HEADER PROTEIN BINDING 08-JAN-23 8FRR TITLE WILD-TYPE MYOCILIN OLFACTOMEDIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOCILIN, C-TERMINAL FRAGMENT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: OLFACTOMEDIN DOMAIN; COMPND 5 SYNONYM: MYOCILIN 35 KDA N-TERMINAL FRAGMENT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYOC, GLC1A, TIGR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYOCILIN, OLFACTOMEDIN, GLAUCOMA, BETA-PROPELLER, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.T.MA,R.L.LIEBERMAN,D.J.E.HUARD REVDAT 1 17-JAN-24 8FRR 0 JRNL AUTH E.G.SACCUZZO,M.D.MEBRAT,H.F.SCELSI,M.KIM,M.T.MA,X.SU, JRNL AUTH 2 S.E.HILL,E.RHEAUME,R.LI,M.P.TORRES,J.C.GUMBART,W.D.VAN HORN, JRNL AUTH 3 R.L.LIEBERMAN JRNL TITL COMPETITION BETWEEN INSIDE-OUT UNFOLDING AND PATHOGENIC JRNL TITL 2 AGGREGATION IN AN AMYLOID-FORMING BETA-PROPELLER. JRNL REF NAT COMMUN V. 15 155 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38168102 JRNL DOI 10.1038/S41467-023-44479-2 REMARK 2 REMARK 2 RESOLUTION. 1.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 62786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.190 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.0600 - 3.0600 0.97 4527 151 0.1426 0.1617 REMARK 3 2 3.0600 - 2.4300 0.99 4551 151 0.1492 0.1498 REMARK 3 3 2.4300 - 2.1200 0.98 4515 143 0.1306 0.1405 REMARK 3 4 2.1200 - 1.9300 0.95 4327 140 0.1249 0.1362 REMARK 3 5 1.9300 - 1.7900 0.97 4454 146 0.1246 0.1396 REMARK 3 6 1.7900 - 1.6800 0.97 4377 146 0.1261 0.1361 REMARK 3 7 1.6800 - 1.6000 0.96 4417 145 0.1285 0.1576 REMARK 3 8 1.6000 - 1.5300 0.96 4324 143 0.1306 0.1583 REMARK 3 9 1.5300 - 1.4700 0.92 4211 145 0.1374 0.1582 REMARK 3 10 1.4700 - 1.4200 0.95 4329 142 0.1468 0.1908 REMARK 3 11 1.4200 - 1.3700 0.94 4266 143 0.1603 0.1997 REMARK 3 12 1.3700 - 1.3400 0.94 4256 129 0.1671 0.1773 REMARK 3 13 1.3400 - 1.3000 0.93 4244 149 0.1731 0.2049 REMARK 3 14 1.3000 - 1.2700 0.88 3987 128 0.1877 0.2020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 NULL REMARK 3 ANGLE : 1.582 NULL REMARK 3 CHIRALITY : 0.118 350 REMARK 3 PLANARITY : 0.014 418 REMARK 3 DIHEDRAL : 6.616 335 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2344 -12.6017 -1.2836 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.0826 REMARK 3 T33: 0.1338 T12: -0.0198 REMARK 3 T13: 0.0003 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.9485 L22: 0.9866 REMARK 3 L33: 0.9127 L12: 0.4653 REMARK 3 L13: 0.3964 L23: 0.0430 REMARK 3 S TENSOR REMARK 3 S11: -0.0673 S12: -0.0382 S13: -0.2920 REMARK 3 S21: -0.0186 S22: 0.0466 S23: 0.0128 REMARK 3 S31: 0.0818 S32: -0.0647 S33: -0.0057 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9559 -6.5764 -10.9878 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.0827 REMARK 3 T33: 0.0936 T12: 0.0038 REMARK 3 T13: -0.0022 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.9223 L22: 1.3587 REMARK 3 L33: 2.2977 L12: -0.1291 REMARK 3 L13: -0.1465 L23: 0.8771 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: 0.0510 S13: -0.0146 REMARK 3 S21: 0.0094 S22: -0.0488 S23: -0.0019 REMARK 3 S31: 0.1278 S32: 0.0056 S33: 0.0077 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8281 -3.2599 -9.5393 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.1001 REMARK 3 T33: 0.1033 T12: -0.0040 REMARK 3 T13: 0.0042 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.0366 L22: 1.2171 REMARK 3 L33: 1.1926 L12: -0.4767 REMARK 3 L13: -0.1293 L23: 0.1922 