORPHAN NUCLEAR RECEPTOR PXR, COMPND 6 PREGNANE X RECEPTOR,STEROID AND XENOBIOTIC RECEPTOR,SXR; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: NCOA-1,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74,BHLHE74, COMPND 12 PROTEIN HIN-2,RIP160,RENAL CARCINOMA ANTIGEN NY-REN-52,STEROID COMPND 13 RECEPTOR COACTIVATOR 1,SRC-1; COMPND 14 EC: 2.3.1.48; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1I2, PXR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, METABOLISM, ANTIBIOTIC, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.D.HUBER,S.POUDEL,J.SEETHARAMAN,D.J.MILLER,T.CHEN REVDAT 2 06-MAR-24 8F5Y 1 JRNL REVDAT 1 21-FEB-24 8F5Y 0 JRNL AUTH A.D.HUBER,S.POUDEL,J.WU,D.J.MILLER,W.LIN,L.YANG,M.N.BWAYI, JRNL AUTH 2 M.A.RIMMER,R.R.F.GEE,J.SEETHARAMAN,S.C.CHAI,T.CHEN JRNL TITL A BROMODOMAIN-INDEPENDENT MECHANISM OF GENE REGULATION BY JRNL TITL 2 THE BET INHIBITOR JQ1: DIRECT ACTIVATION OF NUCLEAR RECEPTOR JRNL TITL 3 PXR. JRNL REF NUCLEIC ACIDS RES. V. 52 1661 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 38084912 JRNL DOI 10.1093/NAR/GKAD1175 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6100 - 4.9100 1.00 3018 156 0.1921 0.1916 REMARK 3 2 4.9100 - 3.9000 1.00 2906 158 0.1671 0.1677 REMARK 3 3 3.9000 - 3.4100 1.00 2900 126 0.1938 0.1916 REMARK 3 4 3.4100 - 3.1000 1.00 2877 122 0.2259 0.2312 REMARK 3 5 3.1000 - 2.8800 1.00 2852 130 0.2285 0.2295 REMARK 3 6 2.8800 - 2.7100 1.00 2826 170 0.2251 0.2507 REMARK 3 7 2.7100 - 2.5700 1.00 2831 151 0.2432 0.2829 REMARK 3 8 2.5700 - 2.4600 1.00 2821 144 0.2349 0.2798 REMARK 3 9 2.4600 - 2.3600 1.00 2814 148 0.2341 0.2477 REMARK 3 10 2.3600 - 2.2800 1.00 2817 140 0.2355 0.2596 REMARK 3 11 2.2800 - 2.2100 1.00 2798 140 0.2579 0.2919 REMARK 3 12 2.2100 - 2.1500 0.99 2799 141 0.2792 0.3296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.266 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4524 REMARK 3 ANGLE : 0.933 6124 REMARK 3 CHIRALITY : 0.059 672 REMARK 3 PLANARITY : 0.008 776 REMARK 3 DIHEDRAL : 15.576 1644 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 142 through 144 or REMARK 3 (resid 145 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 146 REMARK 3 through 147 or (resid 148 through 149 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 150 through 151 or REMARK 3 (resid 152 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 153 REMARK 3 through 169 or resid 171 through 176 or REMARK 3 resid 210 through 211 or resid 213 REMARK 3 through 217 or (resid 218 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 220 through 225 or resid 227 REMARK 3 through 228 or resid 238 through 269 or REMARK 3 resid 271 through 283 or resid 285 REMARK 3 through 294 or (resid 295 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 296 through 306 or (resid 308 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 321 through 328 REMARK 3 or resid 330 through 358 or resid 360 REMARK 3 through 366 or resid 368 through 382 or REMARK 3 (resid 383 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 384 REMARK 3 through 386 or resid 388 through 398 or REMARK 3 (resid 399 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 400 REMARK 3 through 405 or resid 408 or resid 411 REMARK 3 through 412 or resid 414 through 415 or REMARK 3 (resid 416 through 417 