HEADER SIGNALING PROTEIN, TRANSFERASE 17-NOV-22 8F71 TITLE CRYSTAL STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF TITLE 2 BACTERIOPHYTOCHROME RPBPHP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HISTIDINE KINASE DOMAIN (UNP RESIDUES 506-758); COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: ATP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS CGA009; SOURCE 3 ORGANISM_TAXID: 258594; SOURCE 4 GENE: PHYB1, RPA3015; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTIDINE KINASE, BACTERIOPHYTOCHROME, SIGNALING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.YANG,I.KUMARAPPERUMA,I.TOM REVDAT 3 23-OCT-24 8F71 1 REMARK REVDAT 2 06-DEC-23 8F71 1 JRNL REVDAT 1 22-NOV-23 8F71 0 JRNL AUTH I.KUMARAPPERUMA,I.P.TOM,S.BANDARA,S.MONTANO,X.YANG JRNL TITL MODE OF AUTOPHOSPHORYLATION IN BACTERIOPHYTOCHROMES RPBPHP2 JRNL TITL 2 AND RPBPHP3. JRNL REF PHOTOCHEM PHOTOBIOL SCI V. 22 1257 2023 JRNL REFN ISSN 1474-9092 JRNL PMID 36757561 JRNL DOI 10.1007/S43630-023-00366-9 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 22330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1100 - 6.3800 0.97 2663 130 0.1869 0.2524 REMARK 3 2 6.3800 - 5.0700 0.96 2643 141 0.2332 0.2694 REMARK 3 3 5.0700 - 4.4300 0.96 2634 144 0.1956 0.2278 REMARK 3 4 4.4300 - 4.0200 0.97 2663 136 0.2088 0.2399 REMARK 3 5 4.0200 - 3.7400 0.96 2650 132 0.2409 0.2662 REMARK 3 6 3.7400 - 3.5200 0.96 2617 137 0.2632 0.2751 REMARK 3 7 3.5200 - 3.3400 0.97 2671 139 0.3079 0.3929 REMARK 3 8 3.3400 - 3.1900 0.98 2686 144 0.3313 0.3553 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 102.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 NULL REMARK 3 ANGLE : 0.924 NULL REMARK 3 CHIRALITY : 0.057 473 REMARK 3 PLANARITY : 0.009 570 REMARK 3 DIHEDRAL : 7.016 440 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 80.4017 22.6786 155.1875 REMARK 3 T TENSOR REMARK 3 T11: 0.8182 T22: 0.9049 REMARK 3 T33: 0.8953 T12: 0.1657 REMARK 3 T13: -0.1041 T23: -0.3219 REMARK 3 L TENSOR REMARK 3 L11: 3.6853 L22: 3.1343 REMARK 3 L33: 4.6424 L12: 1.3965 REMARK 3 L13: 2.6395 L23: 2.1259 REMARK 3 S TENSOR REMARK 3 S11: 0.1390 S12: 0.6557 S13: -0.5045 REMARK 3 S21: 0.2152 S22: 0.4047 S23: -0.6281 REMARK 3 S31: 0.5765 S32: 1.0292 S33: -0.5715 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 41.2673 18.7615 166.6531 REMARK 3 T TENSOR REMARK 3 T11: 0.8595 T22: 0.6722 REMARK 3 T33: 0.8885 T12: -0.0262 REMARK 3 T13: -0.0035 T23: -0.1877 REMARK 3 L TENSOR REMARK 3 L11: 2.3696 L22: 1.5752 REMARK 3 L33: 7.0003 L12: -1.8007 REMARK 3 L13: -3.7123 L23: 2.4787 REMARK 3 S TENSOR REMARK 3 S11: -0.1515 S12: 0.1508 S13: -0.3109 REMARK 3 S21: 0.3270 S22: 