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: -0.0397 S13: 0.0293 REMARK 3 S21: 0.0010 S22: -0.0433 S23: -0.1095 REMARK 3 S31: 0.0079 S32: 0.1276 S33: 0.0136 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7857 2.9520 -14.6558 REMARK 3 T TENSOR REMARK 3 T11: 0.1280 T22: 0.1327 REMARK 3 T33: 0.1479 T12: 0.0054 REMARK 3 T13: 0.0374 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.1217 L22: 0.7531 REMARK 3 L33: 0.6699 L12: -0.0011 REMARK 3 L13: -0.6852 L23: 0.1273 REMARK 3 S TENSOR REMARK 3 S11: 0.2043 S12: 0.0883 S13: 0.2646 REMARK 3 S21: -0.1193 S22: -0.0893 S23: -0.1749 REMARK 3 S31: -0.1527 S32: 0.0331 S33: -0.0554 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 328 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9200 4.6431 -20.3253 REMARK 3 T TENSOR REMARK 3 T11: 0.1325 T22: 0.1269 REMARK 3 T33: 0.1013 T12: 0.0230 REMARK 3 T13: 0.0103 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.3825 L22: 1.2003 REMARK 3 L33: 0.9502 L12: -0.6699 REMARK 3 L13: -0.4736 L23: 0.2303 REMARK 3 S TENSOR REMARK 3 S11: 0.1482 S12: 0.2591 S13: 0.1645 REMARK 3 S21: -0.2481 S22: -0.1336 S23: -0.0887 REMARK 3 S31: -0.1437 S32: -0.0552 S33: -0.0123 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 370 THROUGH 392 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6732 2.0010 -12.0374 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.0969 REMARK 3 T33: 0.0943 T12: 0.0091 REMARK 3 T13: -0.0106 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.7727 L22: 0.7382 REMARK 3 L33: 0.9726 L12: -0.2070 REMARK 3 L13: -0.4219 L23: -0.1931 REMARK 3 S TENSOR REMARK 3 S11: 0.0393 S12: 0.0784 S13: 0.0832 REMARK 3 S21: -0.0400 S22: -0.0503 S23: 0.0155 REMARK 3 S31: -0.0269 S32: -0.0739 S33: 0.0060 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 393 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5182 5.1011 -19.8221 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.1993 REMARK 3 T33: 0.1137 T12: 0.0604 REMARK 3 T13: -0.0333 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.5127 L22: 1.5245 REMARK 3 L33: 1.8510 L12: 0.2495 REMARK 3 L13: -0.6668 L23: 0.3671 REMARK 3 S TENSOR REMARK 3 S11: 0.0971 S12: 0.4364 S13: 0.1073 REMARK 3 S21: -0.2333 S22: -0.1884 S23: 0.1648 REMARK 3 S31: -0.1520 S32: -0.2410 S33: 0.0161 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1156 0.2475 -6.9070 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.1017 REMARK 3 T33: 0.0949 T12: 0.0053 REMARK 3 T13: -0.0044 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.3004 L22: 0.9548 REMARK 3 L33: 0.9278 L12: -0.1054 REMARK 3 L13: -0.2785 L23: -0.0613 REMARK 3 S TENSOR REMARK 3 S11: 0.0488 S12: 0.0858 S13: -0.0004 REMARK 3 S21: -0.0158 S22: -0.0317 S23: 0.0904 REMARK 3 S31: -0.0109 S32: -0.1605 S33: -0.0038 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 455 THROUGH 467 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9880 -5.8212 -4.7366 REMARK 3 T TENSOR REMARK 3 T11: 0.1265 T22: 0.1960 REMARK 3 T33: 0.1674 T12: -0.0126 REMARK 3 T13: -0.0050 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.5540 L22: 0.2252 REMARK 3 L33: 1.3351 L12: -0.2432 REMARK 3 L13: 0.4091 L23: -0.5258 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: 0.1174 S13: -0.1028 REMARK 3 S21: -0.0308 S22: 0.0386 S23: 0.1231 REMARK 3 S31: 0.0696 S32: -0.2742 S33: -0.0832 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 468 THROUGH 484 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5025 -6.1086 -1.5835 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.0867 REMARK 3 T33: 0.1071 T12: -0.0001 REMARK 3 T13: 0.0022 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.0226 L22: 1.4984 REMARK 3 L33: 2.1884 L12: 0.2810 REMARK 3 L13: 0.1942 L23: 0.4922 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.0317 S13: -0.0885 REMARK 3 S21: 0.0775 S22: -0.0404 S23: 0.0030 REMARK 3 S31: 0.0674 S32: -0.0631 S33: 0.0011 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 485 THROUGH 502 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8675 -9.1215 -2.0369 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.0627 REMARK 3 T33: 0.1020 T12: -0.0059 REMARK 3 T13: -0.0042 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.7248 L22: 1.3079 REMARK 3 L33: 1.3669 L12: 0.9355 REMARK 3 L13: 0.5937 L23: 0.1894 REMARK 3 S TENSOR REMARK 3 S11: 0.0587 S12: -0.0719 S13: -0.2351 REMARK 3 S21: 0.0554 S22: -0.0585 S23: 0.0328 REMARK 3 S31: 0.1022 S32: -0.0949 S33: 0.0033 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000271244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62921 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.270 REMARK 200 RESOLUTION RANGE LOW (A) : 27.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08769 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50150 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 8000, 0.05 M MAGNESIUM FORMATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.26350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 320 O HOH A 702 1.19 REMARK 500 HG1 THR A 343 OE2 GLU A 359 1.50 REMARK 500 HZ2 LYS A 398 O HOH A 701 1.54 REMARK 500 HZ1 LYS A 398 O HOH A 701 1.58 REMARK 500 NZ LYS A 398 O HOH A 701 1.89 REMARK 500 O HOH A 740 O HOH A 815 1.90 REMARK 500 O HOH A 849 O HOH A 869 1.94 REMARK 500 O HOH A 779 O HOH A 964 1.94 REMARK 500 O HOH A 811 O HOH A 846 2.00 REMARK 500 NH2 ARG A 320 O HOH A 702 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 267 CD1 TYR A 267 CE1 0.122 REMARK 500 PHE A 487 CE1 PHE A 487 CZ -0.149 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 324 -160.87 62.43 REMARK 500 ASP A 384 -168.50 -129.01 REMARK 500 TYR A 392 -169.67 -162.32 REMARK 500 TYR A 473 76.16 -156.73 REMARK 500 TYR A 473 75.09 -156.73 REMARK 500 LEU A 492 -16.97 86.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 982 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 326 O REMARK 620 2 ASP A 380 OD1 98.2 REMARK 620 3 LEU A 381 O 93.3 85.9 REMARK 620 4 ASP A 478 OD1 162.9 83.5 103.8 REMARK 620 5 ASP A 478 OD2 129.0 131.7 99.1 48.5 REMARK 620 6 HOH A 744 O 89.5 100.8 172.2 73.5 73.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 380 OD1 REMARK 620 2 ASP A 380 OD2 47.2 REMARK 620 3 ASN A 428 OD1 108.4 76.5 REMARK 620 4 ALA A 429 O 125.9 86.8 79.5 REMARK 620 5 ILE A 477 O 151.3 157.4 82.4 81.6 REMARK 620 6 ASP A 478 OD1 79.4 125.7 141.3 127.6 76.3 REMARK 620 7 HOH A 802 O 73.5 97.5 75.0 152.3 84.4 71.1 REMARK 620 8 HOH A 821 O 69.7 80.8 148.1 77.2 115.0 70.6 130.5 REMARK 620 N 1 2 3 4 5 6 7 DBREF 8FRR A 244 502 UNP Q99972 MYOC_HUMAN 244 502 SEQRES 1 A 259 GLY CYS GLY GLU LEU VAL TRP VAL GLY GLU PRO LEU THR SEQRES 2 A 259 LEU ARG THR ALA GLU THR ILE THR GLY LYS TYR GLY VAL SEQRES 3 A 259 TRP MET ARG ASP PRO LYS PRO THR TYR PRO TYR THR GLN SEQRES 4 A 259 GLU THR THR TRP ARG ILE ASP THR VAL GLY THR ASP VAL SEQRES 5 A 259 ARG GLN VAL PHE GLU TYR ASP LEU ILE SER GLN PHE MET SEQRES 6 A 259 