HEADER VIRAL PROTEIN/INHIBITOR 25-NOV-22 8F9Z TITLE CRYSTAL STRUCTURE OF CLADE A/E 93TH057 HIV-1 GP120 CORE IN COMPLEX TITLE 2 WITH NBD-14204, AN HIV-1 GP120 ANTAGONIST CAVEAT 8F9Z THIS ENTRY INCLUDES AT LEAST ONE PAIR OF ATOMS WITH CAVEAT 2 8F9Z PHYSICALLY UNREALISTIC INTERATOMIC DISTANCE, 0.95. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 GP120 CORE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: CLADE A/E 93TH057; SOURCE 6 GENE: HIV-1 ENV; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: 293F; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS HIV-1, NBD-14204, SMALL MOLECULES, CD4-GP120 BINDING INHIBITOR, KEYWDS 2 ANTAGONIST, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.D.KWON,P.D.KWONG REVDAT 2 20-SEP-23 8F9Z 1 REMARK REVDAT 1 11-JAN-23 8F9Z 0 JRNL AUTH F.CURRELI,Y.D.KWON,I.NICOLAU,G.BURGOS,A.ALTIERI,A.V.KURKIN, JRNL AUTH 2 R.VERARDI,P.D.KWONG,A.K.DEBNATH JRNL TITL ANTIVIRAL ACTIVITY AND CRYSTAL STRUCTURES OF HIV-1 GP120 JRNL TITL 2 ANTAGONISTS. JRNL REF INT J MOL SCI V. 23 2022 JRNL REFN ESSN 1422-0067 JRNL PMID 36555641 JRNL DOI 10.3390/IJMS232415999 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 24631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4400 - 4.0400 0.97 3172 172 0.1902 0.2004 REMARK 3 2 4.0400 - 3.2100 1.00 3117 162 0.1683 0.1968 REMARK 3 3 3.2100 - 2.8000 1.00 3086 163 0.1844 0.2235 REMARK 3 4 2.8000 - 2.5500 1.00 3074 166 0.1788 0.2212 REMARK 3 5 2.5500 - 2.3600 1.00 3070 164 0.1859 0.2546 REMARK 3 6 2.3600 - 2.2300 0.98 2969 159 0.1807 0.2327 REMARK 3 7 2.2300 - 2.1100 0.93 2815 148 0.1896 0.2269 REMARK 3 8 2.1100 - 2.0200 0.61 1871 96 0.1894 0.2433 REMARK 3 9 2.0200 - 1.9400 0.07 215 12 0.2101 0.1971 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 NULL REMARK 3 ANGLE : 0.767 NULL REMARK 3 CHIRALITY : 0.053 447 REMARK 3 PLANARITY : 0.006 487 REMARK 3 DIHEDRAL : 10.368 403 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI 44 THROUGH 353 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0942 -11.0172 14.9023 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.0999 REMARK 3 T33: 0.0881 T12: -0.0204 REMARK 3 T13: 0.0437 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.3493 L22: 2.0308 REMARK 3 L33: 1.2137 L12: -0.9262 REMARK 3 L13: 0.6637 L23: -0.4449 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: -0.0656 S13: -0.1986 REMARK 3 S21: -0.0122 S22: 0.1049 S23: 0.2066 REMARK 3 S31: 0.0091 S32: -0.1774 S33: -0.0159 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8F9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000270256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.82100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-14% PEG3350, 5% ISOPROPANOL, 0.1M REMARK 280 HEPES, 7.4, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.59800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.95350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.79600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.95350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.59800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.79600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 318 REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 GLY A 321 REMARK 465 SER A 322 