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 418 through 430 or (resid 431 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 501)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 142 through 169 or REMARK 3 resid 171 through 176 or resid 210 REMARK 3 through 211 or resid 213 through 215 or REMARK 3 (resid 216 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 217 REMARK 3 through 218 or resid 220 through 225 or REMARK 3 resid 227 through 269 or resid 271 REMARK 3 through 283 or resid 285 through 306 or REMARK 3 resid 308 through 328 or resid 330 REMARK 3 through 358 or resid 360 through 363 or REMARK 3 (resid 364 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 365 REMARK 3 through 366 or resid 368 through 386 or REMARK 3 resid 388 through 405 or resid 408 or REMARK 3 resid 411 through 412 or resid 414 REMARK 3 through 501)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and resid 685 through 695) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 685 through 687 or REMARK 3 (resid 688 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 689 REMARK 3 through 695)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8F5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000269923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92010 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36061 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 43.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.79700 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NRL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM IMIDAZOLE PH 7.0, 8% REMARK 280 ISOPROPANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.77350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.83450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.28100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.83450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.77350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.28100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 119 REMARK 465 GLY A 120 REMARK 465 LYS A 121 REMARK 465 GLY A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLU A 131 REMARK 465 ARG A 132 REMARK 465 THR A 133 REMARK 465 GLY A 134 REMARK 465 THR A 135 REMARK 465 GLN A 136 REMARK 465 PRO A 137 REMARK 465 LEU A 138 REMARK 465 GLY A 139 REMARK 465 VAL A 140 REMARK 465 GLN A 141 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 CYS A 182 REMARK 465 GLU A 183 REMARK 465 LEU A 184 REMARK 465 PRO A 185 REMARK 465 GLU A 186 REMARK 465 SER A 187 REMARK 465 LEU A 188 REMARK 465 GLN A 189 REMARK 465 ALA A 190 REMARK 465 PRO A 191 REMARK 465 SER A 192 REMARK 465 GLY A 433 REMARK 465 SER A 434 REMARK 465 MET B 119 REMARK 465 GLY B 120 REMARK 465 LYS B 121 REMARK 465 GLY B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 GLY B 129 REMARK 465 SER B 130 REMARK 465 GLU B 131 REMARK 465 ARG B 132 REMARK 465 THR B 133 REMARK 465 GLY B 134 REMARK 465 THR B 135 REMARK 465 GLN B 136 REMARK 465 PRO B 137 REMARK 465 LEU B 138 REMARK 465 GLY B 139 REMARK 465 VAL B 140 REMARK 465 GLN B 141 REMARK 465 LEU B 178 REMARK 465 SER B 179 REMARK 465 SER B 180 REMARK 465 GLY B 181 REMARK 465 CYS B 182 REMARK 465 GLU B 183 REMARK 465 LEU B 184 REMARK 465 PRO B 185 REMARK 465 GLU B 186 REMARK 465 SER B 187 REMARK 465 LEU B 188 REMARK 465 GLN B 189 REMARK 465 ALA B 190 