HEADER BIOSYNTHETIC PROTEIN 29-NOV-22 8FBC TITLE CRYSTAL STRUCTURE OF P450T2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 3 ORGANISM_TAXID: 256318; SOURCE 4 GENE: DCM06_12860; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P450, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.H.PEREIRA,J.HUANG,J.KEASLING,P.D.ADAMS REVDAT 3 22-MAY-24 8FBC 1 REMARK REVDAT 2 17-MAY-23 8FBC 1 JRNL REVDAT 1 10-MAY-23 8FBC 0 JRNL AUTH J.HUANG,A.QUEST,P.CRUZ-MORALES,K.DENG,J.H.PEREIRA, JRNL AUTH 2 D.VAN CURA,R.KAKUMANU,E.E.K.BAIDOO,Q.DAN,Y.CHEN,C.J.PETZOLD, JRNL AUTH 3 T.R.NORTHEN,P.D.ADAMS,D.S.CLARK,E.P.BALSKUS,J.F.HARTWIG, JRNL AUTH 4 A.MUKHOPADHYAY,J.D.KEASLING JRNL TITL COMPLETE INTEGRATION OF CARBENE-TRANSFER CHEMISTRY INTO JRNL TITL 2 BIOSYNTHESIS. JRNL REF NATURE V. 617 403 2023 JRNL REFN ESSN 1476-4687 JRNL PMID 37138074 JRNL DOI 10.1038/S41586-023-06027-2 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 119252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.610 REMARK 3 FREE R VALUE TEST SET COUNT : 1919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8000 - 3.6900 1.00 9175 153 0.1585 0.1780 REMARK 3 2 3.6900 - 2.9300 1.00 8907 148 0.1565 0.1874 REMARK 3 3 2.9300 - 2.5600 1.00 8811 143 0.1536 0.1569 REMARK 3 4 2.5600 - 2.3200 0.99 8736 137 0.1487 0.1709 REMARK 3 5 2.3200 - 2.1600 0.98 8635 147 0.1539 0.1705 REMARK 3 6 2.1600 - 2.0300 0.99 8670 138 0.1579 0.2111 REMARK 3 7 2.0300 - 1.9300 0.97 8476 141 0.1667 0.1906 REMARK 3 8 1.9300 - 1.8400 0.95 8345 138 0.1915 0.2380 REMARK 3 9 1.8400 - 1.7700 0.95 8297 130 0.1746 0.2514 REMARK 3 10 1.7700 - 1.7100 0.94 8192 132 0.1809 0.2048 REMARK 3 11 1.7100 - 1.6600 0.92 8010 139 0.1872 0.2225 REMARK 3 12 1.6600 - 1.6100 0.90 7806 122 0.2015 0.2393 REMARK 3 13 1.6100 - 1.5700 0.89 7726 125 0.2171 0.2578 REMARK 3 14 1.5700 - 1.5300 0.86 7547 126 0.2510 0.3192 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.165 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.765 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6432 REMARK 3 ANGLE : 0.849 8736 REMARK 3 CHIRALITY : 0.048 918 REMARK 3 PLANARITY : 0.020 1148 REMARK 3 DIHEDRAL : 8.695 882 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0087 -5.4329 17.5253 REMARK 3 T TENSOR REMARK 3 T11: 0.0972 T22: 0.0764 REMARK 3 T33: 0.0756 T12: 0.0105 REMARK 3 T13: 0.0055 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 2.2293 L22: 1.9444 REMARK 3 L33: 2.0740 L12: -0.3248 REMARK 3 L13: -0.1218 L23: 0.2351 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: 0.0584 S13: -0.1532 REMARK 3 S21: -0.0890 S22: 0.0150 S23: -0.0494 REMARK 3 S31: 0.0874 S32: 0.0451 S33: -0.0121 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4870 21.3406 13.1184 REMARK 3 T TENSOR REMARK 3 T11: 0.1778 T22: 0.1659 REMARK 3 T33: 0.0710 T12: -0.0476 REMARK 3 T13: -0.0224 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 