HEADER TRANSPORT PROTEIN 13-JAN-23 8FTU TITLE CRYSTAL STRUCTURE OF THE SNARE USE1 BOUND TO DSL1 COMPLEX SUBUNITS TITLE 2 SEC39 AND DSL1, REVISED USE1 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC39; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VESICLE TRANSPORT PROTEIN USE1; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN TRANSPORT PROTEIN DSL1; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS NRRL Y-1140; SOURCE 3 ORGANISM_TAXID: 284590; SOURCE 4 STRAIN: ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / SOURCE 5 WM37; SOURCE 6 ATCC: 8585; SOURCE 7 GENE: KLLA0_B05115G; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PQLINKH; SOURCE 13 MOL_ID: 2; SOURCE 14 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS NRRL Y-1140; SOURCE 15 ORGANISM_TAXID: 284590; SOURCE 16 STRAIN: ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / SOURCE 17 WM37; SOURCE 18 ATCC: 8585; SOURCE 19 GENE: KLLA0_F06644G; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PQLINKH; SOURCE 25 MOL_ID: 3; SOURCE 26 ORGANISM_SCIENTIFIC: KLUYVEROMYCES LACTIS NRRL Y-1140; SOURCE 27 ORGANISM_TAXID: 284590; SOURCE 28 STRAIN: ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / SOURCE 29 WM37; SOURCE 30 ATCC: 8585; SOURCE 31 GENE: KLLA0_C02695G; SOURCE 32 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 33 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 34 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 35 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 36 EXPRESSION_SYSTEM_PLASMID: PQLINKH KEYWDS MEMBRANE TRAFFICKING, SNARE PROTEIN, COPI, VESICLE, MULTISUBUNIT KEYWDS 2 TETHERING COMPLEX, DSL1 COMPLEX, CATCHR COMPLEX, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.TRAVIS,P.D.JEFFREY,F.M.HUGHSON REVDAT 4 28-FEB-24 8FTU 1 JRNL REVDAT 3 24-JAN-24 8FTU 1 JRNL REVDAT 2 17-JAN-24 8FTU 1 JRNL REVDAT 1 01-MAR-23 8FTU 0 SPRSDE 01-MAR-23 8FTU 6WC4 JRNL AUTH K.A.DAMICO,A.E.STANTON,J.D.SHIRKEY,S.M.TRAVIS,P.D.JEFFREY, JRNL AUTH 2 F.M.HUGHSON JRNL TITL STRUCTURE OF A MEMBRANE TETHERING COMPLEX INCORPORATING JRNL TITL 2 MULTIPLE SNARES. JRNL REF NAT.STRUCT.MOL.BIOL. V. 31 246 2024 JRNL REFN ESSN 1545-9985 JRNL PMID 38196032 JRNL DOI 10.1038/S41594-023-01164-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.M.TRAVIS,K.DAMICO,I.M.YU,C.MCMAHON,S.HAMID, REMARK 1 AUTH 2 G.RAMIREZ-ARELLANO,P.D.JEFFREY,F.M.HUGHSON REMARK 1 TITL STRUCTURAL BASIS FOR THE BINDING OF SNARES TO THE REMARK 1 TITL 2 MULTISUBUNIT TETHERING COMPLEX DSL1. REMARK 1 REF J BIOL CHEM V. 295 10125 2020 REMARK 1 REFN ESSN 1083-351X REMARK 1 PMID 32409579 REMARK 1 DOI 10.1093/NAR/GKW408 REMARK 2 REMARK 2 RESOLUTION. 5.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1-3660-000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 5.