0.0181 S23: 0.3697 REMARK 3 S31: 0.7208 S32: -0.2084 S33: 0.1866 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8F71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000269370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22330 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2 M SODIUM CHLORIDE, REMARK 280 0.1 M TRIS-HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 230.70667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 173.03000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 288.38333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.67667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 115.35333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 230.70667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 288.38333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 173.03000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 57.67667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 505 REMARK 465 THR A 506 REMARK 465 GLU A 507 REMARK 465 LYS A 508 REMARK 465 LEU A 509 REMARK 465 GLU A 510 REMARK 465 ARG A 511 REMARK 465 ILE A 512 REMARK 465 ASN A 513 REMARK 465 THR A 514 REMARK 465 GLN A 515 REMARK 465 LEU A 516 REMARK 465 ALA A 517 REMARK 465 ARG A 518 REMARK 465 SER A 519 REMARK 465 ASN A 520 REMARK 465 GLU A 521 REMARK 465 GLU A 522 REMARK 465 LEU A 523 REMARK 465 GLU A 524 REMARK 465 SER A 525 REMARK 465 PHE A 526 REMARK 465 ALA A 527 REMARK 465 HIS A 528 REMARK 465 VAL A 529 REMARK 465 ALA A 530 REMARK 465 SER A 531 REMARK 465 HIS A 532 REMARK 465 ASP A 533 REMARK 465 ILE A 534 REMARK 465 LYS A 535 REMARK 465 GLU A 536 REMARK 465 PRO A 537 REMARK 465 LEU A 538 REMARK 465 ARG A 539 REMARK 465 HIS A 540 REMARK 465 ILE A 541 REMARK 465 GLU A 542 REMARK 465 ALA A 543 REMARK 465 PHE A 544 REMARK 465 ALA A 545 REMARK 465 ASP A 666 REMARK 465 ASP A 667 REMARK 465 ASN A 668 REMARK 465 GLY A 669 REMARK 465 GLY A 670 REMARK 465 ARG A 671 REMARK 465 ALA A 672 REMARK 465 GLU A 673 REMARK 465 ILE A 674 REMARK 465 GLY A 675 REMARK 465 SER A 676 REMARK 465 ALA A 677 REMARK 465 PRO A 678 REMARK 465 ASP A 753 REMARK 465 ASP A 754 REMARK 465 HIS A 755 REMARK 465 GLY A 756 REMARK 465 GLN A 757 REMARK 465 GLY A 758 REMARK 465 LEU A 759 REMARK 465 GLU A 760 REMARK 465 HIS A 761 REMARK 465 HIS A 762 REMARK 465 HIS A 763 REMARK 465 HIS A 764 REMARK 465 HIS A 765 REMARK 465 MSE B 505 REMARK 465 THR B 506 REMARK 465 GLU B 507 REMARK 465 LYS B 508 REMARK 465 LEU B 509 REMARK 465 GLU B 510 REMARK 465 ARG B 511 REMARK 465 ILE B 512 REMARK 465 ASN B 513 REMARK 465 THR B 514 REMARK 465 GLN B 515 REMARK 465 LEU B 516 REMARK 465 ALA B 517 REMARK 465 ARG B 518 REMARK 465 