2.1223 L22: 1.9574 REMARK 3 L33: 0.8287 L12: -0.2640 REMARK 3 L13: -0.3328 L23: 0.2980 REMARK 3 S TENSOR REMARK 3 S11: -0.0857 S12: 0.1602 S13: 0.0433 REMARK 3 S21: -0.2511 S22: 0.0338 S23: 0.0131 REMARK 3 S31: -0.0980 S32: 0.1279 S33: 0.0442 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5370 20.4561 1.1563 REMARK 3 T TENSOR REMARK 3 T11: 0.1832 T22: 0.2008 REMARK 3 T33: 0.1123 T12: 0.0200 REMARK 3 T13: -0.0563 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 3.4578 L22: 8.2895 REMARK 3 L33: 3.8556 L12: 3.0706 REMARK 3 L13: -0.6385 L23: -0.4756 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -0.0057 S13: 0.0961 REMARK 3 S21: -0.2444 S22: -0.2117 S23: 0.3648 REMARK 3 S31: -0.2248 S32: -0.2091 S33: 0.2177 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3083 12.4112 20.2813 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.1306 REMARK 3 T33: 0.0742 T12: -0.0294 REMARK 3 T13: 0.0018 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.7940 L22: 1.4587 REMARK 3 L33: 0.5435 L12: -0.0730 REMARK 3 L13: 0.3117 L23: 0.0457 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: 0.0619 S13: 0.0872 REMARK 3 S21: -0.0514 S22: -0.0345 S23: -0.0339 REMARK 3 S31: -0.0437 S32: 0.1302 S33: 0.0679 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.6384 -7.7435 15.0309 REMARK 3 T TENSOR REMARK 3 T11: 0.1326 T22: 0.1645 REMARK 3 T33: 0.1222 T12: -0.0022 REMARK 3 T13: 0.0312 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.4952 L22: 2.0237 REMARK 3 L33: 0.3536 L12: 0.2764 REMARK 3 L13: 0.1101 L23: 0.1001 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.0363 S13: -0.0434 REMARK 3 S21: -0.2362 S22: -0.0388 S23: 0.0598 REMARK 3 S31: 0.0123 S32: -0.0576 S33: 0.0555 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3945 -19.9421 2.2571 REMARK 3 T TENSOR REMARK 3 T11: 0.5526 T22: 0.4267 REMARK 3 T33: 0.5531 T12: 0.0503 REMARK 3 T13: 0.3057 T23: 0.0642 REMARK 3 L TENSOR REMARK 3 L11: 4.2946 L22: 5.2230 REMARK 3 L33: 4.4883 L12: 1.9142 REMARK 3 L13: 1.4470 L23: 0.3324 REMARK 3 S TENSOR REMARK 3 S11: 0.2008 S12: 0.3828 S13: 0.6971 REMARK 3 S21: -1.0843 S22: -0.2591 S23: -0.6966 REMARK 3 S31: -0.4813 S32: 0.4805 S33: 0.0293 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 201 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.4146 -10.3338 20.3499 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: 0.1297 REMARK 3 T33: 0.1148 T12: -0.0068 REMARK 3 T13: 0.0166 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.7248 L22: 1.6771 REMARK 3 L33: 0.5961 L12: 0.1359 REMARK 3 L13: -0.0255 L23: -0.0363 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: 0.0195 S13: -0.1143 REMARK 3 S21: -0.0961 S22: -0.0623 S23: 0.0685 REMARK 3 S31: 0.0086 S32: -0.0711 S33: 0.0557 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-22. REMARK 100 THE DEPOSITION ID IS D_1000270310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119252 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 47.