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.5 REMARK 3 NUMBER OF REFLECTIONS : 7036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.278 REMARK 3 R VALUE (WORKING SET) : 0.276 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6000 - 9.7000 0.99 1735 191 0.2411 0.2565 REMARK 3 2 9.7000 - 7.7400 1.00 1699 190 0.2611 0.2986 REMARK 3 3 7.7400 - 6.7800 1.00 1679 186 0.3496 0.3805 REMARK 3 4 6.7800 - 6.1600 0.61 1033 116 0.3962 0.4269 REMARK 3 5 6.1600 - 5.7300 0.11 187 20 0.4503 0.3472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.060 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 317.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 8410 REMARK 3 ANGLE : 1.856 11381 REMARK 3 CHIRALITY : 0.093 1318 REMARK 3 PLANARITY : 0.012 1433 REMARK 3 DIHEDRAL : 26.119 3152 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.1493 40.5827 -30.9085 REMARK 3 T TENSOR REMARK 3 T11: 1.5118 T22: 2.9094 REMARK 3 T33: 2.3294 T12: -0.1687 REMARK 3 T13: 0.4767 T23: -0.0933 REMARK 3 L TENSOR REMARK 3 L11: 0.0895 L22: -0.0833 REMARK 3 L33: 3.4210 L12: 0.1443 REMARK 3 L13: 1.4967 L23: 0.4588 REMARK 3 S TENSOR REMARK 3 S11: -0.5382 S12: 0.0509 S13: -0.0973 REMARK 3 S21: -0.6452 S22: -0.0569 S23: 0.1933 REMARK 3 S31: -1.4366 S32: 0.1049 S33: -0.1822 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FTU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000271365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932 REMARK 200 MONOCHROMATOR : SI(111) SILICON CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3, STARANISO 2.0.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7053 REMARK 200 RESOLUTION RANGE HIGH (A) : 5.726 REMARK 200 RESOLUTION RANGE LOW (A) : 29.601 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 6.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 29.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.81400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THIN RECTANGULAR PLATES, 200 X 200 X 20 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 7.5, 0.1 M NACL, 8% REMARK 280 (W/V) PEG 3350, 10% (V/V) ETHYLENE GLYCOL, 1 MM DITHIOTHREITOL. REMARK 280 CRYOPROTECTED WITH 30% (V/V) ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 120.39500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.92300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 120.39500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.92300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -26 REMARK 465 LYS A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 GLY A -17 REMARK 465 ALA A -16 REMARK 465 ALA A -15 REMARK 465 GLY A -14 REMARK 465 THR A -13 REMARK 465 SER A -12 REMARK 465 LEU A -11 REMARK 465 TYR A -10 REMARK 465 LYS A -9 REMARK 465 LYS A -8 REMARK 465 ALA A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ILE A 278 REMARK 465 PRO A 279 REMARK 465 GLU A 367 REMARK 465 SER A 368 REMARK 465 SER A 369 REMARK 465 THR A 370 REMARK 465 LEU A 371 REMARK 465 PHE A 372 REMARK 465 ASP A 373 REMARK 465 LYS A 374 REMARK 465 LEU A 375 REMARK 465 LEU A 639 REMARK 465 GLU A 640 REMARK 465 ASN A 641 REMARK 465 THR A 642 REMARK 465 GLN A 643 REMARK 465 ARG A 644 REMARK 465 SER A 645 REMARK 465 ASN A 646 REMARK 465 ASP A 647 