REMARK 465 GLY A 323 REMARK 465 GLY A 403 REMARK 465 ASN A 404 REMARK 465 GLU A 405 REMARK 465 THR A 406 REMARK 465 MET A 407 REMARK 465 LYS A 408 REMARK 465 GLY A 409 REMARK 465 CYS A 410 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 59 O HOH A 601 0.95 REMARK 500 H ASN A 474 O HOH A 603 1.13 REMARK 500 HN2 NAG A 505 O HOH A 610 1.34 REMARK 500 HZ3 LYS A 59 O HOH A 608 1.44 REMARK 500 HZ3 LYS A 337 O HOH A 604 1.44 REMARK 500 H GLN A 82 O HOH A 611 1.53 REMARK 500 HH TYR A 435 O HOH A 620 1.55 REMARK 500 HH11 ARG A 379 O HOH A 618 1.55 REMARK 500 O HOH A 802 O HOH A 866 1.62 REMARK 500 NZ LYS A 59 O HOH A 601 1.82 REMARK 500 NE2 GLN A 246 O HOH A 602 1.83 REMARK 500 N ASN A 474 O HOH A 603 1.91 REMARK 500 NZ LYS A 337 O HOH A 604 1.95 REMARK 500 O SER A 365 O HOH A 605 2.00 REMARK 500 O HOH A 875 O HOH A 877 2.01 REMARK 500 O HOH A 614 O HOH A 689 2.05 REMARK 500 OD1 ASP A 325 O HOH A 606 2.05 REMARK 500 O HOH A 758 O HOH A 833 2.06 REMARK 500 OE2 GLU A 83 O HOH A 607 2.07 REMARK 500 O HOH A 635 O HOH A 844 2.07 REMARK 500 NZ LYS A 59 O HOH A 608 2.11 REMARK 500 O PRO A 81 O HOH A 609 2.14 REMARK 500 N2 NAG A 505 O HOH A 610 2.14 REMARK 500 N GLN A 82 O HOH A 611 2.14 REMARK 500 N04 XKW A 507 O HOH A 612 2.15 REMARK 500 OE1 GLU A 293 O HOH A 613 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 211 107.95 -169.40 REMARK 500 GLN A 258 -59.14 68.47 REMARK 500 GLU A 268 -93.07 -116.47 REMARK 500 ASN A 276 99.70 -167.61 REMARK 500 PHE A 391 55.52 -118.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 877 DISTANCE = 5.82 ANGSTROMS DBREF1 8F9Z A 44 492 UNP A0A0M3KKW8_HUMAN DBREF2 8F9Z A A0A0M3KKW8 1 353 SEQADV 8F9Z SER A 375 UNP A0A0M3KKW HIS 242 ENGINEERED MUTATION SEQRES 1 A 353 VAL TRP LYS ASP ALA ASP THR THR LEU PHE CYS ALA SER SEQRES 2 A 353 ASP ALA LYS ALA HIS GLU THR GLU VAL HIS ASN VAL TRP SEQRES 3 A 353 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 A 353 GLU ILE HIS LEU GLU ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 A 353 TRP LYS ASN ASN MET VAL GLU GLN MET GLN GLU ASP VAL SEQRES 6 A 353 ILE SER LEU TRP ASP GLN SER LEU GLN PRO CYS VAL LYS SEQRES 7 A 353 LEU THR GLY GLY SER VAL ILE LYS GLN ALA CYS PRO LYS SEQRES 8 A 353 ILE SER PHE ASP PRO ILE PRO ILE HIS TYR CYS THR PRO SEQRES 9 A 353 ALA GLY TYR VAL ILE LEU LYS CYS ASN ASP LYS ASN PHE SEQRES 10 A 353 ASN GLY THR GLY PRO CYS LYS ASN VAL SER SER VAL GLN SEQRES 11 A 353 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 A 353 LEU LEU ASN GLY SER LEU ALA GLU GLU GLU ILE ILE ILE SEQRES 13 A 353 ARG SER GLU ASN LEU THR ASN ASN ALA LYS THR ILE ILE SEQRES 14 A 353 VAL HIS LEU ASN LYS SER VAL GLU ILE ASN CYS THR ARG SEQRES 15 A 353 PRO SER ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 A 353 LYS ALA TYR CYS GLU ILE ASN GLY THR LYS TRP ASN LYS SEQRES 17 A 353 VAL LEU LYS GLN VAL THR GLU LYS LEU LYS GLU HIS PHE SEQRES 18 A 353 ASN ASN LYS THR ILE ILE PHE GLN PRO PRO SER GLY GLY SEQRES 19 A 353 ASP LEU GLU ILE THR MET HIS SER PHE ASN CYS ARG GLY SEQRES 20 A 353 GLU PHE PHE TYR CYS ASN THR THR GLN LEU PHE ASN ASN SEQRES 21 A 353 THR CYS ILE GLY ASN GLU THR MET LYS GLY CYS ASN GLY SEQRES 22 A 353 THR ILE THR LEU PRO CYS LYS ILE LYS GLN ILE ILE ASN SEQRES 23 A 353 MET TRP GLN GLY THR