HEADER TRANSFERASE 20-DEC-22 8FJN TITLE CRYSTAL STRUCTURE OF THE TRYPANOSOMA BRUCEI DOT1A HISTONE H3K76 TITLE 2 METHYLTRANSFERASE IN COMPLEX WITH ADOHCY - C2221 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-79 SPECIFIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE H3-K79 METHYLTRANSFERASE, DOT1A; COMPND 5 EC: 2.1.1.360; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 GENE: TB08.26N11.380, TB927.8.1920; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HISTONE LYSINE METHYLTRANSFERASE, HISTONE-MODIFYING ENZYME, DOT1A, KEYWDS 2 TRYPANOSOMA BRUCEI, ADOHCY COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.S.FRISBIE,H.HASHIMOTO,E.W.DEBLER REVDAT 2 04-SEP-24 8FJN 1 JRNL REVDAT 1 07-FEB-24 8FJN 0 JRNL AUTH V.S.FRISBIE,H.HASHIMOTO,Y.XIE,F.N.DE LUNA VITORINO,J.BAEZA, JRNL AUTH 2 T.NGUYEN,Z.YUAN,J.KISELAR,B.A.GARCIA,E.W.DEBLER JRNL TITL TWO DOT1 ENZYMES COOPERATIVELY MEDIATE EFFICIENT JRNL TITL 2 UBIQUITIN-INDEPENDENT HISTONE H3 LYSINE 76 TRI-METHYLATION JRNL TITL 3 IN KINETOPLASTIDS. JRNL REF NAT COMMUN V. 15 2467 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38503750 JRNL DOI 10.1038/S41467-024-46637-6 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.0 REMARK 3 NUMBER OF REFLECTIONS : 13142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4900 - 3.5900 0.99 3438 179 0.1709 0.1913 REMARK 3 2 3.5900 - 2.8500 0.99 3290 171 0.1859 0.2098 REMARK 3 3 2.8500 - 2.4900 0.81 2672 139 0.2004 0.2326 REMARK 3 4 2.4900 - 2.2600 0.58 1903 107 0.2025 0.2486 REMARK 3 5 2.2600 - 2.1000 0.36 1187 56 0.1884 0.2679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.178 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1953 REMARK 3 ANGLE : 0.588 2638 REMARK 3 CHIRALITY : 0.040 287 REMARK 3 PLANARITY : 0.005 339 REMARK 3 DIHEDRAL : 13.765 731 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1892 -5.6464 -10.3836 REMARK 3 T TENSOR REMARK 3 T11: 0.4031 T22: 0.2264 REMARK 3 T33: 0.1853 T12: -0.0524 REMARK 3 T13: 0.0202 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.0862 L22: 2.2121 REMARK 3 L33: 4.3201 L12: 0.7015 REMARK 3 L13: 0.3085 L23: -0.0377 REMARK 3 S TENSOR REMARK 3 S11: 0.0818 S12: -0.1002 S13: -0.0670 REMARK 3 S21: 0.4270 S22: -0.0992 S23: -0.1538 REMARK 3 S31: 0.3009 S32: -0.4737 S33: 0.0140 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5103 4.4579 -22.2408 REMARK 3 T TENSOR REMARK 3 T11: 0.2791 T22: 0.0947 REMARK 3 T33: 0.1396 T12: -0.0192 REMARK 3 T13: 0.0177 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 4.6316 L22: 3.1437 REMARK 3 L33: 4.6135 L12: -0.8302 REMARK 3 L13: 1.0290 L23: -0.6195 REMARK 3 S TENSOR REMARK 3 S11: 0.1299 S12: -0.1624 S13: 0.0909 REMARK 3 S21: 0.1643 S22: -0.0409 S23: 0.0338 REMARK 3 S31: -0.8475 S32: -0.0549 S33: -0.0480 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9573 12.8814 -20.1523 REMARK 3 T TENSOR REMARK 3 T11: 0.7197 T22: 0.1903 REMARK 3 T33: 0.3035 T12: 0.0727 REMARK 3 T13: 0.0924 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.1036 L22: 0.8195 REMARK 3 L33: 4.5649 L12: -0.4719 REMARK 3 L13: -0.3064 L23: 0.2731 REMARK 3 S TENSOR REMARK 3 S11: 0.0784 S12: -0.1176 S13: 0.2582 REMARK 3 S21: 0.2242 S22: -0.0535 S23: 0.1456 REMARK 3 S31: -1.4193 S32: 0.0727 