HEADER PROTEIN BINDING 13-JAN-23 8FTQ TITLE CRYSTAL STRUCTURE OF HRPN13 PRU DOMAIN IN COMPLEX WITH UBIQUITIN AND TITLE 2 XL44 CAVEAT 8FTQ RESIDUES LEU A 33 AND LYS A 34 THAT ARE NEXT TO EACH OTHER CAVEAT 2 8FTQ IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE CAVEAT 3 8FTQ BETWEEN C AND N IS 1.16 A. RESIDUES THR A 36 AND THR A 37 CAVEAT 4 8FTQ THAT ARE NEXT TO EACH OTHER IN THE SAMPLE SEQUENCE ARE NOT CAVEAT 5 8FTQ PROPERLY LINKED: DISTANCE BETWEEN C AND N IS 1.60 A. CAVEAT 6 8FTQ RESIDUES THR A 37 AND VAL A 38 THAT ARE NEXT TO EACH OTHER CAVEAT 7 8FTQ IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE CAVEAT 8 8FTQ BETWEEN C AND N IS 1.67 A. RESIDUES PRO B 89 AND SER B 90 CAVEAT 9 8FTQ THAT ARE NEXT TO EACH OTHER IN THE SAMPLE SEQUENCE ARE NOT CAVEAT 10 8FTQ PROPERLY LINKED: DISTANCE BETWEEN C AND N IS 1.03 A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASOMAL UBIQUITIN RECEPTOR ADRM1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 110 KDA CELL MEMBRANE GLYCOPROTEIN,GP110,ADHESION-REGULATING COMPND 5 MOLECULE 1,ARM-1,PROTEASOME REGULATORY PARTICLE NON-ATPASE 13,HRPN13, COMPND 6 RPN13 HOMOLOG; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UBIQUITIN; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADRM1, GP110; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PRSET; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: UBC; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PET3A KEYWDS PROTEASOME, RPN13, PROTAC, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.J.WALTERS,X.LU,M.CHANDRAVANSHI REVDAT 2 03-APR-24 8FTQ 1 REMARK REVDAT 1 27-MAR-24 8FTQ 0 JRNL AUTH X.LU,M.CHANDRAVANSHI,V.R.SABBASANI,S.GAIKWAD,V.K.HUGHITT, JRNL AUTH 2 N.GYABAAH-KESSIE,B.T.SCROGGINS,S.DAS,W.MYINT,M.E.CLAPP, JRNL AUTH 3 C.D.SCHWIETERS,M.A.DYBA,D.L.BOLHUIS,J.W.KOSCIELNIAK, JRNL AUTH 4 T.ANDRESSON,M.J.EMANUELE,N.G.BROWN,H.MATSUO,R.CHARI, JRNL AUTH 5 D.E.CITRIN,B.A.MOCK,R.E.SWENSON,K.J.WALTERS JRNL TITL A STRUCTURE-BASED DESIGNED SMALL MOLECULE DEPLETES HRPN13 JRNL TITL 2 PRU AND A SELECT GROUP OF KEN BOX PROTEINS. JRNL REF NAT COMMUN V. 15 2485 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38509117 JRNL DOI 10.1038/S41467-024-46644-7 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1-3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 32627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1400 - 4.8100 0.99 2610 161 0.1917 0.2092 REMARK 3 2 4.8100 - 3.8200 0.99 2594 152 0.1693 0.2135 REMARK 3 3 3.8200 - 3.3300 0.99 2602 136 0.2094 0.2037 REMARK 3 4 3.3300 - 3.0300 1.00 2600 158 0.2361 0.2939 REMARK 3 5 3.0300 - 2.8100 1.00 2609 137 0.2498 0.2864 REMARK 3 6 2.8100 - 2.6500 0.98 2550 137 0.2527 0.2714 REMARK 3 7 2.6500 - 2.5100 0.99 2598 131 0.2372 0.2529 REMARK 3 8 2.5100 - 2.4000 0.99 2569 131 0.2581 0.2872 REMARK 3 9 2.4000 - 2.3100 0.99 2578 147 0.2591 0.2735 REMARK 3 10 2.3100 - 2.2300 0.96 2511 115 0.3256 0.4053 REMARK 3 11 2.2300 - 2.1600 1.00 2626 128 0.2905 0.3247 REMARK 3 12 2.1600 - 2.1000 0.97 2519 128 0.2959 0.3388 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.259 