HEADER DNA 29-NOV-22 8FB4 TITLE STRUCTURE OF AN ALTERNATING AT 16-MER BOUND BY DIAMIDINE DB1476: 5'- TITLE 2 GCTGGATATATCCAGC-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*TP*GP*GP*AP*TP*AP*TP*AP*TP*CP*CP*AP*GP*C)- COMPND 3 3'); COMPND 4 CHAIN: A, B, C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 4 ORGANISM_TAXID: 2853804 KEYWDS DNA, AT SEQUENCE, MINOR GROOVE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.TERRELL,E.N.OGBONNA,W.D.WILSON REVDAT 2 06-SEP-23 8FB4 1 JRNL REVDAT 1 22-FEB-23 8FB4 0 JRNL AUTH E.N.OGBONNA,A.PAUL,A.A.FARAHAT,J.R.TERRELL,E.MINEVA, JRNL AUTH 2 V.OGBONNA,D.W.BOYKIN,W.D.WILSON JRNL TITL X-RAY STRUCTURE CHARACTERIZATION OF THE SELECTIVE JRNL TITL 2 RECOGNITION OF AT BASE PAIR SEQUENCES. JRNL REF ACS BIO MED CHEM AU V. 3 335 2023 JRNL REFN ESSN 2694-2437 JRNL PMID 37599788 JRNL DOI 10.1021/ACSBIOMEDCHEMAU.3C00002 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.261 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.450 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4100 - 3.5900 0.99 1709 159 0.2626 0.3006 REMARK 3 2 3.5900 - 2.8500 0.99 1592 147 0.2524 0.2813 REMARK 3 3 2.8500 - 2.4900 1.00 1590 146 0.2477 0.3280 REMARK 3 4 2.4900 - 2.2600 1.00 1549 147 0.2751 0.2668 REMARK 3 5 2.2600 - 2.1000 1.00 1561 139 0.2554 0.2641 REMARK 3 6 2.1000 - 1.9800 1.00 1543 142 0.2581 0.3002 REMARK 3 7 1.9800 - 1.8800 1.00 1555 149 0.2478 0.3163 REMARK 3 8 1.8800 - 1.8000 1.00 1520 142 0.2504 0.2969 REMARK 3 9 1.8000 - 1.7300 0.99 1523 141 0.2221 0.2325 REMARK 3 10 1.7300 - 1.6700 0.98 1499 139 0.2464 0.2670 REMARK 3 11 1.6700 - 1.6200 0.98 1475 140 0.2397 0.2943 REMARK 3 12 1.6100 - 1.5700 0.99 1543 134 0.2698 0.3044 REMARK 3 13 1.5700 - 1.5300 0.99 1488 135 0.3064 0.3723 REMARK 3 14 1.5300 - 1.4900 0.99 1502 138 0.3587 0.3986 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.231 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.741 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1152 REMARK 3 ANGLE : 1.531 1766 REMARK 3 CHIRALITY : 0.074 189 REMARK 3 PLANARITY : 0.016 58 REMARK 3 DIHEDRAL : 31.778 520 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and resid 2 through 17) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "B" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and resid 2 through 17) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000270223. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92010 REMARK 200 MONOCHROMATOR : HORIZONTAL DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23742 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 28.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.01058 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.14280 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MM DNA DUPLEX WITH 3 MM DB1976 REMARK 280 ANNEALED IN 7.5 MM HEPES, PH=6.6 MIXED AT A 1:1 RATIO WITH WELL REMARK 280 SOLUTION CONTAINING 10 MM HEPES, PH=8.6, 600 MM CACL2, 38% REMARK 280 PEG200, PH 8.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.46467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.92933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 106.92933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.46467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 224 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 222 O HOH A 248 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 6 O3' DG C 6 C3' -0.042 REMARK 500 DT C 8 O3' DT C 8 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC A 14 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC A 17 O5' - P - OP1 ANGL. DEV. = 9.4 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT B 12 O5' - P - OP2 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG B 16 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 6 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DC C 14 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC C 17 O5' - P - OP2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 3 OP1 REMARK 620 2 HOH A 213 O 71.2 REMARK 620 3 DC B 3 OP1 120.5 83.9 REMARK 620 4 HOH B 242 O 104.8 68.5 18.2 REMARK 620 5 DC C 3 OP1 78.5 117.8 67.0 68.8 REMARK 620 6 HOH C 228 O 174.2 106.4 63.8 78.7 107.