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9136 -5.3843 -34.4459 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.1889 REMARK 3 T33: 0.1830 T12: -0.0228 REMARK 3 T13: 0.0027 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.0305 L22: 3.1200 REMARK 3 L33: 2.5664 L12: -0.7395 REMARK 3 L13: -0.0311 L23: 0.2208 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: 0.0144 S13: 0.0304 REMARK 3 S21: -0.0592 S22: -0.0005 S23: 0.2868 REMARK 3 S31: 0.0194 S32: -0.4877 S33: 0.0188 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5960 -11.8099 -24.6959 REMARK 3 T TENSOR REMARK 3 T11: 0.3512 T22: 0.2603 REMARK 3 T33: 0.2614 T12: -0.1424 REMARK 3 T13: 0.0545 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.8548 L22: 2.4450 REMARK 3 L33: 3.3126 L12: 0.0293 REMARK 3 L13: 0.2052 L23: -0.6369 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.1621 S13: -0.1026 REMARK 3 S21: 0.5952 S22: -0.1215 S23: 0.2009 REMARK 3 S31: 0.7660 S32: -0.6230 S33: 0.1355 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000270352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 42.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 8,000, 200 MM CALCIUM REMARK 280 ACETATE, 100 MM MES-NAOH, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.97350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.97350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.92100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.71150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.92100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.71150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.97350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.92100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.71150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 84.97350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.92100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 29.71150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 39 REMARK 465 PRO A 40 REMARK 465 HIS A 41 REMARK 465 MET A 42 REMARK 465 PRO A 43 REMARK 465 LYS A 44 REMARK 465 ASP A 94 REMARK 465 ILE A 95 REMARK 465 LYS A 96 REMARK 465 ARG A 97 REMARK 465 ILE A 98 REMARK 465 THR A 99 REMARK 465 GLU A 100 REMARK 465 VAL A 101 REMARK 465 SER A 102 REMARK 465 GLY A 103 REMARK 465 SER A 104 REMARK 465 ARG A 105 REMARK 465 HIS A 106 REMARK 465 LEU A 107 REMARK 465 CYS A 108 REMARK 465 ALA A 109 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 110 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 220 O HOH A 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS A 198 HH11 ARG A 260 7454 1.57 REMARK 500 OG SER A 185 CG ARG A 285 5555 2.15 REMARK 500 O HOH A 485 O HOH A 492 3554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 206 -8.26 75.94 REMARK 500 HIS A 252 24.58 -141.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 69 SG REMARK 620 2 CYS A 72 SG 116.8 REMARK 620 3 CYS A 77 SG 106.0 109.6 REMARK 620 4 CYS A 79 SG 110.6 99.6 114.