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.735 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.027 3140 REMARK 3 ANGLE : 1.831 4234 REMARK 3 CHIRALITY : 0.124 456 REMARK 3 PLANARITY : 0.015 548 REMARK 3 DIHEDRAL : 15.229 1222 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FTQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000271303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06884 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41410 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID PH 4.6 AND 20% REMARK 280 PEG4000, MICROBATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.14150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 PHE A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 ASN A 20 REMARK 465 PRO A 134 REMARK 465 GLY A 135 REMARK 465 ALA A 136 REMARK 465 LEU A 137 REMARK 465 GLY A 138 REMARK 465 ALA A 139 REMARK 465 SER A 140 REMARK 465 GLY A 141 REMARK 465 SER A 142 REMARK 465 SER A 143 REMARK 465 GLY A 144 REMARK 465 HIS A 145 REMARK 465 GLU A 146 REMARK 465 LEU A 147 REMARK 465 SER A 148 REMARK 465 ALA A 149 REMARK 465 LEU A 150 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 GLY B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 PHE B 8 REMARK 465 PRO B 9 REMARK 465 SER B 10 REMARK 465 LEU B 11 REMARK 465 VAL B 12 REMARK 465 PRO B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 ARG B 16 REMARK 465 GLY B 17 REMARK 465 ALA B 18 REMARK 465 SER B 19 REMARK 465 ASN B 20 REMARK 465 PRO B 134 REMARK 465 GLY B 135 REMARK 465 ALA B 136 REMARK 465 LEU B 137 REMARK 465 GLY B 138 REMARK 465 ALA B 139 REMARK 465 SER B 140 REMARK 465 GLY B 141 REMARK 465 SER B 142 REMARK 465 SER B 143 REMARK 465 GLY B 144 REMARK 465 HIS B 145 REMARK 465 GLU B 146 REMARK 465 LEU B 147 REMARK 465 SER B 148 REMARK 465 ALA B 149 REMARK 465 LEU B 150 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 21 CG CD CE NZ REMARK 480 LYS B 21 CG CD CE NZ REMARK 480 ARG D 72 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 21 CB LYS A 21 CG -0.382 REMARK 500 SER A 32 N SER A 32 CA 0.166 REMARK 500 SER A 32 C LEU A 33 N 0.240 REMARK 500 LEU A 33 N LEU A 33 CA -0.163 REMARK 500 LEU A 33 C LEU A 33 O 0.166 REMARK 500 LEU A 33 C LYS A 34 N -0.179 REMARK 500 THR A 36 CA THR A 36 CB -0.239 REMARK 500 THR A 36 C THR A 37 N 0.265 REMARK 500 VAL A 38 CA VAL A 38 CB 0.151 REMARK 500 THR A 39 CA THR A 39 CB -0.264 REMARK 500 THR A 39 C THR A 39 O 0.153 REMARK 500 PRO A 40 CA PRO A 40 CB -0.243 REMARK 500 PRO A 40 CD PRO A 40 N 0.209 REMARK 500 PRO A 40 CA PRO A 40 C 0.173 REMARK 500 GLN A 87 CA GLN A 87 CB -0.195 REMARK 500 LYS B 21 CB LYS B 21 CG -0.271 REMARK 500 LYS B 30 N LYS B 30 CA 0.149 REMARK 500 LYS B 30 C LYS B 30 O 0.137 REMARK 500 SER B 32 CA SER B 32 C -0.163 REMARK 500 SER B 32 C LEU B 33 N 0.153 REMARK 500 THR B 37 C VAL B 38 N 0.164 REMARK 500 THR B 39 CA THR B 39 CB -0.166 REMARK 500 THR B 39 CB THR B 39 CG2 -0.229 REMARK 500 THR B 39 C THR B 39 O 0.189 REMARK 500 GLN B 87 CA GLN B 87 C 0.186 REMARK 500 PRO B 89 CD PRO B 89 N -0.097 REMARK 500 PRO B 89 C