data_8FEO # _entry.id 8FEO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8FEO pdb_00008feo 10.2210/pdb8feo/pdb WWPDB D_1000270468 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-01-24 2 'Structure model' 1 1 2024-01-31 3 'Structure model' 1 2 2024-02-14 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 3 'Structure model' '_citation.country' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_ASTM' 5 3 'Structure model' '_citation.journal_id_CSD' 6 3 'Structure model' '_citation.journal_id_ISSN' 7 3 'Structure model' '_citation.pdbx_database_id_DOI' 8 3 'Structure model' '_citation.pdbx_database_id_PubMed' 9 3 'Structure model' '_citation.title' 10 3 'Structure model' '_citation.year' 11 3 'Structure model' '_citation_author.identifier_ORCID' 12 3 'Structure model' '_citation_author.name' 13 4 'Structure model' '_citation.journal_volume' 14 4 'Structure model' '_citation.page_first' 15 4 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8FEO _pdbx_database_status.recvd_initial_deposition_date 2022-12-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 3 _pdbx_contact_author.email jwszostak@uchicago.edu _pdbx_contact_author.name_first Jack _pdbx_contact_author.name_last Szostak _pdbx_contact_author.name_mi W. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4131-1203 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fang, Z.' 1 0000-0001-8679-6633 'Szostak, J.W.' 2 0000-0003-4131-1203 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 146 _citation.language ? _citation.page_first 3861 _citation.page_last 3871 _citation.title 'Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.3c11158 _citation.pdbx_database_id_PubMed 38293747 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ding, D.' 1 0000-0001-9046-7816 primary 'Fang, Z.' 2 0000-0001-8679-6633 primary 'Kim, S.C.' 3 0000-0002-2230-1774 primary ;O'Flaherty, D.K. ; 4 0000-0003-3693-6380 primary 'Jia, X.' 5 0000-0001-9094-9882 primary 'Stone, T.B.' 6 ? primary 'Zhou, L.' 7 0000-0002-0393-4787 primary 'Szostak, J.W.' 8 0000-0003-4131-1203 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA 16mer' 5060.023 1 ? ? ? ? 2 non-polymer syn 'STRONTIUM ION' 87.620 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 73 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AGAGUAGAUCUUCUCU _entity_poly.pdbx_seq_one_letter_code_can AGAGUAGAUCUUCUCU _entity_poly.pdbx_strand_id AAA _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'STRONTIUM ION' SR 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 G n 1 3 A n 1 4 G n 1 5 U n 1 6 A n 1 7 G n 1 8 A n 1 9 U n 1 10 C n 1 11 U n 1 12 U n 1 13 C n 1 14 U n 1 15 C n 1 16 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 1 1 A A AAA . n A 1 2 G 2 2 2 G G AAA . n A 1 3 A 3 3 3 A A AAA . n A 1 4 G 4 4 4 G G AAA . n A 1 5 U 5 5 5 U U AAA . n A 1 6 A 6 6 6 A A AAA . n A 1 7 G 7 7 7 G G AAA . n A 1 8 A 8 8 8 A A AAA . n A 1 9 U 9 9 9 U U AAA . n A 1 10 C 10 10 10 C C AAA . n A 1 11 U 11 11 11 U U AAA . n A 1 12 U 12 12 12 U U AAA . n A 1 13 C 13 13 13 C C AAA . n A 1 14 U 14 14 14 U U AAA . n A 1 15 C 15 15 15 C C AAA . n A 1 16 U 16 16 16 U U AAA . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SR 1 101 1 SR SR AAA . C 3 MG 1 102 1 MG MG AAA . D 4 HOH 1 201 72 HOH HOH AAA . D 4 HOH 2 202 75 HOH HOH AAA . D 4 HOH 3 203 57 HOH HOH AAA . D 4 HOH 4 204 73 HOH HOH AAA . D 4 HOH 5 205 21 HOH HOH AAA . D 4 HOH 6 206 37 HOH HOH AAA . D 4 HOH 7 207 54 HOH HOH AAA . D 4 HOH 8 208 26 HOH HOH AAA . D 4 HOH 9 209 7 HOH HOH AAA . D 4 HOH 10 210 8 HOH HOH AAA . D 4 HOH 11 211 1 HOH HOH AAA . D 4 HOH 12 212 38 HOH HOH AAA . D 4 HOH 13 213 13 HOH HOH AAA . D 4 HOH 14 214 3 HOH HOH AAA . D 4 HOH 15 215 18 HOH HOH AAA . D 4 HOH 16 216 16 HOH HOH AAA . D 4 HOH 17 217 20 HOH HOH AAA . D 4 HOH 18 218 5 HOH HOH AAA . D 4 HOH 19 219 19 HOH HOH AAA . D 4 HOH 20 220 67 HOH HOH AAA . D 4 HOH 21 221 33 HOH HOH AAA . D 4 HOH 22 222 41 HOH HOH AAA . D 4 HOH 23 223 55 HOH HOH AAA . D 4 HOH 24 224 68 HOH HOH AAA . D 4 HOH 25 225 36 HOH HOH AAA . D 4 HOH 26 226 22 HOH HOH AAA . D 4 HOH 27 227 53 HOH HOH AAA . D 4 HOH 28 228 25 HOH HOH AAA . D 4 HOH 29 229 27 HOH HOH AAA . D 4 HOH 30 230 63 HOH HOH AAA . D 4 HOH 31 231 64 HOH HOH AAA . D 4 HOH 32 232 46 HOH HOH AAA . D 4 HOH 33 233 9 HOH HOH AAA . D 4 HOH 34 234 59 HOH HOH AAA . D 4 HOH 35 235 6 HOH HOH AAA . D 4 HOH 36 236 23 HOH HOH AAA . D 4 HOH 37 237 4 HOH HOH AAA . D 4 HOH 38 238 43 HOH HOH AAA . D 4 HOH 39 239 10 HOH HOH AAA . D 4 HOH 40 240 71 HOH HOH AAA . D 4 HOH 41 241 61 HOH HOH AAA . D 4 HOH 42 242 28 HOH HOH AAA . D 4 HOH 43 243 48 HOH HOH AAA . D 4 HOH 44 244 58 HOH HOH AAA . D 4 HOH 45 245 31 HOH HOH AAA . D 4 HOH 46 246 2 HOH HOH AAA . D 4 HOH 47 247 60 HOH HOH AAA . D 4 HOH 48 248 42 HOH HOH AAA . D 4 HOH 49 249 56 HOH HOH AAA . D 4 HOH 50 250 17 HOH HOH AAA . D 4 HOH 51 251 15 HOH HOH AAA . D 4 HOH 52 252 14 HOH HOH AAA . D 4 HOH 53 253 65 HOH HOH AAA . D 4 HOH 54 254 11 HOH HOH AAA . D 4 HOH 55 255 35 HOH HOH AAA . D 4 HOH 56 256 74 HOH HOH AAA . D 4 HOH 57 257 49 HOH HOH AAA . D 4 HOH 58 258 34 HOH HOH AAA . D 4 HOH 59 259 44 HOH HOH AAA . D 4 HOH 60 260 70 HOH HOH AAA . D 4 HOH 61 261 47 HOH HOH AAA . D 4 HOH 62 262 12 HOH HOH AAA . D 4 HOH 63 263 66 HOH HOH AAA . D 4 HOH 64 264 50 HOH HOH AAA . D 4 HOH 65 265 69 HOH HOH AAA . D 4 HOH 66 266 32 HOH HOH AAA . D 4 HOH 67 267 30 HOH HOH AAA . D 4 HOH 68 268 52 HOH HOH AAA . D 4 HOH 69 269 29 HOH HOH AAA . D 4 HOH 70 270 62 HOH HOH AAA . D 4 HOH 71 271 51 HOH HOH AAA . D 4 HOH 72 272 40 HOH HOH AAA . D 4 HOH 73 273 45 HOH HOH AAA . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8FEO _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.503 _cell.length_a_esd ? _cell.length_b 41.503 _cell.length_b_esd ? _cell.length_c 125.299 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8FEO _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8FEO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 40.