REMARK 465 PRO B 191 REMARK 465 SER B 192 REMARK 465 ARG B 193 REMARK 465 GLU B 194 REMARK 465 GLU B 195 REMARK 465 ALA B 196 REMARK 465 ALA B 197 REMARK 465 LYS B 198 REMARK 465 TRP B 199 REMARK 465 SER B 200 REMARK 465 GLN B 201 REMARK 465 VAL B 202 REMARK 465 ARG B 203 REMARK 465 LYS B 204 REMARK 465 ASP B 205 REMARK 465 LEU B 206 REMARK 465 CYS B 207 REMARK 465 SER B 208 REMARK 465 LEU B 209 REMARK 465 ALA B 229 REMARK 465 ASP B 230 REMARK 465 SER B 231 REMARK 465 GLY B 232 REMARK 465 GLY B 233 REMARK 465 LYS B 234 REMARK 465 GLU B 235 REMARK 465 ILE B 236 REMARK 465 PHE B 237 REMARK 465 GLU B 309 REMARK 465 ASP B 310 REMARK 465 THR B 311 REMARK 465 ALA B 312 REMARK 465 GLY B 313 REMARK 465 GLY B 314 REMARK 465 PHE B 315 REMARK 465 GLN B 316 REMARK 465 GLN B 317 REMARK 465 LEU B 318 REMARK 465 LEU B 319 REMARK 465 LEU B 320 REMARK 465 THR B 432 REMARK 465 GLY B 433 REMARK 465 SER B 434 REMARK 465 CYS C 676 REMARK 465 PRO C 677 REMARK 465 SER C 678 REMARK 465 SER C 679 REMARK 465 HIS C 680 REMARK 465 SER C 681 REMARK 465 SER C 682 REMARK 465 LEU C 683 REMARK 465 THR C 684 REMARK 465 SER C 698 REMARK 465 PRO C 699 REMARK 465 SER C 700 REMARK 465 CYS D 676 REMARK 465 PRO D 677 REMARK 465 SER D 678 REMARK 465 SER D 679 REMARK 465 HIS D 680 REMARK 465 SER D 681 REMARK 465 GLY D 697 REMARK 465 SER D 698 REMARK 465 PRO D 699 REMARK 465 SER D 700 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 148 CD NE CZ NH1 NH2 REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 SER A 231 OG REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 THR A 311 OG1 CG2 REMARK 470 ARG A 360 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 364 CG CD OE1 NE2 REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 MET B 149 CG SD CE REMARK 470 ARG B 152 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 177 CG1 CG2 REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 470 GLU B 295 CG CD OE1 OE2 REMARK 470 LEU B 308 CG CD1 CD2 REMARK 470 ARG B 360 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 383 CG CD OE1 NE2 REMARK 470 GLU B 399 CG CD OE1 OE2 REMARK 470 ASP B 416 CG OD1 OD2 REMARK 470 ILE B 417 CG1 CG2 CD1 REMARK 470 ILE B 431 CG1 CG2 CD1 REMARK 470 GLU C 685 CG CD OE1 OE2 REMARK 470 ARG C 686 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 688 CG CD CE NZ REMARK 470 SER D 682 OG REMARK 470 GLU D 685 CG CD OE1 OE2 REMARK 470 ARG D 686 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 231 -86.81 -98.90 REMARK 500 LYS A 234 -55.46 62.04 REMARK 500 CYS A 301 59.77 -108.38 REMARK 500 THR A 311 -158.01 -116.69 REMARK 500 PHE A 349 52.51 -91.32 REMARK 500 PHE A 420 -25.19 -140.59 REMARK 500 CYS B 301 49.44 -106.50 REMARK 500 PHE B 349 56.08 -93.49 REMARK 500 ARG B 381 82.45 -156.00 REMARK 500 PHE B 420 -27.01 -149.18 REMARK 500 REMARK 500 REMARK: NULL DBREF 8F5Y A 130 434 UNP O75469 NR1I2_HUMAN 153 457 DBREF 8F5Y B 130 434 UNP O75469 NR1I2_HUMAN 153 457 DBREF 8F5Y C 676 700 UNP Q15788 NCOA1_HUMAN 676 700 DBREF 8F5Y D 676 700 UNP Q15788 NCOA1_HUMAN 676 700 SEQADV 8F5Y MET A 119 UNP O75469 INITIATING METHIONINE SEQADV 8F5Y GLY A 120 UNP O75469 EXPRESSION TAG SEQADV 8F5Y LYS A 121 UNP O75469 EXPRESSION TAG SEQADV 8F5Y GLY A 122 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS A 123 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS A 124 