SER B 90 N -0.301 REMARK 500 ARG D 54 CA ARG D 54 CB 0.142 REMARK 500 ARG D 54 CB ARG D 54 CG -0.167 REMARK 500 ARG D 54 NE ARG D 54 CZ 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 21 CA - CB - CG ANGL. DEV. = 22.9 DEGREES REMARK 500 THR A 36 CA - CB - OG1 ANGL. DEV. = -18.0 DEGREES REMARK 500 THR A 36 CA - CB - CG2 ANGL. DEV. = 18.1 DEGREES REMARK 500 THR A 36 O - C - N ANGL. DEV. = -16.8 DEGREES REMARK 500 PRO A 40 N - CD - CG ANGL. DEV. = -11.5 DEGREES REMARK 500 SER B 32 CA - C - O ANGL. DEV. = 14.2 DEGREES REMARK 500 SER B 32 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 GLY B 35 C - N - CA ANGL. DEV. = -14.5 DEGREES REMARK 500 THR B 39 CA - CB - CG2 ANGL. DEV. = 9.9 DEGREES REMARK 500 CYS B 88 CB - CA - C ANGL. DEV. = 7.3 DEGREES REMARK 500 CYS B 88 O - C - N ANGL. DEV. = 17.5 DEGREES REMARK 500 PRO B 89 C - N - CA ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG D 54 NE - CZ - NH1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG D 54 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 55 1.31 82.32 REMARK 500 ASN A 130 68.97 -154.86 REMARK 500 SER B 55 1.07 82.77 REMARK 500 ASP B 78 -0.19 79.45 REMARK 500 ASN B 130 69.05 -155.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 32 LEU B 33 145.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 36 -26.10 REMARK 500 PRO B 89 -10.93 REMARK 500 REMARK 500 REMARK: NULL DBREF 8FTQ A 2 150 UNP Q16186 ADRM1_HUMAN 2 150 DBREF 8FTQ B 2 150 UNP Q16186 ADRM1_HUMAN 2 150 DBREF 8FTQ C 1 72 UNP P0CG48 UBC_HUMAN 1 72 DBREF 8FTQ D 1 72 UNP P0CG48 UBC_HUMAN 1 72 SEQRES 1 A 149 THR THR SER GLY ALA LEU PHE PRO SER LEU VAL PRO GLY SEQRES 2 A 149 SER ARG GLY ALA SER ASN LYS TYR LEU VAL GLU PHE ARG SEQRES 3 A 149 ALA GLY LYS MET SER LEU LYS GLY THR THR VAL THR PRO SEQRES 4 A 149 ASP LYS ARG LYS GLY LEU VAL TYR ILE GLN GLN THR ASP SEQRES 5 A 149 ASP SER LEU ILE HIS PHE CYS TRP LYS ASP ARG THR SER SEQRES 6 A 149 GLY ASN VAL GLU ASP ASP LEU ILE ILE PHE PRO ASP ASP SEQRES 7 A 149 CYS GLU PHE LYS ARG VAL PRO GLN CYS PRO SER GLY ARG SEQRES 8 A 149 VAL TYR VAL LEU LYS PHE LYS ALA GLY SER LYS ARG LEU SEQRES 9 A 149 PHE PHE TRP MET GLN GLU PRO LYS THR ASP GLN ASP GLU SEQRES 10 A 149 GLU HIS CYS ARG LYS VAL ASN GLU TYR LEU ASN ASN PRO SEQRES 11 A 149 PRO MET PRO GLY ALA LEU GLY ALA SER GLY SER SER GLY SEQRES 12 A 149 HIS GLU LEU SER ALA LEU SEQRES 1 B 149 THR THR SER GLY ALA LEU PHE PRO SER LEU VAL PRO GLY SEQRES 2 B 149 SER ARG GLY ALA SER ASN LYS TYR LEU VAL GLU PHE ARG SEQRES 3 B 149 ALA GLY LYS MET SER LEU LYS GLY THR THR VAL THR PRO SEQRES 4 B 149 ASP LYS ARG LYS GLY LEU VAL TYR ILE GLN GLN THR ASP SEQRES 5 B 149 ASP SER LEU ILE HIS PHE CYS TRP LYS ASP ARG THR SER SEQRES 6 B 149 GLY ASN VAL GLU ASP ASP LEU ILE ILE PHE PRO ASP ASP SEQRES 7 B 149 CYS GLU PHE LYS ARG VAL PRO GLN CYS PRO SER GLY ARG SEQRES 8 B 149 VAL TYR VAL LEU LYS PHE LYS ALA GLY SER LYS ARG LEU SEQRES 9 B 149 PHE PHE TRP MET GLN GLU PRO LYS THR ASP GLN ASP GLU SEQRES 10 B 149 GLU HIS CYS ARG LYS VAL ASN GLU TYR LEU ASN ASN PRO SEQRES 11 B 149 PRO MET PRO GLY ALA LEU GLY ALA SER GLY SER