HEADER DNA BINDING PROTEIN 16-DEC-22 8FIJ TITLE WILD TYPE APOBEC3A IN COMPLEX WITH TT(FDZ)-HAIRPIN INHIBITOR (CRYSTAL TITLE 2 FORM 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DC->DU-EDITING ENZYME APOBEC-3A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: A3A,PHORBOLIN-1; COMPND 5 EC: 3.5.4.38; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*CP*GP*CP*TP*TP*(UFP)P*GP*CP*GP*CP*T)-3'); COMPND 9 CHAIN: D, E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APOBEC3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETITE; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS APOBEC, APOBEC3A, A3A, CANCER, DNA, MUTATION, CYTIDINE DEAMINASE, KEYWDS 2 HAIRPIN DNA INHIBITOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HARJES,G.B.JAMESON,E.HARJES,V.V.FILICHEV,H.M.KURUP REVDAT 2 18-SEP-24 8FIJ 1 JRNL REVDAT 1 06-SEP-23 8FIJ 0 JRNL AUTH S.HARJES,H.M.KURUP,A.E.RIEFFER,M.BAYARJARGAL,J.FILITCHEVA, JRNL AUTH 2 Y.SU,T.K.HALE,V.V.FILICHEV,E.HARJES,R.S.HARRIS,G.B.JAMESON JRNL TITL STRUCTURE-GUIDED INHIBITION OF THE CANCER DNA-MUTATING JRNL TITL 2 ENZYME APOBEC3A. JRNL REF NAT COMMUN V. 14 6382 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37821454 JRNL DOI 10.1038/S41467-023-42174-W REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 11852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.256 REMARK 3 FREE R VALUE TEST SET COUNT : 623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 719 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.4320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2924 REMARK 3 NUCLEIC ACID ATOMS : 404 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.27800 REMARK 3 B22 (A**2) : -2.67900 REMARK 3 B33 (A**2) : -1.93900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.15400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.500 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.581 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 67.886 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.834 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3478 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2908 ; 0.003 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4800 ; 1.640 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6630 ; 1.352 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 7.144 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;33.612 ;20.778 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;15.860 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;23.042 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 455 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3700 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 866 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 726 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 105 ; 0.288 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1588 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 78 ; 0.213 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.070 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1463 ; 3.098 ; 4.828 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1462 ; 3.085 ; 4.827 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1820 ; 5.097 ; 7.229 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1821 ; 5.096 ; 7.231 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2015 ; 3.131 ; 5.179 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1992 ; 3.056 ; 5.121 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2980 ; 5.221 ; 7.734 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2945 ; 5.169 ; 7.648 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 10 A 196 NULL REMARK 3 1 B 10 B 196 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5400 