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS A 125 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS A 126 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS A 127 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS A 128 UNP O75469 EXPRESSION TAG SEQADV 8F5Y GLY A 129 UNP O75469 EXPRESSION TAG SEQADV 8F5Y MET B 119 UNP O75469 INITIATING METHIONINE SEQADV 8F5Y GLY B 120 UNP O75469 EXPRESSION TAG SEQADV 8F5Y LYS B 121 UNP O75469 EXPRESSION TAG SEQADV 8F5Y GLY B 122 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS B 123 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS B 124 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS B 125 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS B 126 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS B 127 UNP O75469 EXPRESSION TAG SEQADV 8F5Y HIS B 128 UNP O75469 EXPRESSION TAG SEQADV 8F5Y GLY B 129 UNP O75469 EXPRESSION TAG SEQRES 1 A 316 MET GLY LYS GLY HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 A 316 ARG THR GLY THR GLN PRO LEU GLY VAL GLN GLY LEU THR SEQRES 3 A 316 GLU GLU GLN ARG MET MET ILE ARG GLU LEU MET ASP ALA SEQRES 4 A 316 GLN MET LYS THR PHE ASP THR THR PHE SER HIS PHE LYS SEQRES 5 A 316 ASN PHE ARG LEU PRO GLY VAL LEU SER SER GLY CYS GLU SEQRES 6 A 316 LEU PRO GLU SER LEU GLN ALA PRO SER ARG GLU GLU ALA SEQRES 7 A 316 ALA LYS TRP SER GLN VAL ARG LYS ASP LEU CYS SER LEU SEQRES 8 A 316 LYS VAL SER LEU GLN LEU ARG GLY GLU ASP GLY SER VAL SEQRES 9 A 316 TRP ASN TYR LYS PRO PRO ALA ASP SER GLY GLY LYS GLU SEQRES 10 A 316 ILE PHE SER LEU LEU PRO HIS MET ALA ASP MET SER THR SEQRES 11 A 316 TYR MET PHE LYS GLY ILE ILE SER PHE ALA LYS VAL ILE SEQRES 12 A 316 SER TYR PHE ARG ASP LEU PRO ILE GLU ASP GLN ILE SER SEQRES 13 A 316 LEU LEU LYS GLY ALA ALA PHE GLU LEU CYS GLN LEU ARG SEQRES 14 A 316 PHE ASN THR VAL PHE ASN ALA GLU THR GLY THR TRP GLU SEQRES 15 A 316 CYS GLY ARG LEU SER TYR CYS LEU GLU ASP THR ALA GLY SEQRES 16 A 316 GLY PHE GLN GLN LEU LEU LEU GLU PRO MET LEU LYS PHE SEQRES 17 A 316 HIS TYR MET LEU LYS LYS LEU GLN LEU HIS GLU GLU GLU SEQRES 18 A 316 TYR VAL LEU MET GLN ALA ILE SER LEU PHE SER PRO ASP SEQRES 19 A 316 ARG PRO GLY VAL LEU GLN HIS ARG VAL VAL ASP GLN LEU SEQRES 20 A 316 GLN GLU GLN PHE ALA ILE THR LEU LYS SER TYR ILE GLU SEQRES 21 A 316 CYS ASN ARG PRO GLN PRO ALA HIS ARG PHE LEU PHE LEU SEQRES 22 A 316 LYS ILE MET ALA MET LEU THR GLU LEU ARG SER ILE ASN SEQRES 23 A 316 ALA GLN HIS THR GLN ARG LEU LEU ARG ILE GLN ASP ILE SEQRES 24 A 316 HIS PRO PHE ALA THR PRO LEU MET GLN GLU LEU PHE GLY SEQRES 25 A 316 ILE THR GLY SER SEQRES 1 B 316 MET GLY LYS GLY HIS HIS HIS HIS HIS HIS GLY SER GLU SEQRES 2 B 316 ARG THR GLY THR GLN PRO LEU GLY VAL GLN GLY LEU THR SEQRES 3 B 316 GLU GLU GLN ARG MET MET ILE ARG GLU LEU MET ASP ALA SEQRES 4 B 316 GLN MET LYS THR PHE ASP THR THR PHE SER HIS PHE LYS SEQRES 5 B 316 ASN PHE ARG LEU PRO GLY VAL LEU SER SER GLY CYS GLU SEQRES 6 B 316 LEU PRO GLU SER LEU GLN ALA PRO SER ARG GLU GLU ALA SEQRES 7 B 316 ALA LYS TRP SER GLN VAL ARG LYS ASP LEU CYS SER LEU SEQRES 8 B 316 LYS VAL SER LEU GLN LEU ARG GLY GLU ASP GLY SER VAL SEQRES 9 B 316 TRP ASN TYR LYS PRO PRO ALA ASP SER GLY GLY LYS GLU SEQRES 10 B 316 ILE PHE SER LEU LEU PRO HIS MET ALA ASP MET SER THR SEQRES 11 B 316 TYR MET PHE LYS GLY ILE ILE SER PHE ALA LYS VAL