HEADER RNA 29-NOV-22 8FB3 TITLE PREQ1-1 (TYPE-1) RIBOSWITCH WITH STACKED METABOLITES AND A C10-G34 TITLE 2 BASE PAIR IN THE EXPRESSION PLATFORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (34-MER) RIBOSWITCH; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: CARNOBACTERIUM ANTARCTICUM; SOURCE 4 ORGANISM_TAXID: 2126436 KEYWDS RIBOSWITCH, SHINE-DALGARNO SEQUENCE, PSEUDOKNOT, A-AMINO KISSING KEYWDS 2 MOTIF, QUINTUPLE-BASE TRANSITION MOTIF, RNA EXPDTA X-RAY DIFFRACTION AUTHOR J.E.WEDEKIND,G.M.SCHROEDER,J.L.JENKINS REVDAT 3 22-MAY-24 8FB3 1 REMARK REVDAT 2 29-MAR-23 8FB3 1 JRNL REVDAT 1 22-FEB-23 8FB3 0 JRNL AUTH G.M.SCHROEDER,O.AKINYEMI,J.MALIK,C.M.FOCHT,E.M.PRITCHETT, JRNL AUTH 2 C.D.BAKER,J.P.MCSALLY,J.L.JENKINS,D.H.MATHEWS,J.E.WEDEKIND JRNL TITL A RIBOSWITCH SEPARATED FROM ITS RIBOSOME-BINDING SITE STILL JRNL TITL 2 REGULATES TRANSLATION. JRNL REF NUCLEIC ACIDS RES. V. 51 2464 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36762498 JRNL DOI 10.1093/NAR/GKAD056 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.M.SCHROEDER,C.E.CAVENDER,M.E.BLAU,J.L.JENKINS,D.H.MATHEWS, REMARK 1 AUTH 2 J.E.WEDEKIND REMARK 1 TITL A SMALL RNA THAT COOPERATIVELY SENSES TWO STACKED REMARK 1 TITL 2 METABOLITES IN ONE POCKET FOR GENE CONTROL. REMARK 1 REF NAT COMMUN V. 13 199 2022 REMARK 1 REFN ESSN 2041-1723 REMARK 1 PMID 35017488 REMARK 1 DOI 10.1101/512780V3 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.E.CAVENDER,G.M.SCHROEDER,D.H.MATHEWS,J.E.WEDEKIND REMARK 1 TITL ISOTHERMAL TITRATION CALORIMETRY ANALYSIS OF A COOPERATIVE REMARK 1 TITL 2 RIBOSWITCH USING AN INTERDEPENDENT-SITES BINDING MODEL. REMARK 1 REF METHODS MOL BIOL V.2568 53 2023 REMARK 1 REFN ISSN 1940-6029 REMARK 1 PMID 36227562 REMARK 1 DOI 10.1016/0003-2697(89)90213-3 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 5478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1600 - 4.7600 0.99 1276 141 0.1818 0.2530 REMARK 3 2 4.7600 - 3.7800 0.99 1247 139 0.2591 0.2491 REMARK 3 3 3.7800 - 3.3000 0.98 1233 138 0.2825 0.2860 REMARK 3 4 3.3000 - 3.0000 0.94 1174 130 0.2906 0.3442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2309 REMARK 3 ANGLE : 0.726 3576 REMARK 3 CHIRALITY : 0.028 469 REMARK 3 PLANARITY : 0.003 100 REMARK 3 DIHEDRAL : 15.685 1121 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3574 -14.2561 -17.1237 REMARK 3 T TENSOR REMARK 3 T11: 1.3792 T22: 0.6008 REMARK 3 T33: 1.4234 T12: -0.1425 REMARK 3 T13: 0.4361 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 6.1803 L22: 4.8658 REMARK 3 L33: 4.0670 L12: 1.9792 REMARK 3 L13: -4.4713 L23: -3.3046 REMARK 3 S TENSOR REMARK 3 S11: 0.1241 S12: 0.0162 S13: 1.1628 REMARK 3 S21: 1.9731 S22: -0.4627 S23: 1.8484 REMARK 3 S31: -1.9469 S32: -0.0227 S33: 0.4274 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1562 -0.1712 -20.1589 REMARK 3 T TENSOR REMARK 3 T11: 1.1634 T22: 1.0288 REMARK 3 T33: 1.7697 T12: -0.4495 REMARK 3 T13: -0.0718 T23: 0.1778 REMARK 3 L TENSOR REMARK 3 L11: 1.3827 L22: 2.4398 REMARK 3 L33: 1.4618 L12: -1.7240 REMARK 3 L13: 1.4080 L23: -1.8320 REMARK 3 S TENSOR REMARK 3 S11: 1.6582 S12: 0.1453 S13: 