GLY GLN ALA MET TYR ALA PRO PRO SEQRES 24 A 353 ILE ASP GLY LYS ILE ASN CYS VAL SER ASN ILE THR GLY SEQRES 25 A 353 ILE LEU LEU THR ARG ASP GLY GLY ALA ASN ASN THR SER SEQRES 26 A 353 ASN GLU THR PHE ARG PRO GLY GLY GLY ASN ILE LYS ASP SEQRES 27 A 353 ASN TRP ARG SER GLU LEU TYR LYS TYR LYS VAL VAL GLN SEQRES 28 A 353 ILE GLU HET NAG A 501 27 HET NAG A 502 27 HET NAG A 503 27 HET NAG A 504 27 HET NAG A 505 27 HET NAG A 506 27 HET XKW A 507 44 HET EPE A 508 32 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM XKW (5M)-N-{(1S)-2-AMINO-1-[5-(HYDROXYMETHYL)-1,3-THIAZOL- HETNAM 2 XKW 2-YL]ETHYL}-5-[5-(TRIFLUOROMETHYL)PYRIDIN-2-YL]-1H- HETNAM 3 XKW PYRROLE-2-CARBOXAMIDE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EPE HEPES FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 8 XKW C17 H16 F3 N5 O2 S FORMUL 9 EPE C8 H18 N2 O4 S FORMUL 10 HOH *277(H2 O) HELIX 1 AA1 GLU A 64 CYS A 74 1 11 HELIX 2 AA2 ASN A 98 LEU A 116 1 19 HELIX 3 AA3 GLY A 335 PHE A 353 1 19 HELIX 4 AA4 ASP A 368 MET A 373 1 6 HELIX 5 AA5 THR A 387 ILE A 396 5 10 HELIX 6 AA6 ILE A 475 TYR A 484 1 10 SHEET 1 AA1 5 TRP A 45 ASP A 47 0 SHEET 2 AA1 5 TYR A 486 ILE A 491 -1 O GLN A 490 N LYS A 46 SHEET 3 AA1 5 TYR A 223 CYS A 228 -1 N LEU A 226 O LYS A 487 SHEET 4 AA1 5 VAL A 242 VAL A 245 -1 O VAL A 245 N ILE A 225 SHEET 5 AA1 5 ILE A 84 LEU A 86 -1 N LEU A 86 O VAL A 242 SHEET 1 AA2 3 VAL A 75 PRO A 76 0 SHEET 2 AA2 3 PHE A 53 SER A 56 1 N CYS A 54 O VAL A 75 SHEET 3 AA2 3 HIS A 216 CYS A 218 -1 O HIS A 216 N ALA A 55 SHEET 1 AA3 2 GLU A 91 ASN A 94 0 SHEET 2 AA3 2 THR A 236 CYS A 239 -1 O CYS A 239 N GLU A 91 SHEET 1 AA4 4 SER A 199 LYS A 202 0 SHEET 2 AA4 4 VAL A 120 THR A 123 -1 N LYS A 121 O ILE A 201 SHEET 3 AA4 4 GLN A 432 MET A 434 -1 O GLN A 432 N LEU A 122 SHEET 4 AA4 4 ILE A 423 ASN A 425 -1 N ILE A 424 O ALA A 433 SHEET 1 AA5 5 LEU A 259 LEU A 261 0 SHEET 2 AA5 5 ILE A 443 ARG A 456 -1 O THR A 450 N LEU A 260 SHEET 3 AA5 5 ILE A 284 ARG A 298 -1 N VAL A 292 O ILE A 449 SHEET 4 AA5 5 ASN A 465 PRO A 470 0 SHEET 5 AA5 5 THR A 358 PHE A 361 1 N THR A 358 O GLU A 466 SHEET 1 AA6 7 ILE A 271 ARG A 273 0 SHEET 2 AA6 7 ILE A 284 ARG A 298 -1 O HIS A 287 N ILE A 271 SHEET 3 AA6 7 ILE A 443 ARG A 456 -1 O ILE A 449 N VAL A 292 SHEET 4 AA6 7 LYS A 328 ASN A 334 0 SHEET 5 AA6 7 THR A 413 LYS A 421 -1 O ILE A 414 N ILE A 333 SHEET 6 AA6 7 GLU A 381 CYS A 385 -1 N PHE A 382 O LYS A 421 SHEET 7 AA6 7 HIS A 374 CYS A 378 -1 N HIS A 374 O CYS A 385 SSBOND 1 CYS A 54 CYS A 74 1555 1555 2.09 SSBOND 2 CYS A 119 CYS A 205 1555 1555 2.05 SSBOND 3 CYS A 218 CYS A 247 1555 1555 2.09 SSBOND 4 CYS A 228 CYS A 239 1555 1555 2.07 SSBOND 5 CYS A 296 CYS A 331 1555 1555 2.07 SSBOND 6 CYS A 378 CYS A 445 1555 1555 2.04 SSBOND 7 CYS A 385 CYS A 418 1555 1555 2.04 LINK ND2 ASN A 234 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 262 C1 NAG A 502 1555 1555 1.47 LINK ND2 ASN A 276 C1 NAG A 503 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG A 504 1555 1555 1.44 LINK ND2 ASN A 295 C1 NAG A 505 1555 1555 1.44 LINK ND2 ASN A 386 C1 NAG A 506 1555 1555 1.44 CRYST1 65.196 67.592 87.907 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014795 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011376 0.00000