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : 0.03600 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE 20 % PEG 3,350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.21650 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.21650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 779 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 506 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 948 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 246 CA - CB - CG ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 85.25 -151.06 REMARK 500 ASN A 101 89.17 77.79 REMARK 500 ALA A 152 155.13 -47.29 REMARK 500 ASN A 279 76.44 -160.97 REMARK 500 ALA A 282 77.59 -101.42 REMARK 500 ASP B 18 85.58 -150.85 REMARK 500 ALA B 76 34.03 -84.23 REMARK 500 ASN B 101 93.27 72.03 REMARK 500 GLU B 150 -150.27 50.34 REMARK 500 ASP B 151 46.01 -97.45 REMARK 500 ASN B 279 76.59 -163.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 68 GLU A 69 -146.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 73 0.10 SIDE CHAIN REMARK 500 ARG A 88 0.08 SIDE CHAIN REMARK 500 ARG B 73 0.25 SIDE CHAIN REMARK 500 ARG B 174 0.17 SIDE CHAIN REMARK 500 ARG B 259 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1059 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 976 DISTANCE = 6.79 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 400 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 345 SG REMARK 620 2 HEM A 400 NA 98.6 REMARK 620 3 HEM A 400 NB 86.9 89.5 REMARK 620 4 HEM A 400 NC 86.6 174.8 90.2 REMARK 620 5 HEM A 400 ND 98.0 90.5 175.0 89.3 REMARK 620 6 HOH A 600 O 172.3 84.2 85.9 90.7 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 400 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 345 SG REMARK 620 2 HEM B 400 NA 97.6 REMARK 620 3 HEM B 400 NB 84.9 90.2 REMARK 620 4 HEM B 400 NC 87.2 175.2 90.4 REMARK 620 5 HEM B 400 ND 100.2 88.9 174.8 90.0 REMARK 620 6 HOH B 650 O 172.1 84.2 87.4 91.0 87.5 REMARK 620 N 1 2 3 4 5 DBREF1 8FBC A 1 395 UNP A0A3C0KFZ6_9BURK DBREF2 8FBC A A0A3C0KFZ6 1 395 DBREF1 8FBC B 1 395 UNP A0A3C0KFZ6_9BURK DBREF2 8FBC B A0A3C0KFZ6 1 395 SEQADV 8FBC ASP A 16 UNP A0A3C0KFZ ALA 16 CONFLICT SEQADV 8FBC ASP A 18 UNP A0A3C0KFZ GLY 18 CONFLICT SEQADV 8FBC SER A 22 UNP A0A3C0KFZ ALA 22 CONFLICT SEQADV 8FBC SER A 47 UNP A0A3C0KFZ ALA 47 CONFLICT SEQADV 8FBC MET A 103 UNP A0A3C0KFZ LEU 103 CONFLICT SEQADV 8FBC ASP A 111 UNP A0A3C0KFZ THR 111 CONFLICT SEQADV 8FBC LYS A 114 UNP A0A3C0KFZ ARG 114 CONFLICT SEQADV 8FBC GLN A 115 UNP A0A3C0KFZ ASP 115 CONFLICT SEQADV 8FBC VAL A 120 UNP A0A3C0KFZ LEU 120 CONFLICT SEQADV 8FBC LYS A 121 UNP A0A3C0KFZ ARG 121 CONFLICT SEQADV 8FBC LYS A 124 UNP A0A3C0KFZ GLY 124 CONFLICT SEQADV 8FBC SER A 201 UNP