0.0824 REMARK 3 S21: 3.1371 S22: -1.9859 S23: -0.4876 REMARK 3 S31: -2.0668 S32: 1.2640 S33: 0.8106 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1487 4.0960 -23.2131 REMARK 3 T TENSOR REMARK 3 T11: 1.7609 T22: 0.7728 REMARK 3 T33: 1.5901 T12: 0.3427 REMARK 3 T13: 0.1142 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 5.9284 L22: 3.9783 REMARK 3 L33: 5.7175 L12: 3.3588 REMARK 3 L13: 0.3368 L23: -0.9782 REMARK 3 S TENSOR REMARK 3 S11: 0.8656 S12: -0.5240 S13: 2.8025 REMARK 3 S21: 1.8208 S22: 0.1045 S23: 1.7093 REMARK 3 S31: -0.0634 S32: -1.3016 S33: -0.5403 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2354 -7.7871 -27.1958 REMARK 3 T TENSOR REMARK 3 T11: 1.4497 T22: 1.6235 REMARK 3 T33: 1.4633 T12: 0.0486 REMARK 3 T13: 0.4998 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 7.7281 L22: 2.0598 REMARK 3 L33: 7.5295 L12: -7.7300 REMARK 3 L13: 3.4406 L23: 2.8802 REMARK 3 S TENSOR REMARK 3 S11: 2.1062 S12: 1.4741 S13: 1.1186 REMARK 3 S21: 2.8743 S22: -3.7829 S23: 1.6219 REMARK 3 S31: -1.9360 S32: -3.2366 S33: 0.9568 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0455 -15.9547 -21.4785 REMARK 3 T TENSOR REMARK 3 T11: 0.8710 T22: 0.9303 REMARK 3 T33: 1.1738 T12: 0.0553 REMARK 3 T13: 0.2425 T23: 0.3067 REMARK 3 L TENSOR REMARK 3 L11: 9.4821 L22: 2.0267 REMARK 3 L33: 1.2994 L12: -0.0637 REMARK 3 L13: 3.0887 L23: 2.5432 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: 1.6207 S13: 0.3635 REMARK 3 S21: 1.6983 S22: -0.3139 S23: -2.2036 REMARK 3 S31: -0.9130 S32: -0.6785 S33: -0.1559 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5908 -18.8555 -10.3692 REMARK 3 T TENSOR REMARK 3 T11: 2.1739 T22: 1.2444 REMARK 3 T33: 1.4599 T12: -0.4067 REMARK 3 T13: -0.0614 T23: 0.2377 REMARK 3 L TENSOR REMARK 3 L11: 4.8525 L22: 2.0347 REMARK 3 L33: 2.1130 L12: -3.5159 REMARK 3 L13: -1.5890 L23: 9.4303 REMARK 3 S TENSOR REMARK 3 S11: -0.6955 S12: -1.9118 S13: 0.1960 REMARK 3 S21: 5.0087 S22: -1.2159 S23: 1.3347 REMARK 3 S31: 0.4567 S32: 0.1337 S33: 1.8882 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0698 -8.7381 -19.7750 REMARK 3 T TENSOR REMARK 3 T11: 1.0446 T22: 1.1465 REMARK 3 T33: 1.5474 T12: -0.0758 REMARK 3 T13: -0.1860 T23: 0.1161 REMARK 3 L TENSOR REMARK 3 L11: 2.1565 L22: 2.0847 REMARK 3 L33: 2.0244 L12: 0.6531 REMARK 3 L13: -4.1600 L23: -1.0580 REMARK 3 S TENSOR REMARK 3 S11: 1.6035 S12: -1.8044 S13: 0.6480 REMARK 3 S21: 1.0885 S22: -0.5119 S23: -2.0114 REMARK 3 S31: -1.7841 S32: 1.8059 S33: -1.1468 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0900 -7.9151 -44.5662 REMARK 3 T TENSOR REMARK 3 T11: 1.1188 T22: 1.1821 REMARK 3 T33: 1.6601 T12: 0.1851 REMARK 3 T13: -0.0124 T23: -0.2490 REMARK 3 L TENSOR REMARK 3 L11: 2.0309 L22: 2.0064 REMARK 3 L33: 2.0268 L12: 1.6892 REMARK 3 L13: 2.0397 L23: 2.0293 REMARK 3 S TENSOR REMARK 3 S11: -0.7494 S12: -0.0730 S13: -3.1617 REMARK 3 S21: -1.1376 S22: 1.6215 S23: 2.5331 REMARK 3 S31: -0.0554 S32: 0.2321 S33: -0.7763 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5483 1.0027 -31.8321 REMARK 3 T TENSOR REMARK 3 T11: 1.0544 T22: 1.2062 REMARK 3 T33: 0.9252 T12: 0.3296 REMARK 3 T13: 