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 7 OP1 REMARK 620 2 HOH A 240 O 92.2 REMARK 620 3 DA B 7 OP1 50.0 132.1 REMARK 620 4 HOH B 234 O 171.8 81.3 132.5 REMARK 620 5 DA C 7 OP1 87.9 173.6 51.7 99.2 REMARK 620 6 HOH C 238 O 98.9 85.8 123.2 85.6 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 7 OP2 REMARK 620 2 DA B 7 OP2 116.6 REMARK 620 3 HOH B 235 O 89.5 56.2 REMARK 620 4 DA C 7 OP2 97.5 116.3 171.8 REMARK 620 5 HOH C 240 O 171.1 54.6 84.3 88.2 REMARK 620 6 HOH C 242 O 89.4 43.5 86.5 89.2 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 105 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 8 OP1 REMARK 620 2 HOH B 211 O 135.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 109 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 12 OP1 REMARK 620 2 DA B 9 OP1 64.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 106 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 16 OP1 REMARK 620 2 HOH A 236 O 78.6 REMARK 620 3 HOH A 239 O 83.9 129.2 REMARK 620 4 HOH A 242 O 98.2 78.7 57.0 REMARK 620 5 HOH B 204 O 89.4 73.7 153.7 149.3 REMARK 620 6 HOH C 220 O 173.1 108.2 91.9 84.1 91.9 REMARK 620 7 HOH C 239 O 94.5 154.1 73.8 127.1 81.4 79.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 17 OP1 REMARK 620 2 HOH A 228 O 54.6 REMARK 620 3 HOH A 232 O 56.7 2.7 REMARK 620 4 DC B 17 OP1 55.7 2.3 3.9 REMARK 620 5 DC C 17 OP1 88.7 59.1 59.8 56.7 REMARK 620 6 HOH C 233 O 58.2 3.9 3.4 2.7 56.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 107 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 243 O REMARK 620 2 DT C 8 OP1 107.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 108 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 204 O REMARK 620 2 HOH A 215 O 79.5 REMARK 620 3 HOH A 249 O 103.5 155.6 REMARK 620 4 HOH B 243 O 58.9 71.1 131.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 203 O REMARK 620 2 HOH A 218 O 82.9 REMARK 620 3 HOH A 231 O 67.7 80.9 REMARK 620 4 HOH A 241 O 151.4 91.2 83.8 REMARK 620 5 DG B 16 OP1 92.2 174.8 95.6 92.3 REMARK 620 6 HOH B 230 O 70.2 103.0 136.8 138.2 76.9 REMARK 620 7 HOH B 240 O 142.9 82.6 142.2 62.8 102.5 80.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 208 O REMARK 620 2 HOH A 229 O 82.7 REMARK 620 3 HOH A 245 O 73.8 66.5 REMARK 620 4 HOH B 214 O 136.8 138.5 126.9 REMARK 620 5 HOH C 224 O 146.9 70.3 78.0 74.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 218 O REMARK 620 2 DG C 16 OP1 179.2 REMARK 620 3 HOH C 207 O 88.7 90.6 REMARK 620 4 HOH C 227 O 106.6 73.6 69.6 REMARK 620 5 HOH C 232 O 99.2 80.1 64.8 126.4 REMARK 620 6 HOH C 244 O 86.7 94.1 137.9 71.7 157.0 REMARK 620 7 HOH C 245 O 89.5 91.0 162.9 127.1 98.6 59.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA C 9 OP1 REMARK 620 2 DT C 12 OP1 76.8 REMARK 620 3 HOH C 210 O 82.8 6.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 218 O REMARK 620 2 HOH C 252 O 70.5 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8F94 RELATED DB: PDB DBREF 8FB4 A 2 17 PDB 8FB4 8FB4 2 17 DBREF 8FB4 B 2 17 PDB 8FB4 8FB4 2 17 DBREF 8FB4 C 2 17 PDB 8FB4 8FB4 2 17 SEQRES 1 A 16 DG DC DT DG DG DA DT DA DT DA DT DC DC SEQRES 2 A 16 DA DG DC SEQRES 1 B 16 DG DC DT DG DG DA DT DA DT DA DT DC DC SEQRES 2 B 16 DA DG DC SEQRES 1 C 16 DG DC DT DG DG DA DT DA DT DA DT DC DC SEQRES 2 C 16 DA DG DC HET WFB A 101 47 HET CA A 102 1 HET CA A 103 1 HET CA A 104 1 HET CA