A0A3C0KFZ GLU 201 CONFLICT SEQADV 8FBC ASN A 209 UNP A0A3C0KFZ HIS 209 CONFLICT SEQADV 8FBC ASP A 222 UNP A0A3C0KFZ GLU 222 CONFLICT SEQADV 8FBC PHE A 247 UNP A0A3C0KFZ MET 247 CONFLICT SEQADV 8FBC ALA A 266 UNP A0A3C0KFZ SER 266 CONFLICT SEQADV 8FBC VAL A 325 UNP A0A3C0KFZ ALA 325 CONFLICT SEQADV 8FBC ALA A 329 UNP A0A3C0KFZ THR 329 CONFLICT SEQADV 8FBC LYS A 393 UNP A0A3C0KFZ ARG 393 CONFLICT SEQADV 8FBC ALA A 394 UNP A0A3C0KFZ VAL 394 CONFLICT SEQADV 8FBC ASP B 16 UNP A0A3C0KFZ ALA 16 CONFLICT SEQADV 8FBC ASP B 18 UNP A0A3C0KFZ GLY 18 CONFLICT SEQADV 8FBC SER B 22 UNP A0A3C0KFZ ALA 22 CONFLICT SEQADV 8FBC SER B 47 UNP A0A3C0KFZ ALA 47 CONFLICT SEQADV 8FBC MET B 103 UNP A0A3C0KFZ LEU 103 CONFLICT SEQADV 8FBC ASP B 111 UNP A0A3C0KFZ THR 111 CONFLICT SEQADV 8FBC LYS B 114 UNP A0A3C0KFZ ARG 114 CONFLICT SEQADV 8FBC GLN B 115 UNP A0A3C0KFZ ASP 115 CONFLICT SEQADV 8FBC VAL B 120 UNP A0A3C0KFZ LEU 120 CONFLICT SEQADV 8FBC LYS B 121 UNP A0A3C0KFZ ARG 121 CONFLICT SEQADV 8FBC LYS B 124 UNP A0A3C0KFZ GLY 124 CONFLICT SEQADV 8FBC SER B 201 UNP A0A3C0KFZ GLU 201 CONFLICT SEQADV 8FBC ASN B 209 UNP A0A3C0KFZ HIS 209 CONFLICT SEQADV 8FBC ASP B 222 UNP A0A3C0KFZ GLU 222 CONFLICT SEQADV 8FBC PHE B 247 UNP A0A3C0KFZ MET 247 CONFLICT SEQADV 8FBC ALA B 266 UNP A0A3C0KFZ SER 266 CONFLICT SEQADV 8FBC VAL B 325 UNP A0A3C0KFZ ALA 325 CONFLICT SEQADV 8FBC ALA B 329 UNP A0A3C0KFZ THR 329 CONFLICT SEQADV 8FBC LYS B 393 UNP A0A3C0KFZ ARG 393 CONFLICT SEQADV 8FBC ALA B 394 UNP A0A3C0KFZ VAL 394 CONFLICT SEQRES 1 A 395 MET GLY LEU GLY SER PHE HIS PHE ASP PRO TYR SER PRO SEQRES 2 A 395 ALA ILE ASP ALA ASP PRO PHE PRO SER TYR LYS ARG LEU SEQRES 3 A 395 ARG ASP GLU PHE PRO CYS PHE TRP SER GLU GLU ALA GLN SEQRES 4 A 395 MET TRP ILE LEU SER ARG TYR SER ASP ILE VAL THR ALA SEQRES 5 A 395 GLY GLN ASP TRP GLN THR TYR SER SER ALA SER GLY ASN SEQRES 6 A 395 LEU MET THR GLU LEU PRO GLY ARG ALA GLY ALA THR LEU SEQRES 7 A 395 GLY SER SER ASP PRO PRO LYS HIS ASP ARG LEU ARG GLY SEQRES 8 A 395 LEU ILE GLN HIS ALA PHE MET LYS ARG ASN LEU MET ALA SEQRES 9 A 395 LEU GLU GLU PRO ILE ARG ASP VAL ALA LYS GLN VAL PHE SEQRES 10 A 395 ALA GLN VAL LYS GLY VAL LYS GLU PHE ASP PHE LYS ASP SEQRES 11 A 395 VAL SER SER GLN PHE THR VAL LYS VAL LEU MET ALA ALA SEQRES 12 A 395 LEU GLY LEU PRO MET GLY GLU ASP ALA LEU VAL PRO GLU SEQRES 13 A 395 HIS GLU VAL ARG GLU ASN ALA VAL LEU MET VAL GLN SER SEQRES 14 A 395 ASP ALA ARG THR ARG ALA LYS GLY PRO GLU HIS ILE ALA SEQRES 15 A 395 ALA TYR ASN TRP MET GLN ASP TYR ALA SER LYS VAL ILE SEQRES 16 A 395 ALA MET ARG ARG ALA SER PRO GLN ASN ASP LEU ILE SER SEQRES 17 A 395 ASN PHE ALA LEU ALA GLU ILE ASP GLY ASP ARG LEU ASP SEQRES 18 A 395 ASP ARG GLU VAL LEU LEU THR THR THR THR LEU ILE MET SEQRES 19 A 395 ALA GLY VAL GLU SER LEU GLY GLY PHE MET MET MET PHE SEQRES 20 A 395 ALA TYR ASN LEU ALA THR PHE ASP GLU ALA ARG ARG