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Strontium chloride hexahydrate, 0.02 M Magnesium chloride hexahydrate, 0.04 M Sodium cacodylate trihydrate pH 7.0, 20% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-04-23 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.033175 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.033175 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8FEO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.52 _reflns.d_resolution_low 17.8 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6587 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.4 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 36.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.081 _reflns.pdbx_Rpim_I_all 0.029 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.52 _reflns_shell.d_res_low 1.55 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 322 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.0 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.253 _reflns_shell.pdbx_Rpim_I_all 0.093 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.973 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.1 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.234 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.008 _refine.aniso_B[1][2] 0.004 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] 0.008 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.027 _refine.B_iso_max ? _refine.B_iso_mean 21.388 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8FEO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.520 _refine.ls_d_res_low 17.796 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6587 _refine.ls_number_reflns_R_free 320 _refine.ls_number_reflns_R_work 6267 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.182 _refine.ls_percent_reflns_R_free 4.858 _refine.ls_R_factor_all 0.200 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2393 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1980 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.092 _refine.pdbx_overall_ESU_R_Free 0.095 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.579 _refine.overall_SU_ML 0.059 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 334 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 409 _refine_hist.d_res_high 1.520 _refine_hist.d_res_low 17.796 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.015 0.012 372 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.003 0.018 155 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.559 1.789 577 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.688 1.655 379 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.226 0.200 79 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.028 0.020 181 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 58 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.082 0.200 22 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.201 0.200 141 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.238 0.200 139 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.086 0.200 88 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.208 0.200 46 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.210 0.200 5 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.216 0.200 14 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.414 0.200 32 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.197 