0.3850 31.2820 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.0177 REMARK 3 T33: 0.1272 T12: -0.0183 REMARK 3 T13: 0.1667 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.1818 L22: 0.7485 REMARK 3 L33: 2.1655 L12: -0.3235 REMARK 3 L13: 0.8751 L23: -0.1113 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: -0.0031 S13: 0.0215 REMARK 3 S21: -0.0666 S22: 0.1035 S23: -0.0306 REMARK 3 S31: 0.0287 S32: -0.0300 S33: -0.1243 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): 37.9630 13.9010 3.0520 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.0274 REMARK 3 T33: 0.1712 T12: 0.0063 REMARK 3 T13: 0.1735 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 1.4640 L22: 1.1541 REMARK 3 L33: 1.3427 L12: 0.3214 REMARK 3 L13: 0.3451 L23: -0.0429 REMARK 3 S TENSOR REMARK 3 S11: 0.0906 S12: 0.1089 S13: 0.1307 REMARK 3 S21: 0.0608 S22: 0.0186 S23: 0.0989 REMARK 3 S31: -0.0357 S32: -0.1277 S33: -0.1092 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -4 D 3 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6800 -7.3620 30.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.2230 T22: 0.5356 REMARK 3 T33: 0.1987 T12: -0.0796 REMARK 3 T13: 0.1175 T23: 0.1223 REMARK 3 L TENSOR REMARK 3 L11: 1.5459 L22: 3.7958 REMARK 3 L33: 0.7461 L12: 2.2626 REMARK 3 L13: -0.3879 L23: -1.1260 REMARK 3 S TENSOR REMARK 3 S11: -0.0303 S12: 0.2628 S13: -0.1197 REMARK 3 S21: 0.1288 S22: -0.1343 S23: -0.3028 REMARK 3 S31: -0.1081 S32: 0.4953 S33: 0.1646 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E -6 E 5 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8250 24.1880 23.7260 REMARK 3 T TENSOR REMARK 3 T11: 0.2381 T22: 0.3810 REMARK 3 T33: 0.1170 T12: 0.0184 REMARK 3 T13: 0.1082 T23: -0.0823 REMARK 3 L TENSOR REMARK 3 L11: 1.7711 L22: 8.7391 REMARK 3 L33: 4.3313 L12: -0.4212 REMARK 3 L13: 0.7510 L23: 4.9090 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: -0.5988 S13: 0.2045 REMARK 3 S21: 0.4992 S22: 0.0920 S23: -0.3745 REMARK 3 S31: 0.1716 S32: -0.4153 S33: -0.1399 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8FIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-22. REMARK 100 THE DEPOSITION ID IS D_1000269111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953739 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : 1 VERTICAL AND 2 HORIZONTAL REMARK 200 FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.799 REMARK 200 RESOLUTION RANGE LOW (A) : 48.291 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 1.15700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5KEG REMARK 200 REMARK 200 REMARK: FLATTENED NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A3A-E72A (50 MM MES PH 6.0, 100 MM REMARK 280 NACL, 1 MM TCEP, 0.2 MM EDTA) WAS MIXED WITH OLIGONUCLEOTIDES REMARK 280 (10 MM TRIS/HCL PH 7.9, 1 MM EDTA) AT 0.85 MM AND 1.7 MM REMARK 280 RESPECTIVELY. DILUTION WAS DONE WITH PROTEIN BUFFER. THE MIXTURE REMARK 280 WAS ADDED TO CRYSTALLIZATION LIQUID 1 TO 1 AND THE MIXTURE WAS REMARK 280 PIPETTED ON SILICONIZED GLASS DISKS AND SEALED ON TOP OF A REMARK 280 RESERVOIR OF CRYSTALLIZATION LIQUID FOR HANGING DROP REMARK 280 CRYSTALLIZATION AT 12 DEGREES CELSIUS. THE CRYSTALLIZATION REMARK 280 LIQUID HAS THE FOLLOWING COMPOSITION: 100 MM BICINE AT PH 6.6, REMARK 280 200 MM NACL, 20 MM PUTRESCINE, 1 MM TCEP, 1 MM INOSITOL REMARK 280 HEXAPHOSPHATE (PHYTIC ACID) AND 45 % PENTAERYTHRITOL PROPOXYLATE REMARK 280 (5/4 PO/OH), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.18250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 PRO A 9 REMARK 465 ASP A 49 REMARK 465 GLN A 50 REMARK 465 LEU A 63 REMARK 465 CYS A 64 REMARK 465 GLY A 65 REMARK 465 PHE A 66 REMARK 465 GLN A 197 REMARK 465 GLY A 198 