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 207 OE2 REMARK 620 2 GLU A 207 OE1 36.2 REMARK 620 3 ARG A 236 O 84.4 110.6 REMARK 620 4 HOH A 461 O 77.7 106.0 81.0 REMARK 620 5 HOH A 504 O 159.6 147.4 101.5 84.0 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8FJM RELATED DB: PDB REMARK 900 SAME COMPLEX IN DIFFERENT SPACE GROUP DBREF 8FJN A 43 295 UNP Q581Z0 Q581Z0_TRYB2 43 295 SEQADV 8FJN GLY A 39 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJN PRO A 40 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJN HIS A 41 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJN MET A 42 UNP Q581Z0 EXPRESSION TAG SEQADV 8FJN SER A 187 UNP Q581Z0 PRO 187 VARIANT SEQRES 1 A 257 GLY PRO HIS MET PRO LYS GLY GLU LEU GLY ALA GLY THR SEQRES 2 A 257 PRO HIS GLU PRO TYR ASN LEU PRO LEU ARG GLY ASN PRO SEQRES 3 A 257 ASN LYS SER GLY CYS HIS HIS CYS LEU ALA ASP GLN CYS SEQRES 4 A 257 HIS CYS VAL PHE PHE GLU ARG LEU LEU ASP ALA THR PHE SEQRES 5 A 257 ARG ARG LEU ASP ILE LYS ARG ILE THR GLU VAL SER GLY SEQRES 6 A 257 SER ARG HIS LEU CYS ALA LYS SER LEU LEU PRO THR PHE SEQRES 7 A 257 VAL SER ARG MET VAL ARG LEU MET GLU ILE THR SER GLU SEQRES 8 A 257 ASP THR PHE TYR ASP LEU GLY CYS GLY ASN GLY SER ILE SEQRES 9 A 257 LEU PHE GLN VAL ALA PHE LEU THR GLY ALA ARG CYS VAL SEQRES 10 A 257 GLY ILE GLU ILE SER GLU HIS ASN ALA LYS VAL ALA LYS SEQRES 11 A 257 LYS ALA TRP GLU VAL ILE ARG PRO GLU LEU GLU GLY SER SEQRES 12 A 257 SER GLY ARG SER MET SER GLU VAL ASN ILE ILE THR SER SEQRES 13 A 257 ASP MET THR LYS ILE LEU ALA ASP GLU ARG LEU PHE GLU SEQRES 14 A 257 SER GLU ARG GLY LYS THR VAL ILE LEU LEU SER ASN LEU SEQRES 15 A 257 LEU PHE PRO LYS SER LEU THR HIS TYR LEU SER GLU ARG SEQRES 16 A 257 PHE ARG ARG VAL PRO SER GLY THR ARG ILE LEU CYS PHE SEQRES 17 A 257 ASP ASP LEU TYR PRO HIS SER ARG SER VAL ALA ALA ILE SEQRES 18 A 257 ARG ASP PRO GLU ALA PHE ARG LEU PHE ALA MET THR ASP SEQRES 19 A 257 TYR ARG TRP GLN GLU CYS SER VAL GLU TRP CYS THR ARG SEQRES 20 A 257 ASP GLY PRO PHE PHE ILE HIS ARG ARG ARG HET SAH A 301 45 HET ZN A 302 1 HET CA A 303 1 HET CL A 304 1 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 2 SAH C14 H20 N6 O5 S FORMUL 3 ZN ZN 2+ FORMUL 4 CA CA 2+ FORMUL 5 CL CL 1- FORMUL 6 HOH *130(H2 O) HELIX 1 AA1 HIS A 78 LEU A 93 1 16 HELIX 2 AA2 LEU A 113 MET A 124 1 12 HELIX 3 AA3 GLY A 140 GLY A 151 1 12 HELIX 4 AA4 SER A 160 GLY A 183 1 24 HELIX 5 AA5 ASP A 195 ALA A 201 1 7 HELIX 6 AA6 PHE A 206 ARG A 210 5 5 HELIX 7 AA7 PRO A 223 ARG A 235 1 13 HELIX 8 AA8 VAL A 256 ASP A 261 1 6 HELIX 9 AA9 ASP A 261 LEU A 267 1 7 SHEET 1 AA1 7 VAL A 189 THR A 193 0 SHEET 2 AA1 7 ARG A 153 GLU A 158 1 N GLY A 156 O ILE A 192 SHEET 3 AA1 7 THR A 131 LEU A 135 1 N PHE A 132 O VAL A 155 SHEET 4 AA1 7 THR A 213 LEU A 217 1 O VAL A 214 N TYR A 133 SHEET 5 AA1 7 ARG A 242 CYS A 245 1 O ARG A 242 N ILE A 215 SHEET 6 AA1 7 GLY A 287 ARG A 294 -1 O PHE A 290 N CYS A 245 SHEET 7 AA1 7 PHE A 268 TRP A 275 -1 N TRP A 275 O GLY A 287 LINK SG CYS A 69 ZN ZN A 302 1555 1555 2.33 LINK SG CYS A 72 ZN ZN A 302 1555 1555 2.33 LINK SG CYS A 77 ZN ZN A 302 1555 1555 2.32 LINK SG CYS A 79 ZN ZN A 302 1555 1555 2.32 LINK OE2 GLU A 207 CA CA A 303 1555 1555 2.54 LINK OE1 GLU A 207 CA CA A 303 1555 3554 2.35 LINK O ARG A 236 CA CA A 303 1555 1555 2.20 LINK CA CA A 303 O HOH A 461 1555 1555 2.18 LINK CA CA A 303 O HOH A 504 1555 3554 2.32 CRYST1 57.842 59.423 169.947 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017288 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005884 0.00000