0.0241 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 2.1706 L22: 9.9111 REMARK 3 L33: 2.1767 L12: -6.1650 REMARK 3 L13: -4.8125 L23: -0.7099 REMARK 3 S TENSOR REMARK 3 S11: -0.6124 S12: -2.1372 S13: -1.3787 REMARK 3 S21: 0.0132 S22: 0.8157 S23: 0.2796 REMARK 3 S31: -0.7386 S32: 0.8894 S33: 0.1452 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0380 7.0909 -32.9725 REMARK 3 T TENSOR REMARK 3 T11: 0.7965 T22: 1.0183 REMARK 3 T33: 1.3516 T12: 0.2951 REMARK 3 T13: 0.1346 T23: -0.2045 REMARK 3 L TENSOR REMARK 3 L11: 1.9215 L22: 5.5024 REMARK 3 L33: 7.1508 L12: 2.8105 REMARK 3 L13: -3.3326 L23: -2.0161 REMARK 3 S TENSOR REMARK 3 S11: -0.5925 S12: 0.7668 S13: 1.9408 REMARK 3 S21: 0.6759 S22: -1.5748 S23: 1.8379 REMARK 3 S31: -0.6206 S32: -2.0946 S33: 1.5934 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 13 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1788 0.8761 -46.0604 REMARK 3 T TENSOR REMARK 3 T11: 1.1512 T22: 0.8979 REMARK 3 T33: 1.3103 T12: -0.0328 REMARK 3 T13: 0.0655 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 6.0387 L22: 2.0331 REMARK 3 L33: 7.5800 L12: -2.1529 REMARK 3 L13: 3.3865 L23: 4.7952 REMARK 3 S TENSOR REMARK 3 S11: -0.5634 S12: 1.0020 S13: 0.8314 REMARK 3 S21: 0.1062 S22: -0.7893 S23: 2.1903 REMARK 3 S31: 2.3674 S32: -0.5004 S33: 0.7733 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4590 0.9385 -41.1713 REMARK 3 T TENSOR REMARK 3 T11: 1.0110 T22: 1.3338 REMARK 3 T33: 0.7697 T12: 0.2028 REMARK 3 T13: -0.0663 T23: -0.1179 REMARK 3 L TENSOR REMARK 3 L11: 8.0615 L22: 6.8589 REMARK 3 L33: 2.0693 L12: -1.5697 REMARK 3 L13: 0.9876 L23: -1.2100 REMARK 3 S TENSOR REMARK 3 S11: 0.1665 S12: -0.0305 S13: 0.1773 REMARK 3 S21: 0.0564 S22: 0.0227 S23: -0.8574 REMARK 3 S31: 1.1706 S32: 2.2459 S33: -0.2645 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3280 1.6725 -31.7710 REMARK 3 T TENSOR REMARK 3 T11: 0.7886 T22: 1.9958 REMARK 3 T33: 1.1761 T12: 0.4297 REMARK 3 T13: -0.0706 T23: -0.0858 REMARK 3 L TENSOR REMARK 3 L11: 3.8644 L22: 2.0349 REMARK 3 L33: 6.7746 L12: -3.7494 REMARK 3 L13: -0.6871 L23: 0.8012 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: -1.8844 S13: 0.8919 REMARK 3 S21: -0.3476 S22: -0.0659 S23: -2.4396 REMARK 3 S31: 1.2514 S32: 2.1640 S33: -0.1955 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1763 10.8983 -40.4568 REMARK 3 T TENSOR REMARK 3 T11: 0.8314 T22: 0.9236 REMARK 3 T33: 1.3460 T12: 0.0455 REMARK 3 T13: -0.1478 T23: -0.0605 REMARK 3 L TENSOR REMARK 3 L11: 9.7887 L22: 2.1727 REMARK 3 L33: 8.1996 L12: -2.9508 REMARK 3 L13: -3.4061 L23: -3.5496 REMARK 3 S TENSOR REMARK 3 S11: 0.5479 S12: -0.1825 S13: 3.7469 REMARK 3 S21: -0.7436 S22: -0.4389 S23: 0.0090 REMARK 3 S31: -0.9263 S32: -0.4983 S33: 0.4613 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6546 -6.4359 -2.4741 REMARK 3 T TENSOR REMARK 3 T11: 1.4689 T22: 1.3769 REMARK 3 T33: 1.0758 T12: 0.4835 REMARK 3 T13: 0.3693 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.4398 L22: 4.5270 REMARK 3 L33: 1.9419 L12: 0.7601 REMARK 3 L13: 1.6452 L23: 0.0352 REMARK 3 S TENSOR REMARK 3 S11: 0.5202 S12: -0.8730 S13: -0.2683 REMARK 