REMARK 465 ASN A 199 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 GLY B 8 REMARK 465 PRO B 9 REMARK 465 ASP B 49 REMARK 465 GLN B 197 REMARK 465 GLY B 198 REMARK 465 ASN B 199 REMARK 465 DG D -6 REMARK 465 DC D -5 REMARK 465 DC D 4 REMARK 465 DT D 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 10 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 11 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 16 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 ASN A 42 CG OD1 ND2 REMARK 470 VAL A 46 CG1 CG2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 ASN A 196 CG OD1 ND2 REMARK 470 ARG B 10 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 11 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 16 CG ND1 CD2 CE1 NE2 REMARK 470 ASN B 42 CG OD1 ND2 REMARK 470 VAL B 46 CG1 CG2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 GLN B 50 CG CD OE1 NE2 REMARK 470 GLN B 58 CG CD OE1 NE2 REMARK 470 LEU B 62 CG CD1 CD2 REMARK 470 LEU B 63 CG CD1 CD2 REMARK 470 PHE B 66 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 67 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 116 CG CD OE1 OE2 REMARK 470 HIS B 119 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 177 CG OD1 OD2 REMARK 470 GLU B 181 CG CD OE1 OE2 REMARK 470 ASN B 196 CG OD1 ND2 REMARK 470 DC E 4 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 DC E -5 N2 DG E 3 1.95 REMARK 500 O2 DC E -3 N2 DG E 1 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 28 NE - CZ - NH2 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 39 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC D -3 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG E -4 C3' - O3' - P ANGL. DEV. = -7.6 DEGREES REMARK 500 DT E -2 C3' - O3' - P ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 29 33.23 -90.10 REMARK 500 ASN A 42 -132.91 177.26 REMARK 500 VAL A 46 -130.27 53.15 REMARK 500 ASN A 117 68.05 -114.92 REMARK 500 HIS B 29 36.74 -96.23 REMARK 500 ASN B 117 70.15 -111.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 ND1 REMARK 620 2 CYS A 101 SG 93.3 REMARK 620 3 CYS A 106 SG 108.6 106.1 REMARK 620 4 UFP D 0 O4 92.5 94.5 149.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 70 ND1 REMARK 620 2 CYS B 101 SG 102.0 REMARK 620 3 CYS B 106 SG 120.6 108.2 REMARK 620 4 UFP E 0 O4 94.7 89.9 134.2 REMARK 620 N 1 2 3 DBREF 8FIJ A 1 199 UNP P31941 ABC3A_HUMAN 1 199 DBREF 8FIJ B 1 199 UNP P31941 ABC3A_HUMAN 1 199 DBREF 8FIJ D -6 5 PDB 8FIJ 8FIJ -6 5 DBREF 8FIJ E -6 5 PDB 8FIJ 8FIJ -6 5 SEQRES 1 A 199 MET GLU ALA SER PRO ALA SER GLY PRO ARG HIS LEU MET SEQRES 2 A 199 ASP PRO HIS ILE PHE THR SER ASN PHE ASN ASN GLY ILE SEQRES 3 A 199 GLY ARG HIS LYS THR TYR LEU CYS TYR GLU VAL GLU ARG SEQRES 4 A 199 LEU ASP ASN GLY THR SER VAL LYS MET ASP GLN HIS ARG SEQRES 5 A 199 GLY PHE LEU HIS ASN GLN ALA LYS ASN LEU LEU CYS GLY SEQRES 6 A 199 PHE TYR GLY ARG HIS ALA GLU LEU ARG PHE LEU ASP LEU SEQRES 7 A 199 VAL PRO SER LEU GLN LEU ASP PRO ALA GLN ILE TYR ARG SEQRES 8 A 199 VAL THR TRP PHE ILE SER TRP SER PRO CYS PHE SER TRP SEQRES 9 A 199 GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU GLN GLU ASN SEQRES 10 A 199 THR HIS VAL ARG LEU ARG ILE PHE ALA ALA ARG ILE TYR SEQRES 11 A 199 ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU GLN MET LEU SEQRES 12 A 199 ARG ASP ALA GLY ALA GLN VAL SER ILE MET THR TYR ASP SEQRES 13 A 199 GLU PHE LYS HIS CYS TRP ASP THR PHE VAL ASP HIS GLN SEQRES 14 A 199 GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU ASP GLU HIS SEQRES 15 A 199 SER GLN ALA LEU SER GLY ARG LEU ARG ALA ILE LEU GLN SEQRES 16 A 199 ASN GLN GLY ASN SEQRES 1 B 199 MET GLU ALA SER PRO ALA SER GLY PRO ARG HIS LEU MET SEQRES 2 B 199 ASP PRO HIS ILE PHE THR SER ASN PHE