0.200 12 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 1.722 2.075 371 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.719 2.073 372 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 2.358 3.133 577 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.356 3.132 578 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.620 21.183 490 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 4.636 20.143 474 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.520 1.560 . . 22 451 99.1614 . . . . 0.231 . . . . . . . . . . . 0.229 'X-RAY DIFFRACTION' 1.560 1.602 . . 20 454 100.0000 . . . . 0.204 . . . . . . . . . . . 0.212 'X-RAY DIFFRACTION' 1.602 1.649 . . 28 429 100.0000 . . . . 0.206 . . . . . . . . . . . 0.249 'X-RAY DIFFRACTION' 1.649 1.699 . . 23 417 100.0000 . . . . 0.183 . . . . . . . . . . . 0.219 'X-RAY DIFFRACTION' 1.699 1.755 . . 18 413 100.0000 . . . . 0.181 . . . . . . . . . . . 0.234 'X-RAY DIFFRACTION' 1.755 1.816 . . 21 408 100.0000 . . . . 0.189 . . . . . . . . . . . 0.293 'X-RAY DIFFRACTION' 1.816 1.885 . . 22 387 100.0000 . . . . 0.194 . . . . . . . . . . . 0.194 'X-RAY DIFFRACTION' 1.885 1.962 . . 24 362 99.4845 . . . . 0.205 . . . . . . . . . . . 0.279 'X-RAY DIFFRACTION' 1.962 2.049 . . 14 367 100.0000 . . . . 0.207 . . . . . . . . . . . 0.218 'X-RAY DIFFRACTION' 2.049 2.148 . . 16 341 100.0000 . . . . 0.220 . . . . . . . . . . . 0.271 'X-RAY DIFFRACTION' 2.148 2.264 . . 17 331 100.0000 . . . . 0.223 . . . . . . . . . . . 0.318 'X-RAY DIFFRACTION' 2.264 2.401 . . 18 317 99.7024 . . . . 0.191 . . . . . . . . . . . 0.360 'X-RAY DIFFRACTION' 2.401 2.566 . . 15 293 99.6764 . . . . 0.192 . . . . . . . . . . . 0.191 'X-RAY DIFFRACTION' 2.566 2.771 . . 17 269 98.9619 . . . . 0.220 . . . . . . . . . . . 0.174 'X-RAY DIFFRACTION' 2.771 3.034 . . 13 262 100.0000 . . . . 0.167 . . . . . . . . . . . 0.212 'X-RAY DIFFRACTION' 3.034 3.390 . . 5 216 92.4686 . . . . 0.179 . . . . . . . . . . . 0.156 'X-RAY DIFFRACTION' 3.390 3.910 . . 11 195 94.0639 . . . . 0.171 . . . . . . . . . . . 0.295 'X-RAY DIFFRACTION' 3.910 4.779 . . 11 169 90.9091 . . . . 0.173 . . . . . . . . . . . 0.212 'X-RAY DIFFRACTION' 4.779 6.714 . . 4 126 86.0927 . . . . 0.239 . . . . . . . . . . . 0.225 'X-RAY DIFFRACTION' 6.714 17.796 . . 1 60 59.8039 . . . . 0.377 . . . . . . . . . . . 0.359 # _struct.entry_id 8FEO _struct.title '16mer self-complementary duplex RNA with two separated native U:U pairs' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8FEO _struct_keywords.text 'RNA, Duplexes, UU pairs' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8FEO _struct_ref.pdbx_db_accession 8FEO _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8FEO _struct_ref_seq.pdbx_strand_id AAA _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8FEO _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2040 ? 1 MORE -81 ? 1 'SSA (A^2)' 5920 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 16 OP1 ? ? ? 1_555 C MG . MG ? ? AAA U 16 AAA MG 102 1_555 ? ? ? ? ? ? ? 2.351 ? ? metalc2 metalc ? ? B SR . SR ? ? ? 1_555 D HOH . O ? ? AAA SR 101 AAA HOH 232 1_555 ? ? ? ? ? ? ? 