REMARK 465 ASN A 648 REMARK 465 PHE A 649 REMARK 465 MET A 650 REMARK 465 SER A 651 REMARK 465 ASP A 652 REMARK 465 VAL A 653 REMARK 465 SER A 654 REMARK 465 THR A 655 REMARK 465 ASN A 656 REMARK 465 VAL A 657 REMARK 465 GLY A 658 REMARK 465 ASN A 659 REMARK 465 PHE A 660 REMARK 465 LEU A 661 REMARK 465 SER A 662 REMARK 465 GLY A 663 REMARK 465 LYS A 664 REMARK 465 PHE A 665 REMARK 465 GLN A 666 REMARK 465 TRP A 667 REMARK 465 ASN A 668 REMARK 465 ILE A 669 REMARK 465 GLY A 670 REMARK 465 GLY A 671 REMARK 465 ALA A 672 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 MET B 4 REMARK 465 THR B 5 REMARK 465 THR B 6 REMARK 465 ASP B 7 REMARK 465 LEU B 8 REMARK 465 GLN B 27 REMARK 465 ASP B 28 REMARK 465 ASP B 29 REMARK 465 GLU B 30 REMARK 465 LYS B 104 REMARK 465 ARG B 105 REMARK 465 ARG B 106 REMARK 465 TYR B 107 REMARK 465 SER B 108 REMARK 465 VAL B 109 REMARK 465 ASP B 110 REMARK 465 PHE B 111 REMARK 465 ASP B 112 REMARK 465 ALA B 113 REMARK 465 MET C 419 REMARK 465 GLY C 420 REMARK 465 SER C 421 REMARK 465 GLU C 422 REMARK 465 ASN C 423 REMARK 465 GLY C 509 REMARK 465 ASP C 510 REMARK 465 GLY C 511 REMARK 465 ASP C 512 REMARK 465 GLY C 513 REMARK 465 THR C 775 REMARK 465 ASP C 776 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 613 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 20 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 GLU C 688 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 226 CG PRO A 255 2.02 REMARK 500 O ASN C 613 N GLN C 617 2.06 REMARK 500 O TYR C 638 N ALA C 643 2.06 REMARK 500 CB SER A 343 CD1 ILE A 383 2.07 REMARK 500 OG1 THR A 83 OH TYR B 95 2.08 REMARK 500 OG1 THR A 83 CZ TYR B 95 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 63 86.32 -67.94 REMARK 500 GLU A 87 42.56 -106.14 REMARK 500 LYS A 137 1.64 58.84 REMARK 500 ILE A 161 -59.09 -122.57 REMARK 500 LYS A 195 99.62 -66.96 REMARK 500 GLU A 211 -66.93 -123.17 REMARK 500 ILE A 229 -63.80 -105.07 REMARK 500 LEU A 256 32.61 -86.92 REMARK 500 ASN A 505 68.77 -112.01 REMARK 500 ASP A 586 18.25 55.91 REMARK 500 ILE C 538 4.03 -175.92 REMARK 500 SER C 541 -55.25 59.60 REMARK 500 PRO C 584 14.08 -69.08 REMARK 500 THR C 642 -66.37 -132.30 REMARK 500 LEU C 667 -77.18 -106.51 REMARK 500 ASN C 703 -6.09 -55.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6WC4 RELATED DB: PDB REMARK 900 6WC4 CONTAINS A PRIOR MODEL OF THE STRUCTURE, SUPERCEDED BY THIS ONE DBREF 8FTU A 1 672 UNP Q6CWC7 Q6CWC7_KLULA 1 672 DBREF 8FTU B 4 113 UNP Q6CL08 Q6CL08_KLULA 1 110 DBREF 8FTU C 422 456 UNP Q6CUS2 Q6CUS2_KLULA 332 366 DBREF 8FTU C 514 776 UNP Q6CUS2 Q6CUS2_KLULA 424 686 SEQADV 8FTU MET A -26 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU LYS A -25 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU HIS A -24 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU HIS A -23 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU HIS A -22 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU HIS A -21 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU HIS A -20 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU HIS A -19 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU HIS A -18 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU GLY A -17 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU ALA A -16 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU ALA A -15 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU GLY A -14 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU THR A -13 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU SER A -12 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU LEU A -11 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU TYR A -10 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU LYS A -9 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU LYS A -8 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU ALA A -7 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU GLY A -6 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU LEU A -5 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU VAL A -4 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU PRO A -3 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU ARG A -2 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU GLY A -1 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU SER A 0 UNP Q6CWC7 EXPRESSION TAG SEQADV 8FTU MET B 1 UNP Q6CL08 EXPRESSION TAG SEQADV 8FTU GLY B 2 UNP Q6CL08 EXPRESSION TAG SEQADV 8FTU SER B 3 UNP Q6CL08 EXPRESSION TAG SEQADV 8FTU MET C 419 UNP Q6CUS2 EXPRESSION TAG SEQADV 8FTU GLY C 420 UNP Q6CUS2 EXPRESSION TAG SEQADV 8FTU SER C 421 UNP Q6CUS2 EXPRESSION TAG SEQADV 8FTU GLY C 509 UNP Q6CUS2 LINKER SEQADV 8FTU ASP C 510 UNP Q6CUS2 LINKER SEQADV 8FTU GLY C 511 UNP Q6CUS2 LINKER SEQADV 8FTU ASP C 512 UNP Q6CUS2 LINKER SEQADV 8FTU GLY C 513 UNP Q6CUS2 LINKER SEQRES 1 A 699 MET LYS HIS HIS HIS HIS HIS HIS HIS GLY ALA ALA GLY SEQRES 2 A 699 THR SER LEU TYR LYS LYS ALA GLY LEU VAL PRO ARG GLY SEQRES 3 A 699 SER MET ASN PRO GLN LEU TYR LEU CYS ALA SER VAL PHE SEQRES 4 A 699 ILE THR ARG GLY ASP VAL LYS SER VAL SER GLU ILE TYR SEQRES 5 A 699 GLN GLY LEU GLN SER ASP ALA GLU ARG LEU GLN TYR LEU SEQRES 6 A 699 LYS LEU LEU CYS VAL MET TRP PRO GLU LEU ASP ALA PRO SEQRES 7 A 699 THR ASN ILE SER PHE VAL LEU LYS ASP ILE GLU LEU ASN SEQRES 8 A 699 GLY MET ASP GLU SER SER VAL LEU VAL SER LEU ILE GLN SEQRES 9 A 699 GLU ASP SER SER LEU THR ALA ILE SER GLU MET ASP VAL SEQRES 10 A 699 ASN THR ILE SER LYS ARG VAL ASN ALA LEU ALA SER TYR SEQRES 11 A 699 VAL GLU GLU THR LEU ILE GLY PHE ASN ILE HIS ILE ARG SEQRES 12 A 699 GLU THR HIS MET LEU GLU ASP PHE ILE ARG ALA ARG THR SEQRES 13 A 699 LEU VAL VAL ASN SER LEU SER LYS ASP ALA LEU CYS SER SEQRES 14 A 699 LEU GLU LEU LEU ALA ASN SER THR SER LYS SER LEU VAL SEQRES 15 A 699 SER TRP LEU ASP GLY ILE LEU LYS PRO LEU ASP HIS LEU SEQRES 16 A 699 ASN ARG ARG LEU ASP THR LYS LEU SER ILE PHE GLN PHE SEQRES 17 A 699 GLU ASN LEU SER ALA GLN ASP ALA VAL SER GLU MET TRP SEQRES 18 A 699 