ILE SEQRES 12 B 316 SER TYR PHE ARG ASP LEU PRO ILE GLU ASP GLN ILE SER SEQRES 13 B 316 LEU LEU LYS GLY ALA ALA PHE GLU LEU CYS GLN LEU ARG SEQRES 14 B 316 PHE ASN THR VAL PHE ASN ALA GLU THR GLY THR TRP GLU SEQRES 15 B 316 CYS GLY ARG LEU SER TYR CYS LEU GLU ASP THR ALA GLY SEQRES 16 B 316 GLY PHE GLN GLN LEU LEU LEU GLU PRO MET LEU LYS PHE SEQRES 17 B 316 HIS TYR MET LEU LYS LYS LEU GLN LEU HIS GLU GLU GLU SEQRES 18 B 316 TYR VAL LEU MET GLN ALA ILE SER LEU PHE SER PRO ASP SEQRES 19 B 316 ARG PRO GLY VAL LEU GLN HIS ARG VAL VAL ASP GLN LEU SEQRES 20 B 316 GLN GLU GLN PHE ALA ILE THR LEU LYS SER TYR ILE GLU SEQRES 21 B 316 CYS ASN ARG PRO GLN PRO ALA HIS ARG PHE LEU PHE LEU SEQRES 22 B 316 LYS ILE MET ALA MET LEU THR GLU LEU ARG SER ILE ASN SEQRES 23 B 316 ALA GLN HIS THR GLN ARG LEU LEU ARG ILE GLN ASP ILE SEQRES 24 B 316 HIS PRO PHE ALA THR PRO LEU MET GLN GLU LEU PHE GLY SEQRES 25 B 316 ILE THR GLY SER SEQRES 1 C 25 CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS LYS SEQRES 2 C 25 ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER SEQRES 1 D 25 CYS PRO SER SER HIS SER SER LEU THR GLU ARG HIS LYS SEQRES 2 D 25 ILE LEU HIS ARG LEU LEU GLN GLU GLY SER PRO SER HET JQ1 A 501 31 HET JQ1 B 501 31 HETNAM JQ1 (6S)-6-(2-TERT-BUTOXY-2-OXOETHYL)-4-(4-CHLOROPHENYL)-2, HETNAM 2 JQ1 3,9-TRIMETHYL-6,7-DIHYDROTHIENO[3,2-F][1,2, HETNAM 3 JQ1 4]TRIAZOLO[4,3-A][1,4]DIAZEPIN-10-IUM FORMUL 5 JQ1 2(C23 H26 CL N4 O2 S 1+) FORMUL 7 HOH *96(H2 O) HELIX 1 AA1 THR A 144 PHE A 162 1 19 HELIX 2 AA2 GLU A 194 CYS A 207 1 14 HELIX 3 AA3 LYS A 234 SER A 238 5 5 HELIX 4 AA4 LEU A 239 VAL A 260 1 22 HELIX 5 AA5 ILE A 261 ASP A 266 1 6 HELIX 6 AA6 PRO A 268 VAL A 291 1 24 HELIX 7 AA7 GLY A 314 LEU A 319 1 6 HELIX 8 AA8 GLU A 321 LEU A 333 1 13 HELIX 9 AA9 HIS A 336 PHE A 349 1 14 HELIX 10 AB1 GLN A 358 ARG A 381 1 24 HELIX 11 AB2 GLN A 383 ARG A 387 5 5 HELIX 12 AB3 PHE A 388 HIS A 418 1 31 HELIX 13 AB4 THR A 422 GLY A 430 1 9 HELIX 14 AB5 THR B 144 PHE B 162 1 19 HELIX 15 AB6 LEU B 239 VAL B 260 1 22 HELIX 16 AB7 ILE B 261 ASP B 266 1 6 HELIX 17 AB8 PRO B 268 THR B 290 1 23 HELIX 18 AB9 PRO B 322 LEU B 333 1 12 HELIX 19 AC1 HIS B 336 PHE B 349 1 14 HELIX 20 AC2 GLN B 358 ARG B 381 1 24 HELIX 21 AC3 GLN B 383 ARG B 387 5 5 HELIX 22 AC4 PHE B 388 HIS B 418 1 31 HELIX 23 AC5 THR B 422 PHE B 429 1 8 HELIX 24 AC6 HIS C 687 GLU C 696 1 10 HELIX 25 AC7 LEU D 683 HIS D 687 1 5 HELIX 26 AC8 HIS D 687 GLU D 696 1 10 SHEET 1 AA110 PHE A 292 ASN A 293 0 SHEET 2 AA110 THR A 298 CYS A 301 -1 O THR A 298 N ASN A 293 SHEET 3 AA110 LEU A 304 LEU A 308 -1 O TYR A 306 N TRP A 299 SHEET 4 AA110 VAL A 211 ARG A 216 -1 N SER A 212 O CYS A 307 SHEET 5 AA110 VAL A 222 LYS A 226 -1 O TYR A 225 N LEU A 213 SHEET 6 AA110 VAL B 222 LYS B 226 -1 O ASN B 224 N ASN A 224 SHEET 7 AA110 SER B 212 ARG B 216 -1 N LEU B 213 O TYR B 225 SHEET 8 AA110 LEU B 304 CYS B 307 -1 O CYS B 307 N SER B 212 SHEET 9 AA110 THR B 298 CYS B 301 -1 N TRP B 299 O TYR B 306 SHEET 10 AA110 PHE B 292 ASN B 293 -1 N ASN B 293 O THR B 298 CRYST1 75.547 82.562 103.669 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013237 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009646 0.00000 MTRIX1 1 -0.976090 0.128060 0.175638 54.32943 1 MTRIX2 1 0.190698 0.116717 0.974685 5.71443 1 MTRIX3 1 0.104318 0.984875 -0.138347 -15.76976 1