ASN ASN GLY ILE SEQRES 3 B 199 GLY ARG HIS LYS THR TYR LEU CYS TYR GLU VAL GLU ARG SEQRES 4 B 199 LEU ASP ASN GLY THR SER VAL LYS MET ASP GLN HIS ARG SEQRES 5 B 199 GLY PHE LEU HIS ASN GLN ALA LYS ASN LEU LEU CYS GLY SEQRES 6 B 199 PHE TYR GLY ARG HIS ALA GLU LEU ARG PHE LEU ASP LEU SEQRES 7 B 199 VAL PRO SER LEU GLN LEU ASP PRO ALA GLN ILE TYR ARG SEQRES 8 B 199 VAL THR TRP PHE ILE SER TRP SER PRO CYS PHE SER TRP SEQRES 9 B 199 GLY CYS ALA GLY GLU VAL ARG ALA PHE LEU GLN GLU ASN SEQRES 10 B 199 THR HIS VAL ARG LEU ARG ILE PHE ALA ALA ARG ILE TYR SEQRES 11 B 199 ASP TYR ASP PRO LEU TYR LYS GLU ALA LEU GLN MET LEU SEQRES 12 B 199 ARG ASP ALA GLY ALA GLN VAL SER ILE MET THR TYR ASP SEQRES 13 B 199 GLU PHE LYS HIS CYS TRP ASP THR PHE VAL ASP HIS GLN SEQRES 14 B 199 GLY CYS PRO PHE GLN PRO TRP ASP GLY LEU ASP GLU HIS SEQRES 15 B 199 SER GLN ALA LEU SER GLY ARG LEU ARG ALA ILE LEU GLN SEQRES 16 B 199 ASN GLN GLY ASN SEQRES 1 D 12 DG DC DG DC DT DT UFP DG DC DG DC DT SEQRES 1 E 12 DG DC DG DC DT DT UFP DG DC DG DC DT HET UFP D 0 20 HET UFP E 0 20 HET ZN A 201 1 HET PO4 A 202 5 HET PO4 A 203 5 HET PO4 A 204 5 HET ZN B 201 1 HET PO4 B 202 5 HET PO4 B 203 5 HET PO4 B 204 5 HETNAM UFP 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 3 UFP 2(C9 H12 F N2 O8 P) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 PO4 6(O4 P 3-) FORMUL 13 HOH *2(H2 O) HELIX 1 AA1 ASP A 14 ASN A 23 1 10 HELIX 2 AA2 HIS A 70 GLN A 83 1 14 HELIX 3 AA3 GLY A 105 ASN A 117 1 13 HELIX 4 AA4 LEU A 135 ALA A 146 1 12 HELIX 5 AA5 THR A 154 VAL A 166 1 13 HELIX 6 AA6 GLY A 178 ASN A 196 1 19 HELIX 7 AA7 ASP B 14 PHE B 22 1 9 HELIX 8 AA8 HIS B 70 GLN B 83 1 14 HELIX 9 AA9 GLY B 105 ASN B 117 1 13 HELIX 10 AB1 LEU B 135 ALA B 146 1 12 HELIX 11 AB2 THR B 154 VAL B 166 1 13 HELIX 12 AB3 GLY B 178 ASN B 196 1 19 SHEET 1 AA1 5 PHE A 54 HIS A 56 0 SHEET 2 AA1 5 TYR A 32 LEU A 40 -1 N LEU A 33 O LEU A 55 SHEET 3 AA1 5 ILE A 89 TRP A 98 -1 O PHE A 95 N CYS A 34 SHEET 4 AA1 5 VAL A 120 ARG A 128 1 O ARG A 121 N TYR A 90 SHEET 5 AA1 5 GLN A 149 ILE A 152 1 O GLN A 149 N ILE A 124 SHEET 1 AA2 3 SER B 45 LYS B 47 0 SHEET 2 AA2 3 TYR B 32 LEU B 40 -1 N ARG B 39 O VAL B 46 SHEET 3 AA2 3 GLY B 53 HIS B 56 -1 O LEU B 55 N LEU B 33 SHEET 1 AA3 5 SER B 45 LYS B 47 0 SHEET 2 AA3 5 TYR B 32 LEU B 40 -1 N ARG B 39 O VAL B 46 SHEET 3 AA3 5 TYR B 90 TRP B 98 -1 O PHE B 95 N CYS B 34 SHEET 4 AA3 5 VAL B 120 ARG B 128 1 O ARG B 121 N TYR B 90 SHEET 5 AA3 5 GLN B 149 ILE B 152 1 O GLN B 149 N ILE B 124 LINK O3' DT D -1 P UFP D 0 1555 1555 1.61 LINK O3' UFP D 0 P DG D 1 1555 1555 1.61 LINK O3' DT E -1 P UFP E 0 1555 1555 1.60 LINK O3' UFP E 0 P DG E 1 1555 1555 1.61 LINK ND1 HIS A 70 ZN ZN A 201 1555 1555 2.27 LINK SG CYS A 101 ZN ZN A 201 1555 1555 2.39 LINK SG CYS A 106 ZN ZN A 201 1555 1555 2.12 LINK ZN ZN A 201 O4 UFP D 0 1555 1555 2.14 LINK ND1 HIS B 70 ZN ZN B 201 1555 1555 2.00 LINK SG CYS B 101 ZN ZN B 201 1555 1555 2.44 LINK SG CYS B 106 ZN ZN B 201 1555 1555 2.13 LINK ZN ZN B 201 O4 UFP E 0 1555 1555 1.94 CRYST1 49.943 56.365 90.113 90.00 104.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020023 0.000000 0.005359 0.00000 SCALE2 0.000000 0.017742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011488 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.123951 0.042222 0.991390 6.47408 1 MTRIX2 2 0.015743 -0.999052 0.040580 13.41176 1 MTRIX3 2 0.992163 0.010578 -0.124498 -6.22090 1 MTRIX1 3 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 3 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 3 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 4 0.079336 0.036307 0.996187 8.08412 1 MTRIX2 4 -0.066188 -0.996939 0.041606 16.44061 1 MTRIX3 4 0.994648 -0.069236 -0.076690 -5.73424 1