ALA SEQRES 21 A 395 VAL VAL ALA ASN PRO ALA LEU LEU PRO ASP ALA ILE GLU SEQRES 22 A 395 GLU SER LEU ARG PHE ASN THR SER ALA GLN ARG PHE ARG SEQRES 23 A 395 ARG ARG LEU MET LYS ASP VAL THR LEU HIS GLY GLN THR SEQRES 24 A 395 MET LYS GLU GLY ASP PHE VAL CYS LEU ALA TYR GLY SER SEQRES 25 A 395 GLY ASN ARG ASP GLU ARG GLN TYR PRO ASN PRO ASP VAL SEQRES 26 A 395 TYR ASP ILE ALA ARG LYS PRO ARG GLY HIS LEU GLY PHE SEQRES 27 A 395 GLY GLY GLY VAL HIS ALA CYS LEU GLY THR ALA ILE ALA SEQRES 28 A 395 ARG LEU ALA VAL LYS ILE ALA PHE GLU GLU PHE HIS GLN SEQRES 29 A 395 VAL VAL PRO ASP TYR ARG ARG VAL ALA ASP GLN LEU PRO SEQRES 30 A 395 TRP MET PRO SER SER THR PHE ARG SER PRO LEU VAL LEU SEQRES 31 A 395 GLN LEU LYS ALA GLN SEQRES 1 B 395 MET GLY LEU GLY SER PHE HIS PHE ASP PRO TYR SER PRO SEQRES 2 B 395 ALA ILE ASP ALA ASP PRO PHE PRO SER TYR LYS ARG LEU SEQRES 3 B 395 ARG ASP GLU PHE PRO CYS PHE TRP SER GLU GLU ALA GLN SEQRES 4 B 395 MET TRP ILE LEU SER ARG TYR SER ASP ILE VAL THR ALA SEQRES 5 B 395 GLY GLN ASP TRP GLN THR TYR SER SER ALA SER GLY ASN SEQRES 6 B 395 LEU MET THR GLU LEU PRO GLY ARG ALA GLY ALA THR LEU SEQRES 7 B 395 GLY SER SER ASP PRO PRO LYS HIS ASP ARG LEU ARG GLY SEQRES 8 B 395 LEU ILE GLN HIS ALA PHE MET LYS ARG ASN LEU MET ALA SEQRES 9 B 395 LEU GLU GLU PRO ILE ARG ASP VAL ALA LYS GLN VAL PHE SEQRES 10 B 395 ALA GLN VAL LYS GLY VAL LYS GLU PHE ASP PHE LYS ASP SEQRES 11 B 395 VAL SER SER GLN PHE THR VAL LYS VAL LEU MET ALA ALA SEQRES 12 B 395 LEU GLY LEU PRO MET GLY GLU ASP ALA LEU VAL PRO GLU SEQRES 13 B 395 HIS GLU VAL ARG GLU ASN ALA VAL LEU MET VAL GLN SER SEQRES 14 B 395 ASP ALA ARG THR ARG ALA LYS GLY PRO GLU HIS ILE ALA SEQRES 15 B 395 ALA TYR ASN TRP MET GLN ASP TYR ALA SER LYS VAL ILE SEQRES 16 B 395 ALA MET ARG ARG ALA SER PRO GLN ASN ASP LEU ILE SER SEQRES 17 B 395 ASN PHE ALA LEU ALA GLU ILE ASP GLY ASP ARG LEU ASP SEQRES 18 B 395 ASP ARG GLU VAL LEU LEU THR THR THR THR LEU ILE MET SEQRES 19 B 395 ALA GLY VAL GLU SER LEU GLY GLY PHE MET MET MET PHE SEQRES 20 B 395 ALA TYR ASN LEU ALA THR PHE ASP GLU ALA ARG ARG ALA SEQRES 21 B 395 VAL VAL ALA ASN PRO ALA LEU LEU PRO ASP ALA ILE GLU SEQRES 22 B 395 GLU SER LEU ARG PHE ASN THR SER ALA GLN ARG PHE ARG SEQRES 23 B 395 ARG ARG LEU MET LYS ASP VAL THR LEU HIS GLY GLN THR SEQRES 24 B 395 MET LYS GLU GLY ASP PHE VAL CYS LEU ALA TYR GLY SER SEQRES 25 B 395 GLY ASN ARG ASP GLU ARG GLN TYR PRO ASN PRO ASP VAL SEQRES 26 B 395 TYR ASP ILE ALA ARG LYS PRO ARG GLY HIS LEU GLY PHE SEQRES 27 B 395 GLY GLY GLY VAL HIS ALA CYS LEU GLY THR ALA ILE ALA SEQRES 28 B 395 ARG LEU ALA VAL LYS ILE ALA PHE GLU GLU PHE HIS GLN SEQRES 29 B 395 VAL VAL PRO ASP TYR ARG ARG VAL ALA ASP GLN LEU PRO SEQRES 30 B 395 TRP MET PRO SER SER THR PHE ARG SER PRO LEU VAL LEU SEQRES 31 B 395 GLN LEU LYS ALA GLN HET HEM A 400 73 HET HEM B 400 73 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 