GLN GLY TYR PRO SER LYS VAL HIS ILE LEU PRO ARG PRO SEQRES 7 A 259 LEU GLU SER THR GLY ALA VAL VAL TYR SER GLY SER LEU SEQRES 8 A 259 TYR PHE GLN GLY ALA GLU SER ARG THR VAL ILE ARG TYR SEQRES 9 A 259 GLU LEU ASN THR GLU THR VAL LYS ALA GLU LYS GLU ILE SEQRES 10 A 259 PRO GLY ALA GLY TYR HIS GLY GLN PHE PRO TYR SER TRP SEQRES 11 A 259 GLY GLY TYR THR ASP ILE ASP LEU ALA VAL ASP GLU ALA SEQRES 12 A 259 GLY LEU TRP VAL ILE TYR SER THR ASP GLU ALA LYS GLY SEQRES 13 A 259 ALA ILE VAL LEU SER LYS LEU ASN PRO GLU ASN LEU GLU SEQRES 14 A 259 LEU GLU GLN THR TRP GLU THR ASN ILE ARG LYS GLN SER SEQRES 15 A 259 VAL ALA ASN ALA PHE ILE ILE CYS GLY THR LEU TYR THR SEQRES 16 A 259 VAL SER SER TYR THR SER ALA ASP ALA THR VAL ASN PHE SEQRES 17 A 259 ALA TYR ASP THR GLY THR GLY ILE SER LYS THR LEU THR SEQRES 18 A 259 ILE PRO PHE LYS ASN ARG TYR LYS TYR SER SER MET ILE SEQRES 19 A 259 ASP TYR ASN PRO LEU GLU LYS LYS LEU PHE ALA TRP ASP SEQRES 20 A 259 ASN LEU ASN MET VAL THR TYR ASP ILE LYS LEU SER HET GOL A 601 14 HET CA A 602 1 HET NA A 603 1 HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 CA CA 2+ FORMUL 4 NA NA 1+ FORMUL 5 HOH *282(H2 O) HELIX 1 AA1 THR A 262 LYS A 266 5 5 HELIX 2 AA2 LEU A 303 GLY A 310 1 8 HELIX 3 AA3 GLN A 424 VAL A 426 5 3 SHEET 1 AA1 3 LEU A 248 VAL A 251 0 SHEET 2 AA1 3 ASN A 493 LEU A 501 -1 O LYS A 500 N VAL A 249 SHEET 3 AA1 3 LEU A 255 THR A 259 -1 N ARG A 258 O MET A 494 SHEET 1 AA2 4 LEU A 248 VAL A 251 0 SHEET 2 AA2 4 ASN A 493 LEU A 501 -1 O LYS A 500 N VAL A 249 SHEET 3 AA2 4 LYS A 485 ASP A 490 -1 N ASP A 490 O ASN A 493 SHEET 4 AA2 4 SER A 474 ASN A 480 -1 N ASP A 478 O PHE A 487 SHEET 1 AA3 4 GLY A 268 MET A 271 0 SHEET 2 AA3 4 THR A 285 ASP A 289 -1 O ILE A 288 N VAL A 269 SHEET 3 AA3 4 GLN A 297 TYR A 301 -1 O PHE A 299 N ARG A 287 SHEET 4 AA3 4 LYS A 314 ILE A 317 -1 O LYS A 314 N GLU A 300 SHEET 1 AA4 4 VAL A 328 TYR A 330 0 SHEET 2 AA4 4 SER A 333 GLN A 337 -1 O TYR A 335 N VAL A 328 SHEET 3 AA4 4 THR A 343 GLU A 348 -1 O TYR A 347 N LEU A 334 SHEET 4 AA4 4 THR A 353 GLU A 359 -1 O THR A 353 N GLU A 348 SHEET 1 AA5 4 ASP A 380 ASP A 384 0 SHEET 2 AA5 4 GLY A 387 TYR A 392 -1 O TRP A 389 N ALA A 382 SHEET 3 AA5 4 ALA A 400 LEU A 406 -1 O VAL A 402 N TYR A 392 SHEET 4 AA5 4 LEU A 413 ARG A 422 -1 O ILE A 421 N ILE A 401 SHEET 1 AA6 4 ASN A 428 ILE A 432 0 SHEET 2 AA6 4 THR A 435 VAL A 439 -1 O TYR A 437 N PHE A 430 SHEET 3 AA6 4 ALA A 447 ASP A 454 -1 O TYR A 453 N LEU A 436 SHEET 4 AA6 4 SER A 460 PHE A 467 -1 O ILE A 465 N VAL A 449 SSBOND 1 CYS A 245 CYS A 433 1555 1555 2.05 LINK O GLY A 326 NA NA A 603 1555 1555 2.54 LINK OD1 ASP A 380 CA CA A 602 1555 1555 2.96 LINK OD2 ASP A 380 CA CA A 602 1555 1555 2.35 LINK OD1 ASP A 380 NA NA A 603 1555 1555 2.31 LINK O LEU A 381 NA NA A 603 1555 1555 2.26 LINK OD1 ASN A 428 CA CA A 602 1555 1555 2.49 LINK O ALA A 429 CA CA A 602 1555 1555 2.40 LINK O ILE A 477 CA CA A 602 1555 1555 2.41 LINK OD1 ASP A 478 CA CA A 602 1555 1555 2.34 LINK OD1 ASP A 478 NA NA A 603 1555 1555 2.79 LINK OD2 ASP A 478 NA NA A 603 1555 1555 2.42 LINK CA CA A 602 O HOH A 802 1555 1555 2.45 LINK CA CA A 602 O HOH A 821 1555 1555 2.53 LINK NA NA A 603 O HOH A 744 1555 1555 2.36 CISPEP 1 TYR A 278 PRO A 279 0 6.18 CRYST1 49.468 50.527 50.873 90.00 96.25 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020215 0.000000 0.002214 0.00000 SCALE2 0.000000 0.019791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019774 0.00000