SER GLY SEQRES 12 B 149 HIS GLU LEU SER ALA LEU SEQRES 1 C 72 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 72 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 72 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 72 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 72 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 72 THR LEU HIS LEU VAL LEU ARG SEQRES 1 D 72 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 72 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 72 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 72 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 72 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 72 THR LEU HIS LEU VAL LEU ARG HET ZTO A 201 29 HET ZTO B 201 29 HETNAM ZTO N-(3-{[(3R)-5-FLUORO-2-OXO-2,3-DIHYDRO-1H-INDOL-3- HETNAM 2 ZTO YL]METHYL}PHENYL)-4-METHOXYBENZAMIDE FORMUL 5 ZTO 2(C23 H19 F N2 O3) FORMUL 7 HOH *101(H2 O) HELIX 1 AA1 GLN A 116 ASN A 130 1 15 HELIX 2 AA2 GLN B 116 ASN B 130 1 15 HELIX 3 AA3 THR C 22 GLY C 35 1 14 HELIX 4 AA4 PRO C 37 ASP C 39 5 3 HELIX 5 AA5 LEU C 56 ASN C 60 5 5 HELIX 6 AA6 THR D 22 GLY D 35 1 14 HELIX 7 AA7 PRO D 37 ASP D 39 5 3 HELIX 8 AA8 LEU D 56 ASN D 60 5 5 SHEET 1 AA1 5 THR A 37 PRO A 40 0 SHEET 2 AA1 5 VAL A 24 LYS A 34 -1 N SER A 32 O THR A 39 SHEET 3 AA1 5 GLY A 45 GLN A 51 -1 O VAL A 47 N PHE A 26 SHEET 4 AA1 5 ILE A 57 ASP A 63 -1 O CYS A 60 N TYR A 48 SHEET 5 AA1 5 VAL A 69 ILE A 75 -1 O LEU A 73 N PHE A 59 SHEET 1 AA2 5 THR A 37 PRO A 40 0 SHEET 2 AA2 5 VAL A 24 LYS A 34 -1 N SER A 32 O THR A 39 SHEET 3 AA2 5 ARG A 104 MET A 109 -1 O TRP A 108 N GLY A 29 SHEET 4 AA2 5 VAL A 93 PHE A 98 -1 N TYR A 94 O PHE A 107 SHEET 5 AA2 5 CYS A 80 ARG A 84 -1 N GLU A 81 O LYS A 97 SHEET 1 AA3 5 THR B 37 PRO B 40 0 SHEET 2 AA3 5 VAL B 24 LYS B 34 -1 N SER B 32 O THR B 39 SHEET 3 AA3 5 GLY B 45 GLN B 51 -1 O VAL B 47 N PHE B 26 SHEET 4 AA3 5 ILE B 57 ASP B 63 -1 O CYS B 60 N TYR B 48 SHEET 5 AA3 5 VAL B 69 ILE B 75 -1 O LEU B 73 N PHE B 59 SHEET 1 AA4 5 THR B 37 PRO B 40 0 SHEET 2 AA4 5 VAL B 24 LYS B 34 -1 N SER B 32 O THR B 39 SHEET 3 AA4 5 ARG B 104 MET B 109 -1 O TRP B 108 N GLY B 29 SHEET 4 AA4 5 VAL B 93 PHE B 98 -1 N TYR B 94 O PHE B 107 SHEET 5 AA4 5 CYS B 80 ARG B 84 -1 N GLU B 81 O LYS B 97 SHEET 1 AA5 5 ILE C 13 GLU C 16 0 SHEET 2 AA5 5 GLN C 2 THR C 7 -1 N ILE C 3 O LEU C 15 SHEET 3 AA5 5 THR C 66 LEU C 71 1 O LEU C 69 N LYS C 6 SHEET 4 AA5 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA5 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA6 5 ILE D 13 GLU D 16 0 SHEET 2 AA6 5 GLN D 2 THR D 7 -1 N ILE D 3 O LEU D 15 SHEET 3 AA6 5 THR D 66 LEU D 71 1 O LEU D 69 N LYS D 6 SHEET 4 AA6 5 GLN D 41 PHE D 45 -1 N ARG D 42 O VAL D 70 SHEET 5 AA6 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 LINK SG CYS A 88 C9 ZTO A 201 1555 1555 1.88 LINK SG CYS B 88 C9 ZTO B 201 1555 1555 2.23 CRYST1 53.350 90.283 65.027 90.00 113.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018744 0.000000 0.008049 0.00000 SCALE2 0.000000 0.011076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016736 0.00000