2.582 ? ? metalc3 metalc ? ? B SR . SR ? ? ? 1_555 D HOH . O ? ? AAA SR 101 AAA HOH 236 1_555 ? ? ? ? ? ? ? 2.539 ? ? metalc4 metalc ? ? B SR . SR ? ? ? 1_555 D HOH . O ? ? AAA SR 101 AAA HOH 245 1_555 ? ? ? ? ? ? ? 2.534 ? ? metalc5 metalc ? ? B SR . SR ? ? ? 1_555 D HOH . O ? ? AAA SR 101 AAA HOH 270 1_555 ? ? ? ? ? ? ? 2.638 ? ? metalc6 metalc ? ? B SR . SR ? ? ? 1_555 D HOH . O ? ? AAA SR 101 AAA HOH 273 4_555 ? ? ? ? ? ? ? 2.311 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? AAA MG 102 AAA HOH 215 18_654 ? ? ? ? ? ? ? 2.379 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? AAA MG 102 AAA HOH 257 14_654 ? ? ? ? ? ? ? 2.601 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? AAA MG 102 AAA HOH 272 1_555 ? ? ? ? ? ? ? 2.405 ? ? hydrog1 hydrog ? ? A A 1 N1 ? ? ? 1_555 A U 16 N3 ? ? AAA A 1 AAA U 16 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 1 N6 ? ? ? 1_555 A U 16 O4 ? ? AAA A 1 AAA U 16 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 15 N3 ? ? AAA G 2 AAA C 15 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 15 O2 ? ? AAA G 2 AAA C 15 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 15 N4 ? ? AAA G 2 AAA C 15 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 14 N3 ? ? AAA A 3 AAA U 14 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 14 O4 ? ? AAA A 3 AAA U 14 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 13 N3 ? ? AAA G 4 AAA C 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 13 O2 ? ? AAA G 4 AAA C 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 13 N4 ? ? AAA G 4 AAA C 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 N3 ? ? ? 1_555 A U 12 O4 ? ? AAA U 5 AAA U 12 4_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog12 hydrog ? ? A U 5 O2 ? ? ? 1_555 A U 12 N3 ? ? AAA U 5 AAA U 12 4_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog13 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 11 N3 ? ? AAA A 6 AAA U 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 11 O4 ? ? AAA A 6 AAA U 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 10 N3 ? ? AAA G 7 AAA C 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 10 O2 ? ? AAA G 7 AAA C 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 10 N4 ? ? AAA G 7 AAA C 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 9 N3 ? ? AAA A 8 AAA U 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 9 O4 ? ? AAA A 8 AAA U 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 8 N1 ? ? AAA U 9 AAA A 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 8 N6 ? ? AAA U 9 AAA A 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 7 N1 ? ? AAA C 10 AAA G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 7 O6 ? ? AAA C 10 AAA G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 7 N2 ? ? AAA C 10 AAA G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 6 N1 ? ? AAA U 11 AAA A 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 6 N6 ? ? AAA U 11 AAA A 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 12 N3 ? ? ? 1_555 A U 5 O2 ? ? AAA U 12 AAA U 5 4_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog28 hydrog ? ? A U 12 O4 ? ? ? 