SER B 519 REMARK 465 ASN B 520 REMARK 465 GLU B 521 REMARK 465 GLU B 522 REMARK 465 LEU B 523 REMARK 465 GLU B 524 REMARK 465 SER B 525 REMARK 465 PHE B 526 REMARK 465 ALA B 527 REMARK 465 HIS B 528 REMARK 465 VAL B 529 REMARK 465 ALA B 530 REMARK 465 SER B 531 REMARK 465 HIS B 532 REMARK 465 ASP B 533 REMARK 465 ILE B 534 REMARK 465 LYS B 535 REMARK 465 GLU B 536 REMARK 465 PRO B 537 REMARK 465 LEU B 538 REMARK 465 ARG B 539 REMARK 465 HIS B 540 REMARK 465 ILE B 541 REMARK 465 GLU B 542 REMARK 465 ALA B 543 REMARK 465 PHE B 544 REMARK 465 ALA B 545 REMARK 465 GLY B 546 REMARK 465 LEU B 547 REMARK 465 LEU B 548 REMARK 465 GLY B 669 REMARK 465 GLY B 670 REMARK 465 ARG B 671 REMARK 465 ALA B 672 REMARK 465 GLU B 673 REMARK 465 ILE B 674 REMARK 465 GLY B 675 REMARK 465 SER B 676 REMARK 465 ASP B 753 REMARK 465 ASP B 754 REMARK 465 HIS B 755 REMARK 465 GLY B 756 REMARK 465 GLN B 757 REMARK 465 GLY B 758 REMARK 465 LEU B 759 REMARK 465 GLU B 760 REMARK 465 HIS B 761 REMARK 465 HIS B 762 REMARK 465 HIS B 763 REMARK 465 HIS B 764 REMARK 465 HIS B 765 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 646 O2A ATP A 801 1.30 REMARK 500 O LEU B 581 OG SER B 585 2.04 REMARK 500 OG SER B 647 OD2 ASP B 686 2.15 REMARK 500 OG1 THR A 685 OG1 THR A 744 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 732 OE2 GLU B 605 8666 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 550 ASN B 551 144.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 646 OD1 REMARK 620 2 ATP A 801 O1G 131.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 646 OD1 REMARK 620 2 ATP B 801 O3G 142.5 REMARK 620 N 1 DBREF 8F71 A 506 758 UNP Q6N5G3 Q6N5G3_RHOPA 506 758 DBREF 8F71 B 506 758 UNP Q6N5G3 Q6N5G3_RHOPA 506 758 SEQADV 8F71 MSE A 505 UNP Q6N5G3 INITIATING METHIONINE SEQADV 8F71 LEU A 759 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 GLU A 760 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 HIS A 761 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 HIS A 762 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 HIS A 763 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 HIS A 764 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 HIS A 765 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 MSE B 505 UNP Q6N5G3 INITIATING METHIONINE SEQADV 8F71 LEU B 759 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 GLU B 760 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 HIS B 761 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 HIS B 762 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 HIS B 763 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 HIS B 764 UNP Q6N5G3 EXPRESSION TAG SEQADV 