A 105 1 HET CA A 106 1 HET CA A 107 1 HET CA A 108 1 HET CA A 109 1 HET CA B 101 1 HET CA B 102 1 HET CA B 103 1 HET WFB C 101 47 HET CA C 102 1 HET CA C 103 1 HET CA C 104 1 HET CA C 105 1 HETNAM WFB 4,4'-(1H-BENZIMIDAZOLE-2,6-DIYL)DI(BENZENE-1- HETNAM 2 WFB CARBOXIMIDAMIDE) HETNAM CA CALCIUM ION FORMUL 4 WFB 2(C21 H18 N6) FORMUL 5 CA 15(CA 2+) FORMUL 21 HOH *149(H2 O) LINK OP1 DC A 3 CA CA A 102 1555 1555 2.40 LINK OP1 DA A 7 CA CA A 103 1555 1555 2.30 LINK OP2 DA A 7 CA CA A 104 1555 1555 2.38 LINK OP1 DT A 8 CA CA A 105 1555 1555 2.66 LINK OP1 DT A 12 CA CA A 109 1555 1555 2.19 LINK OP1 DG A 16 CA CA A 106 1555 1555 2.42 LINK OP1 DC A 17 CA CA B 103 1555 4555 2.23 LINK CA CA A 102 O HOH A 213 1555 1555 2.31 LINK CA CA A 102 OP1 DC B 3 4545 1555 2.43 LINK CA CA A 102 O HOH B 242 1555 4655 2.58 LINK CA CA A 102 OP1 DC C 3 1445 1555 2.55 LINK CA CA A 102 O HOH C 228 1555 1665 2.32 LINK CA CA A 103 O HOH A 240 1555 1555 2.35 LINK CA CA A 103 OP1 DA B 7 4555 1555 2.34 LINK CA CA A 103 O HOH B 234 1555 4555 2.35 LINK CA CA A 103 OP1 DA C 7 1555 1555 2.28 LINK CA CA A 103 O HOH C 238 1555 1555 2.33 LINK CA CA A 104 OP2 DA B 7 4555 1555 2.41 LINK CA CA A 104 O HOH B 235 1555 4555 2.46 LINK CA CA A 104 OP2 DA C 7 1555 1555 2.32 LINK CA CA A 104 O HOH C 240 1555 1555 2.38 LINK CA CA A 104 O HOH C 242 1555 1555 2.38 LINK CA CA A 105 O HOH B 211 1555 4555 2.61 LINK CA CA A 106 O HOH A 236 1555 1555 2.59 LINK CA CA A 106 O HOH A 239 1555 1555 2.54 LINK CA CA A 106 O HOH A 242 1555 1555 2.37 LINK CA CA A 106 O HOH B 204 1555 1555 2.52 LINK CA CA A 106 O HOH C 220 1555 1555 2.23 LINK CA CA A 106 O HOH C 239 1555 1555 2.27 LINK CA CA A 107 O HOH A 243 1555 1555 2.54 LINK CA CA A 107 OP1 DT C 8 1555 1555 2.45 LINK CA CA A 108 O HOH A 204 1555 1555 2.89 LINK CA CA A 108 O HOH A 215 1555 4555 2.20 LINK CA CA A 108 O HOH A 249 1555 1555 2.58 LINK CA CA A 108 O HOH B 243 1555 1555 2.23 LINK CA CA A 109 OP1 DA B 9 1445 1555 2.76 LINK O HOH A 203 CA CA B 102 1555 1555 2.49 LINK O HOH A 208 CA CA B 101 1555 1555 2.69 LINK O HOH A 218 CA CA B 102 4555 1555 2.40 LINK O HOH A 228 CA CA B 103 6555 1555 2.39 LINK O HOH A 229 CA CA B 101 1555 1555 2.18 LINK O HOH A 231 CA CA B 102 4555 1555 2.33 LINK O HOH A 232 CA CA B 103 4555 1555 2.30 LINK O HOH A 241 CA CA B 102 4555 1555 2.55 LINK O HOH A 245 CA CA B 101 1555 1555 2.63 LINK OP1 DG B 16 CA CA B 102 1555 1555 2.41 LINK OP1 DC B 17 CA CA B 103 1555 1555 2.27 LINK CA CA B 101 O HOH B 214 1555 1555 2.26 LINK CA CA B 101 O HOH C 224 1555 1555 2.45 LINK CA CA B 102 O HOH B 230 1555 1555 2.53 LINK CA CA B 102 O HOH B 240 1555 1555 2.50 LINK CA CA B 103 OP1 DC C 17 4555 1555 2.41 LINK CA CA B 103 O HOH C 233 1555 4555 2.52 LINK O HOH B 218 CA CA C 103 4555 1555 2.54 LINK OP1 DG C 5 CA CA C 105 1555 1555 2.21 LINK OP1 DA C 9 CA CA C 104 1555 4655 2.34 LINK OP1 DT C 12 CA CA C 104 1555 1555 2.72 LINK OP1 DG C 16 CA CA C 103 1555 1555 2.34 LINK CA CA C 102 O HOH C 218 1555 1555 2.39 LINK CA CA C 102 O HOH C 252 1555 1555 2.30 LINK CA CA C 103 O HOH C 207 1555 4555 2.36 LINK CA CA C 103 O HOH C 227 1555 1555 2.59 LINK CA CA C 103 O HOH C 232 1555 1555 2.41 LINK CA CA C 103 O HOH C 244 1555 1555 2.37 LINK CA CA C 103 O HOH C 245 1555 1555 2.54 LINK CA CA C 104 O HOH C 210 1555 4545 3.16 CRYST1 38.730 38.730 160.394 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025820 0.014907 0.000000 0.00000 SCALE2 0.000000 0.029814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006235 0.00000 MTRIX1 1 0.999347 -0.005024 0.035775 0.04630 1 MTRIX2 1 -0.005044 -0.999987 0.000463 -21.83408 1 MTRIX3 1 0.035772 -0.000643 -0.999360 0.16825 1 MTRIX1 2 -0.483795 0.874363 -0.037844 0.01439 1 MTRIX2 2 -0.874977 -0.484164 -0.000681 -21.77980 1 MTRIX3 2 -0.018918 0.032783 0.999283 0.21427 1