5 HOH *1035(H2 O) HELIX 1 AA1 SER A 12 ASP A 18 1 7 HELIX 2 AA2 PRO A 19 PHE A 30 1 12 HELIX 3 AA3 ARG A 45 ASP A 55 1 11 HELIX 4 AA4 ARG A 73 THR A 77 5 5 HELIX 5 AA5 PRO A 84 ASN A 101 1 18 HELIX 6 AA6 LEU A 102 ALA A 104 5 3 HELIX 7 AA7 LEU A 105 ALA A 118 1 14 HELIX 8 AA8 GLN A 119 LYS A 121 5 3 HELIX 9 AA9 PHE A 128 GLY A 145 1 18 HELIX 10 AB1 PRO A 155 VAL A 167 1 13 HELIX 11 AB2 GLY A 177 SER A 201 1 25 HELIX 12 AB3 ASP A 205 ALA A 213 1 9 HELIX 13 AB4 ASP A 221 PHE A 254 1 34 HELIX 14 AB5 PHE A 254 ASN A 264 1 11 HELIX 15 AB6 LEU A 267 THR A 280 1 14 HELIX 16 AB7 ALA A 309 ASN A 314 1 6 HELIX 17 AB8 GLY A 347 VAL A 366 1 20 HELIX 18 AB9 SER B 12 ASP B 18 1 7 HELIX 19 AC1 PRO B 19 PHE B 30 1 12 HELIX 20 AC2 ARG B 45 ASP B 55 1 11 HELIX 21 AC3 THR B 77 SER B 81 5 5 HELIX 22 AC4 PRO B 84 ASN B 101 1 18 HELIX 23 AC5 LEU B 102 ALA B 104 5 3 HELIX 24 AC6 LEU B 105 ALA B 118 1 14 HELIX 25 AC7 GLN B 119 LYS B 121 5 3 HELIX 26 AC8 PHE B 128 GLY B 145 1 18 HELIX 27 AC9 PRO B 155 VAL B 167 1 13 HELIX 28 AD1 GLY B 177 SER B 201 1 25 HELIX 29 AD2 ASP B 205 ALA B 213 1 9 HELIX 30 AD3 ASP B 221 PHE B 254 1 34 HELIX 31 AD4 PHE B 254 ASN B 264 1 11 HELIX 32 AD5 LEU B 267 THR B 280 1 14 HELIX 33 AD6 ALA B 309 ASN B 314 1 6 HELIX 34 AD7 GLY B 347 VAL B 366 1 20 SHEET 1 AA1 5 CYS A 32 SER A 35 0 SHEET 2 AA1 5 MET A 40 LEU A 43 -1 O MET A 40 N SER A 35 SHEET 3 AA1 5 PHE A 305 LEU A 308 1 O CYS A 307 N TRP A 41 SHEET 4 AA1 5 PHE A 285 LEU A 289 -1 N PHE A 285 O LEU A 308 SHEET 5 AA1 5 TYR A 59 SER A 60 -1 N SER A 60 O ARG A 288 SHEET 1 AA2 3 GLU A 125 ASP A 127 0 SHEET 2 AA2 3 GLN A 391 ALA A 394 -1 O LEU A 392 N PHE A 126 SHEET 3 AA2 3 TYR A 369 ARG A 371 -1 N ARG A 370 O LYS A 393 SHEET 1 AA3 2 VAL A 293 LEU A 295 0 SHEET 2 AA3 2 GLN A 298 MET A 300 -1 O MET A 300 N VAL A 293 SHEET 1 AA4 5 CYS B 32 SER B 35 0 SHEET 2 AA4 5 MET B 40 LEU B 43 -1 O MET B 40 N SER B 35 SHEET 3 AA4 5 PHE B 305 LEU B 308 1 O CYS B 307 N TRP B 41 SHEET 4 AA4 5 PHE B 285 LEU B 289 -1 N PHE B 285 O LEU B 308 SHEET 5 AA4 5 TYR B 59 SER B 60 -1 N SER B 60 O ARG B 288 SHEET 1 AA5 3 GLU B 125 ASP B 127 0 SHEET 2 AA5 3 GLN B 391 ALA B 394 -1 O LEU B 392 N PHE B 126 SHEET 3 AA5 3 TYR B 369 ARG B 371 -1 N ARG B 370 O LYS B 393 SHEET 1 AA6 2 GLU B 214 ILE B 215 0 SHEET 2 AA6 2 ASP B 218 ARG B 219 -1 O ASP B 218 N ILE B 215 SHEET 1 AA7 2 VAL B 293 LEU B 295 0 SHEET 2 AA7 2 GLN B 298 MET B 300 -1 O MET B 300 N VAL B 293 LINK SG CYS A 345 FE HEM A 400 1555 1555 2.40 LINK FE HEM A 400 O HOH A 600 1555 1555 2.13 LINK SG CYS B 345 FE HEM B 400 1555 1555 2.41 LINK FE HEM B 400 O HOH B 650 1555 1555 2.14 CISPEP 1 PRO A 83 PRO A 84 0 5.74 CISPEP 2 PRO B 83 PRO B 84 0 4.25 CRYST1 85.931 95.610 100.433 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011637 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009957 0.00000