8F71 HIS B 765 UNP Q6N5G3 EXPRESSION TAG SEQRES 1 A 261 MSE THR GLU LYS LEU GLU ARG ILE ASN THR GLN LEU ALA SEQRES 2 A 261 ARG SER ASN GLU GLU LEU GLU SER PHE ALA HIS VAL ALA SEQRES 3 A 261 SER HIS ASP ILE LYS GLU PRO LEU ARG HIS ILE GLU ALA SEQRES 4 A 261 PHE ALA GLY LEU LEU ALA ASP ASN ILE ARG GLU MSE GLY SEQRES 5 A 261 ASP GLU ARG LEU GLY VAL MSE VAL SER GLY ILE GLU LYS SEQRES 6 A 261 SER SER ARG ARG LEU ARG ASN LEU ILE ASN ASP LEU ALA SEQRES 7 A 261 GLU PHE SER GLN LEU GLY ARG ARG SER LYS PRO LEU SER SEQRES 8 A 261 TRP VAL SER LEU GLU THR VAL LEU ASN GLU VAL LEU ALA SEQRES 9 A 261 ASP LEU GLN PRO ARG ILE THR GLU ALA ARG ALA GLU ILE SEQRES 10 A 261 GLN ALA ASP ARG LEU PRO PHE ALA ARG CYS ASP HIS ASN SEQRES 11 A 261 GLN ILE ARG GLN VAL LEU GLN ASN LEU ILE ALA ASN SER SEQRES 12 A 261 LEU LYS TYR ARG ASP PRO ALA ARG PRO CYS ARG ILE ARG SEQRES 13 A 261 ILE PHE ALA GLN PRO ASP ASP ASN GLY GLY ARG ALA GLU SEQRES 14 A 261 ILE GLY SER ALA PRO ALA ILE ARG ILE CYS VAL THR ASP SEQRES 15 A 261 ASN GLY ILE GLY PHE ASP LYS LYS TYR ILE ASP GLN VAL SEQRES 16 A 261 PHE GLU PRO PHE GLN ARG LEU HIS GLY PRO ASP ASP TYR SEQRES 17 A 261 GLU GLY SER GLY ILE GLY LEU ALA ILE CYS ARG LYS ILE SEQRES 18 A 261 VAL GLN ARG HIS GLY GLY ARG VAL GLY VAL ASP THR VAL SEQRES 19 A 261 PRO GLY GLN GLY SER THR PHE TRP PHE THR LEU PRO VAL SEQRES 20 A 261 SER ASP ASP HIS GLY GLN GLY LEU GLU HIS HIS HIS HIS SEQRES 21 A 261 HIS SEQRES 1 B 261 MSE THR GLU LYS LEU GLU ARG ILE ASN THR GLN LEU ALA SEQRES 2 B 261 ARG SER ASN GLU GLU LEU GLU SER PHE ALA HIS VAL ALA SEQRES 3 B 261 SER HIS ASP ILE LYS GLU PRO LEU ARG HIS ILE GLU ALA SEQRES 4 B 261 PHE ALA GLY LEU LEU ALA ASP ASN ILE ARG GLU MSE GLY SEQRES 5 B 261 ASP GLU ARG LEU GLY VAL MSE VAL SER GLY ILE GLU LYS SEQRES 6 B 261 SER SER ARG ARG LEU ARG ASN LEU ILE ASN ASP LEU ALA SEQRES 7 B 261 GLU PHE SER GLN LEU GLY ARG ARG SER LYS PRO LEU SER SEQRES 8 B 261 TRP VAL SER LEU GLU THR VAL LEU ASN GLU VAL LEU ALA SEQRES 9 B 261 ASP LEU GLN PRO ARG ILE THR GLU ALA ARG ALA GLU ILE SEQRES 10 B 261 GLN ALA ASP ARG LEU PRO PHE ALA ARG CYS ASP HIS ASN SEQRES 11 B 261 GLN ILE ARG GLN VAL LEU GLN ASN LEU ILE ALA ASN SER SEQRES 12 B 261 LEU LYS TYR ARG ASP PRO ALA ARG PRO CYS ARG ILE ARG SEQRES 13 B 261 ILE PHE ALA GLN PRO ASP ASP ASN GLY GLY ARG ALA GLU SEQRES 14 B 261 ILE GLY SER ALA PRO ALA ILE ARG ILE CYS VAL THR ASP SEQRES 15 B 261 ASN GLY ILE GLY PHE ASP LYS LYS TYR ILE ASP GLN VAL SEQRES 16 B 261 PHE GLU PRO PHE GLN ARG LEU HIS GLY PRO ASP ASP TYR SEQRES 17 B 261 GLU GLY SER GLY ILE GLY LEU ALA ILE CYS ARG LYS ILE SEQRES 18 B 261 VAL GLN ARG HIS GLY GLY ARG VAL GLY VAL ASP THR VAL SEQRES 19 B 261 PRO GLY GLN