1_555 A U 5 N3 ? ? AAA U 12 AAA U 5 4_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog29 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 4 N1 ? ? AAA C 13 AAA G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 4 O6 ? ? AAA C 13 AAA G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 4 N2 ? ? AAA C 13 AAA G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 3 N1 ? ? AAA U 14 AAA A 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 3 N6 ? ? AAA U 14 AAA A 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 2 N1 ? ? AAA C 15 AAA G 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 2 O6 ? ? AAA C 15 AAA G 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 2 N2 ? ? AAA C 15 AAA G 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 1 N1 ? ? AAA U 16 AAA A 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 1 N6 ? ? AAA U 16 AAA A 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A U 16 ? AAA U 16 ? 1_555 MG ? C MG . ? AAA MG 102 ? 1_555 O ? D HOH . ? AAA HOH 215 ? 18_654 82.5 ? 2 OP1 ? A U 16 ? AAA U 16 ? 1_555 MG ? C MG . ? AAA MG 102 ? 1_555 O ? D HOH . ? AAA HOH 257 ? 14_654 112.9 ? 3 O ? D HOH . ? AAA HOH 215 ? 18_654 MG ? C MG . ? AAA MG 102 ? 1_555 O ? D HOH . ? AAA HOH 257 ? 14_654 121.2 ? 4 OP1 ? A U 16 ? AAA U 16 ? 1_555 MG ? C MG . ? AAA MG 102 ? 1_555 O ? D HOH . ? AAA HOH 272 ? 1_555 127.4 ? 5 O ? D HOH . ? AAA HOH 215 ? 18_654 MG ? C MG . ? AAA MG 102 ? 1_555 O ? D HOH . ? AAA HOH 272 ? 1_555 63.5 ? 6 O ? D HOH . ? AAA HOH 257 ? 14_654 MG ? C MG . ? AAA MG 102 ? 1_555 O ? D HOH . ? AAA HOH 272 ? 1_555 118.8 ? 7 O ? D HOH . ? AAA HOH 232 ? 1_555 SR ? B SR . ? AAA SR 101 ? 1_555 O ? D HOH . ? AAA HOH 236 ? 1_555 86.2 ? 8 O ? D HOH . ? AAA HOH 232 ? 1_555 SR ? B SR . ? AAA SR 101 ? 1_555 O ? D HOH . ? AAA HOH 245 ? 1_555 70.2 ? 9 O ? D HOH . ? AAA HOH 236 ? 1_555 SR ? B SR . ? AAA SR 101 ? 1_555 O ? D HOH . ? AAA HOH 245 ? 1_555 155.4 ? 10 O ? D HOH . ? AAA HOH 232 ? 1_555 SR ? B SR . ? AAA SR 101 ? 1_555 O ? D HOH . ? AAA HOH 270 ? 1_555 117.3 ? 11 O ? D HOH . ? AAA HOH 236 ? 1_555 SR ? B SR . ? AAA SR 101 ? 1_555 O ? D HOH . ? AAA HOH 270 ? 1_555 128.3 ? 12 O ? D HOH . ? AAA HOH 245 ? 1_555 SR ? B SR . ? AAA SR 101 ? 1_555 O ? D HOH . ? AAA HOH 270 ? 1_555 71.3 ? 13 O ? D HOH . ? AAA HOH 232 ? 1_555 SR ? B SR . ? AAA SR 101 ? 1_555 O ? D HOH . ? AAA HOH 273 ? 4_555 77.4 ? 14 O ? D HOH . ? AAA HOH 236 ? 1_555 SR ? B SR . ? AAA SR 101 ? 1_555 O ? D HOH . ? AAA HOH 273 ? 4_555 70.0 ? 15 O ? D HOH . ? AAA HOH 245 ? 1_555 SR ? B SR . ? AAA SR 101 ? 1_555 O ? D HOH . ? AAA HOH 273 ? 4_555 109.8 ? 16 O ? D HOH . ? AAA HOH 270 ? 1_555 SR ? B SR . ? AAA SR 101 ? 1_555 O ? D HOH . ? AAA HOH 273 ? 4_555 71.6 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O AAA HOH 231 ? ? O AAA HOH 261 ? ? 2.02 2 1 O AAA HOH 202 ? ? O AAA HOH 229 ? ? 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O5'" AAA G 7 ? ? "C5'" AAA G 7 ? ? 1.308 1.420 -0.112 0.009 N 2 1 P AAA U 16 ? ? "O5'" AAA U 16 ? ? 1.659 1.593 0.066 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" AAA G 7 ? ? "C5'" AAA G 7 ? ? "C4'" AAA G 7 ? ? 