3 S21: -0.3497 S22: -0.5767 S23: -0.1997 REMARK 3 S31: 0.4138 S32: 0.1473 S33: 0.4442 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 5 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5828 6.8209 -14.5117 REMARK 3 T TENSOR REMARK 3 T11: 1.6925 T22: 1.4227 REMARK 3 T33: 0.7976 T12: -0.1910 REMARK 3 T13: -0.2745 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 2.4559 L22: 4.3972 REMARK 3 L33: 2.9274 L12: 1.7690 REMARK 3 L13: -1.0016 L23: 0.4019 REMARK 3 S TENSOR REMARK 3 S11: -0.5654 S12: 1.7173 S13: 0.3688 REMARK 3 S21: -3.0408 S22: 0.7547 S23: 1.4431 REMARK 3 S31: -0.1548 S32: 0.4570 S33: -0.4812 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 10 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1928 7.3038 -10.0238 REMARK 3 T TENSOR REMARK 3 T11: 0.9920 T22: 1.1878 REMARK 3 T33: 1.0482 T12: 0.0364 REMARK 3 T13: 0.0082 T23: -0.1220 REMARK 3 L TENSOR REMARK 3 L11: 6.7405 L22: 2.0308 REMARK 3 L33: 4.5212 L12: 3.8186 REMARK 3 L13: -2.5943 L23: -0.0495 REMARK 3 S TENSOR REMARK 3 S11: 0.6894 S12: 0.8242 S13: -0.4307 REMARK 3 S21: -0.2584 S22: -0.9273 S23: -2.3995 REMARK 3 S31: -0.0793 S32: 1.3325 S33: 0.0327 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 14 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4171 4.1544 -0.7891 REMARK 3 T TENSOR REMARK 3 T11: 1.1332 T22: 1.0155 REMARK 3 T33: 0.9260 T12: 0.0544 REMARK 3 T13: -0.0041 T23: -0.1214 REMARK 3 L TENSOR REMARK 3 L11: 9.7974 L22: 6.4234 REMARK 3 L33: 9.3693 L12: 2.7812 REMARK 3 L13: 5.2044 L23: 0.4296 REMARK 3 S TENSOR REMARK 3 S11: 0.4077 S12: 0.3655 S13: -0.2557 REMARK 3 S21: -0.4358 S22: 0.1603 S23: -0.6912 REMARK 3 S31: 1.5654 S32: 0.0828 S33: -0.3350 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 20 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9683 -3.6517 -6.6284 REMARK 3 T TENSOR REMARK 3 T11: 1.2907 T22: 1.3543 REMARK 3 T33: 0.7969 T12: 0.0102 REMARK 3 T13: -0.1262 T23: -0.0692 REMARK 3 L TENSOR REMARK 3 L11: 6.6553 L22: 9.3342 REMARK 3 L33: 5.6244 L12: 0.2535 REMARK 3 L13: 0.8066 L23: -6.2297 REMARK 3 S TENSOR REMARK 3 S11: -0.6497 S12: -1.1254 S13: 0.0340 REMARK 3 S21: -0.3885 S22: 2.2944 S23: 1.3785 REMARK 3 S31: 2.5008 S32: -1.9737 S33: -1.6631 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4569 -2.5486 -15.4590 REMARK 3 T TENSOR REMARK 3 T11: 1.3510 T22: 2.5427 REMARK 3 T33: 0.9780 T12: 0.1774 REMARK 3 T13: -0.5498 T23: -0.1812 REMARK 3 L TENSOR REMARK 3 L11: 9.4119 L22: 5.9495 REMARK 3 L33: 1.9837 L12: 2.7032 REMARK 3 L13: -1.8264 L23: 1.9703 REMARK 3 S TENSOR REMARK 3 S11: -0.2894 S12: -0.2828 S13: 0.6149 REMARK 3 S21: -1.9849 S22: -2.8614 S23: -0.0822 REMARK 3 S31: 4.2111 S32: 2.1372 S33: 2.3502 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 29 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1058 12.2662 -6.8296 REMARK 3 T TENSOR REMARK 3 T11: 1.0711 T22: 0.8399 REMARK 3 T33: 1.3415 T12: 0.0330 REMARK 3 T13: -0.2177 T23: 0.2417 REMARK 3 L TENSOR REMARK 3 L11: 7.0103 L22: 5.3007 REMARK 3 L33: 8.2350 L12: -0.4786 REMARK 3 L13: 2.1573 L23: 2.1668 REMARK 3 S TENSOR REMARK 3 S11: -0.2008 S12: 0.5854 S13: -0.8889 REMARK 3 S21: -1.1075 S22: 0.3768 S23: 0.8572 REMARK 3 S31: -2.0225 S32: 0.5062 S33: 0.0453 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NCS RESTRAINTS WERE APPLIED THROUGHOUT REMARK 3 EXCEPT FOR THE LAST CYCLE OF REFINEMENT. REMARK 4 REMARK 4 8FB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000270322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : FLAT SI RH COATED M0, REMARK 200 KIRKPATRICK-BAEZ FLAT BENT SI M1 REMARK 200 & M2 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5588 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (1.20.1_4487) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 8000, 0.2 M AMMONIUM ACETATE, REMARK 280 0.01 M MAGNESIUM ACETATE TETRAHYDRATE, AND 0.05 M SODIUM REMARK 280 CACODYLATE PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.80600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U B 23 REMARK 465 A B 24 REMARK 465 A B 25 REMARK 465 A B 26 REMARK 465 U C 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U B 1 O5' C5' C4' O4' C3' C2' O2' REMARK 470 U B 1 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B 1 C5 C6 REMARK 470 A B 22 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A B 22 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A B 22 N1 C2 N3 C4 REMARK 470 A C 24 P OP1 OP2 O5' C5' C4' O4' REMARK 470 A C 24 C3' C2' O2' C1' N9 C8 N7 REMARK 470 A C 24 C5 C6 N6 N1 C2 N3 C4 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 12 OP1 REMARK 620 2 C A 13 OP1 68.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 32 OP1 REMARK 620 2 A B 12 OP1 105.3 REMARK 620 3 C B 13 OP1 127.2 73.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A C 12 OP1 REMARK 620 2 C C 13 OP1 70.9 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VUH RELATED DB: PDB REMARK 900 PREQ1 (CLASS 1 TYPE 2) APO REMARK 900 RELATED ID: 6VUI RELATED DB: PDB REMARK 900 PREQ1 (CLASS 1 TYPE 2) BOUND DBREF 8FB3 A 1 34 PDB 8FB3 8FB3 1 34 DBREF 8FB3 B 1 34 PDB 8FB3 8FB3 1 34 DBREF 8FB3 C 1 34 PDB 8FB3 8FB3 1 34 SEQRES 1 A 34 U G U G G U U C G C A A C SEQRES 2 A 34 C A U C C C A C A U A A A SEQRES 3 A 34 A A A A C U A G SEQRES 1 B 34 U G U G G U U C G C A A C SEQRES 2 B 34 C A U C C C A C A U A A A SEQRES 3 B 34 A A A A C U A G SEQRES 1 C 34 U G U G G U U C G C A A C SEQRES 2 C 34 C A U C C C A C A U A A A SEQRES 3 C 34 A A A A C U A G HET PRF A 101 13 HET PRF A 102 13 HET MG A 103 1 HET MG A 104 1 HET PRF B 101 13 HET PRF B 102 13 HET PRF C 101 13 HET PRF C 102 13 HET MG C 103 1 HETNAM PRF 7-DEAZA-7-AMINOMETHYL-GUANINE HETNAM MG MAGNESIUM ION FORMUL 4 PRF 6(C7 H9 N5 O) FORMUL 6 MG 3(MG 2+) FORMUL 13 HOH *6(H2 O) LINK OP1 A A 12 MG MG A 104 1555 1555 2.06 LINK OP1 C A 13 MG MG A 104 1555 1555 2.62 LINK OP1 U A 32 MG MG A 103 1555 1555 2.40 LINK MG MG A 103 OP1 A B 12 1555 1555 2.18 LINK MG MG A 103 OP1 C B 13 1555 1555 2.31 LINK OP1 A C 12 MG MG C 103 1555 1555 2.90 LINK OP1 C C 13 MG MG C 103 1555 1555 2.42 CRYST1 41.867 67.612 50.589 90.00 100.53 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023885 0.000000 0.004440 0.00000 SCALE2 0.000000 0.014790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020106 0.00000