GLY SER THR PHE TRP PHE THR LEU PRO VAL SEQRES 20 B 261 SER ASP ASP HIS GLY GLN GLY LEU GLU HIS HIS HIS HIS SEQRES 21 B 261 HIS MODRES 8F71 MSE A 555 MET MODIFIED RESIDUE MODRES 8F71 MSE A 563 MET MODIFIED RESIDUE MODRES 8F71 MSE B 555 MET MODIFIED RESIDUE MODRES 8F71 MSE B 563 MET MODIFIED RESIDUE HET MSE A 555 8 HET MSE A 563 8 HET MSE B 555 8 HET MSE B 563 8 HET ATP A 801 43 HET MG A 802 1 HET ATP B 801 43 HET MG B 802 1 HETNAM MSE SELENOMETHIONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *4(H2 O) HELIX 1 AA1 LEU A 547 ARG A 590 1 44 HELIX 2 AA2 LEU A 599 LEU A 610 1 12 HELIX 3 AA3 LEU A 610 ALA A 617 1 8 HELIX 4 AA4 ASP A 632 TYR A 650 1 19 HELIX 5 AA5 TYR A 695 PHE A 700 1 6 HELIX 6 AA6 ILE A 717 HIS A 729 1 13 HELIX 7 AA7 ASN B 551 ARG B 590 1 40 HELIX 8 AA8 LEU B 599 LEU B 610 1 12 HELIX 9 AA9 LEU B 610 ALA B 617 1 8 HELIX 10 AB1 ASP B 632 TYR B 650 1 19 HELIX 11 AB2 ASP B 692 ILE B 696 5 5 HELIX 12 AB3 ASP B 697 GLU B 701 5 5 HELIX 13 AB4 ILE B 717 HIS B 729 1 13 SHEET 1 AA1 2 SER A 595 SER A 598 0 SHEET 2 AA1 2 PHE A 628 CYS A 631 -1 O CYS A 631 N SER A 595 SHEET 1 AA2 5 GLU A 620 ALA A 623 0 SHEET 2 AA2 5 ARG A 658 GLN A 664 1 O ILE A 659 N GLU A 620 SHEET 3 AA2 5 ILE A 680 ASP A 686 -1 O THR A 685 N ARG A 660 SHEET 4 AA2 5 GLY A 742 LEU A 749 -1 O PHE A 747 N ILE A 682 SHEET 5 AA2 5 VAL A 733 VAL A 738 -1 N GLY A 734 O TRP A 746 SHEET 1 AA3 2 SER B 595 SER B 598 0 SHEET 2 AA3 2 PHE B 628 CYS B 631 -1 O ALA B 629 N VAL B 597 SHEET 1 AA4 5 GLU B 620 ALA B 623 0 SHEET 2 AA4 5 ARG B 658 PRO B 665 1 O ILE B 659 N GLN B 622 SHEET 3 AA4 5 ILE B 680 ASP B 686 -1 O CYS B 683 N PHE B 662 SHEET 4 AA4 5 GLY B 742 LEU B 749 -1 O PHE B 745 N VAL B 684 SHEET 5 AA4 5 VAL B 733 VAL B 738 -1 N ASP B 736 O THR B 744 LINK C GLU A 554 N MSE A 555 1555 1555 1.32 LINK C MSE A 555 N GLY A 556 1555 1555 1.33 LINK C VAL A 562 N MSE A 563 1555 1555 1.33 LINK C MSE A 563 N VAL A 564 1555 1555 1.33 LINK C GLU B 554 N MSE B 555 1555 1555 1.33 LINK C MSE B 555 N GLY B 556 1555 1555 1.33 LINK C VAL B 562 N MSE B 563 1555 1555 1.33 LINK C MSE B 563 N VAL B 564 1555 1555 1.34 LINK OD1 ASN A 646 MG MG A 802 1555 1555 2.02 LINK O1G ATP A 801 MG MG A 802 1555 1555 1.94 LINK OD1 ASN B 646 MG MG B 802 1555 1555 2.09 LINK O3G ATP B 801 MG MG B 802 1555 1555 2.03 CRYST1 84.851 84.851 346.060 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011785 0.006804 0.000000 0.00000 SCALE2 0.000000 0.013609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002890 0.00000 CONECT 63 70 CONECT 70 63 71 CONECT 71 70 72 74 CONECT 72 71 73 78 CONECT 73 72 CONECT 74 71 75 CONECT 75 74 76 CONECT 76 75 77 CONECT 77 76 CONECT 78 72 CONECT 124 