103.81 109.40 -5.59 0.80 N 2 1 "C3'" AAA G 7 ? ? "O3'" AAA G 7 ? ? P AAA A 8 ? ? 111.97 119.70 -7.73 1.20 Y 3 1 "O3'" AAA U 12 ? ? P AAA C 13 ? ? OP2 AAA C 13 ? ? 117.75 110.50 7.25 1.10 Y # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id C _pdbx_validate_planes.auth_asym_id AAA _pdbx_validate_planes.auth_seq_id 15 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.060 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 AAA HOH 222 ? D HOH . 2 1 AAA HOH 238 ? D HOH . 3 1 AAA HOH 248 ? D HOH . 4 1 AAA HOH 259 ? D HOH . 5 1 AAA HOH 260 ? D HOH . # _pdbx_entry_details.entry_id 8FEO _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 SR SR SR N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8FEO 'a-form double helix' 8FEO 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 1 1_555 A U 16 4_555 -0.018 -0.106 0.064 0.117 -9.621 1.696 1 AAA_A1:U16_AAA AAA 1 ? AAA 16 ? 20 1 1 A G 2 1_555 A C 15 4_555 -0.179 -0.196 -0.172 -5.059 -15.118 -0.992 2 AAA_G2:C15_AAA AAA 2 ? AAA 15 ? 19 1 1 A A 3 1_555 A U 14 4_555 0.099 -0.078 0.007 -3.039 -14.300 2.072 3 AAA_A3:U14_AAA AAA 3 ? AAA 14 ? 20 1 1 A G 4 1_555 A C 13 4_555 -0.322 -0.182 -0.109 -5.108 -14.544 -0.169 4 AAA_G4:C13_AAA AAA 4 ? AAA 13 ? 19 1 1 A U 5 1_555 A U 12 4_555 2.328 -1.534 0.006 -2.431 -9.436 0.939 5 AAA_U5:U12_AAA AAA 5 ? AAA 12 ? 16 1 1 A A 6 1_555 A U 11 4_555 -0.149 -0.023 0.038 -5.442 -14.028 9.507 6 AAA_A6:U11_AAA AAA 6 ? AAA 11 ? 20 1 1 A G 7 1_555 A C 10 4_555 -0.145 -0.114 0.037 -2.404 -6.277 -1.152 7 AAA_G7:C10_AAA AAA 7 ? AAA 10 ? 19 1 1 A A 8 1_555 A U 9 4_555 -0.103 -0.048 -0.134 -0.776 -12.960 1.553 8 AAA_A8:U9_AAA AAA 8 ? AAA 9 ? 20 1 1 A U 9 1_555 A A 8 4_555 0.103 -0.048 -0.134 0.776 -12.960 1.553 9 AAA_U9:A8_AAA AAA 9 ? AAA 8 ? 20 1 1 A C 10 1_555 A G 7 4_555 0.145 -0.114 0.037 2.404 -6.277 -1.152 10 AAA_C10:G7_AAA AAA 10 ? AAA 7 ? 19 1 1 A U 11 1_555 A A 6 4_555 0.149 -0.023 0.038 5.442 -14.028 9.507 11 AAA_U11:A6_AAA AAA 11 ? AAA 6 ? 20 1 1 A U 12 1_555 A U 5 4_555 -2.328 -1.534 0.006 2.431 -9.436 0.939 12 AAA_U12:U5_AAA AAA 12 ? AAA 5 ? 16 1 1 A C 13 1_555 A G 4 4_555 0.322 -0.182 -0.109 5.108 -14.544 -0.169 13 AAA_C13:G4_AAA AAA 13 ? AAA 4 ? 19 1 1 A U 14 1_555 A A 3 4_555 -0.099 -0.078 0.007 3.039 -14.300 2.072 14 AAA_U14:A3_AAA AAA 14 ? AAA 3 ? 20 1 1 A C 15 1_555 A G 2 4_555 0.179 -0.196 -0.172 5.059 -15.118 -0.992 15 AAA_C15:G2_AAA AAA 15 ? AAA 2 ? 19 1 1 A U 16 1_555 A A 1 4_555 0.018 -0.106 0.064 -0.117 -9.621 1.696 16 AAA_U16:A1_AAA AAA 16 ? AAA 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 1 1_555 A U 16 4_555 A G 2 1_555 A C 15 4_555 -0.597 -1.104 3.344 -0.023 8.048 33.757 -3.069 0.999 3.009 13.620 0.038 34.676 1 AAAAAA_A1G2:C15U16_AAAAAA AAA 1 ? AAA 16 ? AAA 2 ? AAA 15 ? 1 A G 2 1_555 A C 15 4_555 A A 3 1_555 A U 14 4_555 0.711 -1.149 3.175 0.405 4.690 33.742 -2.669 -1.152 3.000 8.030 -0.693 34.060 2 AAAAAA_G2A3:U14C15_AAAAAA AAA 2 ? AAA 15 ? AAA 3 ? AAA 14 ? 1 A A 3 1_555 A U 14 4_555 A G 4 1_555 A C 13 4_555 -0.248 -1.407 3.277 -0.584 10.716 30.581 -4.290 0.349 2.651 19.575 1.067 32.367 3 AAAAAA_A3G4:C13U14_AAAAAA AAA 3 ? AAA 14 ? AAA 4 ? AAA 13 ? 