129 CONECT 129 124 130 CONECT 130 129 131 133 CONECT 131 130 132 137 CONECT 132 131 CONECT 133 130 134 CONECT 134 133 135 CONECT 135 134 136 CONECT 136 135 CONECT 137 131 CONECT 802 3136 CONECT 1581 1588 CONECT 1588 1581 1589 CONECT 1589 1588 1590 1592 CONECT 1590 1589 1591 1596 CONECT 1591 1590 CONECT 1592 1589 1593 CONECT 1593 1592 1594 CONECT 1594 1593 1595 CONECT 1595 1594 CONECT 1596 1590 CONECT 1642 1647 CONECT 1647 1642 1648 CONECT 1648 1647 1649 1651 CONECT 1649 1648 1650 1655 CONECT 1650 1649 CONECT 1651 1648 1652 CONECT 1652 1651 1653 CONECT 1653 1652 1654 CONECT 1654 1653 CONECT 1655 1649 CONECT 2320 3180 CONECT 3093 3094 3095 3096 3100 CONECT 3094 3093 3136 CONECT 3095 3093 CONECT 3096 3093 CONECT 3097 3098 3099 3100 3104 CONECT 3098 3097 CONECT 3099 3097 CONECT 3100 3093 3097 CONECT 3101 3102 3103 3104 3105 CONECT 3102 3101 CONECT 3103 3101 CONECT 3104 3097 3101 CONECT 3105 3101 3106 CONECT 3106 3105 3107 3124 3125 CONECT 3107 3106 3108 3109 3126 CONECT 3108 3107 3113 CONECT 3109 3107 3110 3111 3127 CONECT 3110 3109 3128 CONECT 3111 3109 3112 3113 3129 CONECT 3112 3111 3130 CONECT 3113 3108 3111 3114 3131 CONECT 3114 3113 3115 3123 CONECT 3115 3114 3116 3132 CONECT 3116 3115 3117 CONECT 3117 3116 3118 3123 CONECT 3118 3117 3119 3120 CONECT 3119 3118 3133 3134 CONECT 3120 3118 3121 CONECT 3121 3120 3122 3135 CONECT 3122 3121 3123 CONECT 3123 3114 3117 3122 CONECT 3124 3106 CONECT 3125 3106 CONECT 3126 3107 CONECT 3127 3109 CONECT 3128 3110 CONECT 3129 3111 CONECT 3130 3112 CONECT 3131 3113 CONECT 3132 3115 CONECT 3133 3119 CONECT 3134 3119 CONECT 3135 3121 CONECT 3136 802 3094 CONECT 3137 3138 3139 3140 3144 CONECT 3138 3137 CONECT 3139 3137 CONECT 3140 3137 3180 CONECT 3141 3142 3143 3144 3148 CONECT 3142 3141 CONECT 3143 3141 CONECT 3144 3137 3141 CONECT 3145 3146 3147 3148 3149 CONECT 3146 3145 CONECT 3147 3145 CONECT 3148 3141 3145 CONECT 3149 3145 3150 CONECT 3150 3149 3151 3168 3169 CONECT 3151 3150 3152 3153 3170 CONECT 3152 3151 3157 CONECT 3153 3151 3154 3155 3171 CONECT 3154 3153 3172 CONECT 3155 3153 3156 3157 3173 CONECT 3156 3155 3174 CONECT 3157 3152 3155 3158 3175 CONECT 3158 3157 3159 3167 CONECT 3159 3158 3160 3176 CONECT 3160 3159 3161 CONECT 3161 3160 3162 3167 CONECT 3162 3161 3163 3164 CONECT 3163 3162 3177 3178 CONECT 3164 3162 3165 CONECT 3165 3164 3166 3179 CONECT 3166 3165 3167 CONECT 3167 3158 3161 3166 CONECT 3168 3150 CONECT 3169 3150 CONECT 3170 3151 CONECT 3171 3153 CONECT 3172 3154 CONECT 3173 3155 CONECT 3174 3156 CONECT 3175 3157 CONECT 3176 3159 CONECT 3177 3163 CONECT 3178 3163 CONECT 3179 3165 CONECT 3180 2320 3140 MASTER 458 0 8 13 14 0 0 6 3158 2 130 42 END