1 A G 4 1_555 A C 13 4_555 A U 5 1_555 A U 12 4_555 0.356 -1.193 3.319 0.213 7.789 41.807 -2.423 -0.470 3.061 10.802 -0.295 42.495 4 AAAAAA_G4U5:U12C13_AAAAAA AAA 4 ? AAA 13 ? AAA 5 ? AAA 12 ? 1 A U 5 1_555 A U 12 4_555 A A 6 1_555 A U 11 4_555 1.118 -2.158 3.105 6.893 19.150 22.309 -7.143 -1.077 1.210 40.325 -14.515 30.111 5 AAAAAA_U5A6:U11U12_AAAAAA AAA 5 ? AAA 12 ? AAA 6 ? AAA 11 ? 1 A A 6 1_555 A U 11 4_555 A G 7 1_555 A C 10 4_555 -0.830 -2.011 3.096 -0.991 6.320 25.924 -5.805 1.570 2.571 13.820 2.168 26.689 6 AAAAAA_A6G7:C10U11_AAAAAA AAA 6 ? AAA 11 ? AAA 7 ? AAA 10 ? 1 A G 7 1_555 A C 10 4_555 A A 8 1_555 A U 9 4_555 -0.267 -1.508 3.237 1.063 7.386 31.863 -3.876 0.646 2.816 13.229 -1.904 32.704 7 AAAAAA_G7A8:U9C10_AAAAAA AAA 7 ? AAA 10 ? AAA 8 ? AAA 9 ? 1 A A 8 1_555 A U 9 4_555 A U 9 1_555 A A 8 4_555 0.000 -1.182 3.230 0.000 6.448 32.494 -3.110 0.000 2.947 11.383 0.000 33.110 8 AAAAAA_A8U9:A8U9_AAAAAA AAA 8 ? AAA 9 ? AAA 9 ? AAA 8 ? 1 A U 9 1_555 A A 8 4_555 A C 10 1_555 A G 7 4_555 0.267 -1.508 3.237 -1.063 7.386 31.863 -3.876 -0.646 2.816 13.229 1.904 32.704 9 AAAAAA_U9C10:G7A8_AAAAAA AAA 9 ? AAA 8 ? AAA 10 ? AAA 7 ? 1 A C 10 1_555 A G 7 4_555 A U 11 1_555 A A 6 4_555 0.830 -2.011 3.096 0.991 6.320 25.924 -5.805 -1.570 2.571 13.820 -2.168 26.689 10 AAAAAA_C10U11:A6G7_AAAAAA AAA 10 ? AAA 7 ? AAA 11 ? AAA 6 ? 1 A U 11 1_555 A A 6 4_555 A U 12 1_555 A U 5 4_555 -1.118 -2.158 3.105 -6.893 19.150 22.309 -7.143 1.077 1.210 40.325 14.515 30.111 11 AAAAAA_U11U12:U5A6_AAAAAA AAA 11 ? AAA 6 ? AAA 12 ? AAA 5 ? 1 A U 12 1_555 A U 5 4_555 A C 13 1_555 A G 4 4_555 -0.356 -1.193 3.319 -0.213 7.789 41.807 -2.423 0.470 3.061 10.802 0.295 42.495 12 AAAAAA_U12C13:G4U5_AAAAAA AAA 12 ? AAA 5 ? AAA 13 ? AAA 4 ? 1 A C 13 1_555 A G 4 4_555 A U 14 1_555 A A 3 4_555 0.248 -1.407 3.277 0.584 10.716 30.581 -4.290 -0.349 2.651 19.575 -1.067 32.367 13 AAAAAA_C13U14:A3G4_AAAAAA AAA 13 ? AAA 4 ? AAA 14 ? AAA 3 ? 1 A U 14 1_555 A A 3 4_555 A C 15 1_555 A G 2 4_555 -0.711 -1.149 3.175 -0.405 4.690 33.742 -2.669 1.152 3.000 8.030 0.693 34.060 14 AAAAAA_U14C15:G2A3_AAAAAA AAA 14 ? AAA 3 ? AAA 15 ? AAA 2 ? 1 A C 15 1_555 A G 2 4_555 A U 16 1_555 A A 1 4_555 0.597 -1.104 3.344 0.023 8.048 33.757 -3.069 -0.999 3.009 13.620 -0.038 34.676 15 AAAAAA_C15U16:A1G2_AAAAAA AAA 15 ? AAA 2 ? AAA 16 ? AAA 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Simons Foundation' 'United States' 290363FY18 1 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3ND4 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8FEO _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.024095 _atom_sites.fract_transf_matrix[1][2] 0.013911 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027822 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007981 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 MG 12 12 5.427 2.828 2.176 79.261 1.228 0.381 2.310 7.194 0.859 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 P 15 15 6.435 1.907 4.179 27.157 1.780 0.526 1.491 68.164 1.115 SR 38 38 17.574 1.556 9.823 14.099 5.424 0.166 2.671 132.376 2.508 # loop_