LYS LEU PRO VAL LYS GLU VAL SER VAL VAL ARG SER MET SEQRES 19 A 699 MET LYS TYR GLU VAL GLU PRO TYR LEU LYS PHE GLN GLY SEQRES 20 A 699 SER TYR THR PRO PHE TYR GLU VAL ILE PHE ASN PRO ASP SEQRES 21 A 699 ASN PHE PRO LEU ASP SER ILE ASN ASN PHE GLN ILE TYR SEQRES 22 A 699 LYS TYR LEU SER SER GLN PRO THR PRO LEU ASP THR LYS SEQRES 23 A 699 PHE ASN GLU THR LYS TRP ASN ILE LEU TYR SER ASN GLY SEQRES 24 A 699 LYS ASN LEU ALA SER ILE PRO LEU PRO ASN LEU VAL PHE SEQRES 25 A 699 GLU LEU GLU SER LEU ILE LYS SER PHE GLY ASP ASP SER SEQRES 26 A 699 GLN ILE PHE SER GLY ILE SER LEU ASN GLU TRP LEU VAL SEQRES 27 A 699 ASN LEU LYS PHE MET ASN ALA MET ASP ILE LYS ASP LEU SEQRES 28 A 699 LYS SER LEU LYS LYS LEU GLN ASN GLU ASP SER VAL VAL SEQRES 29 A 699 GLN THR SER TYR PHE SER ILE ILE THR GLN ASN MET PHE SEQRES 30 A 699 GLN GLY HIS ILE ASP ILE LYS THR VAL GLN ASN VAL VAL SEQRES 31 A 699 GLU PHE ILE GLU SER SER THR LEU PHE ASP LYS LEU THR SEQRES 32 A 699 ASN GLU LEU GLN THR SER ILE LEU LEU GLU SER LEU LEU SEQRES 33 A 699 LYS LEU GLY LYS PHE ASP ILE LEU GLU GLN PHE VAL SER SEQRES 34 A 699 THR SER GLY VAL LYS ILE GLN ASP LYS VAL ILE ILE GLN SEQRES 35 A 699 HIS PHE TRP ARG PHE PHE ASN ILE ALA SER ASN GLY SER SEQRES 36 A 699 LEU SER ASP PRO ASP MET LYS ASN ALA ASN ARG THR LEU SEQRES 37 A 699 ASN LEU LEU SER ASN LYS GLU THR HIS SER ASN LEU TYR SEQRES 38 A 699 ASP ILE LEU THR ILE VAL ASP ARG LEU SER HIS TYR SER SEQRES 39 A 699 LEU SER PHE LYS ARG GLY MET PRO PHE LYS PRO ALA HIS SEQRES 40 A 699 ILE SER GLU PHE LYS ALA ASN PRO MET GLU ILE VAL GLU SEQRES 41 A 699 LYS LEU LEU ASP LEU ASN PRO LYS LEU ARG LYS ASN ILE SEQRES 42 A 699 GLU VAL THR PHE ASP ILE LEU LYS GLU LEU TYR THR ALA SEQRES 43 A 699 LEU GLN VAL THR PRO SER ASP LYS ASP PHE THR LYS GLU SEQRES 44 A 699 TYR SER LYS LEU LEU SER GLU HIS ILE ASN ASN LEU LEU SEQRES 45 A 699 ALA ASN GLY ASP PHE LYS PHE ALA PHE ASP GLN ALA ILE SEQRES 46 A 699 ASN LEU ILE GLU ARG PRO ASP ALA ALA GLU HIS TRP VAL SEQRES 47 A 699 THR ILE PHE GLN VAL GLY LYS TYR ILE ASP PRO ASN TRP SEQRES 48 A 699 LEU ASP ALA GLU ILE PRO THR GLU ILE ILE TYR LEU GLN SEQRES 49 A 699 LEU GLY ILE VAL SER LYS LEU LEU HIS ILE CYS PRO GLU SEQRES 50 A 699 LYS GLU TYR GLU VAL ILE THR SER GLN TRP SER GLY LEU SEQRES 51 A 699 GLU LEU GLU LEU SER THR ARG ASN LEU ILE SER ASP LYS SEQRES 52 A 699 TYR SER LEU GLU ASN THR GLN ARG SER ASN ASP ASN PHE SEQRES 53 A 699 MET SER ASP VAL SER THR ASN VAL GLY ASN PHE LEU SER SEQRES 54 A 699 GLY LYS PHE GLN TRP ASN ILE GLY GLY ALA SEQRES 1 B 113 MET GLY SER MET THR THR ASP LEU ASP THR LEU SER ASP SEQRES 2 B 113 GLN LEU ARG LYS ASN TYR TYR ARG ASP LEU SER LEU PHE SEQRES 3 B 113 GLN ASP ASP GLU ASP PRO PHE TYR HIS TYR LEU ILE SER SEQRES 4 B 113 THR LYS LEU ALA THR ASN LEU ASN THR VAL ARG LYS LEU SEQRES 5 B 113 ALA ILE LYS ASP ASN LEU ASP ASP PRO SER SER ASP ALA SEQRES 6 B 113 ILE ASP ARG TYR GLN LYS ASN PHE SER ARG LEU GLU GLU SEQRES 7 B 113 SER VAL SER SER ILE SER PHE SER LYS ALA SER LYS LEU SEQRES 8 B 113 GLN GLN LYS TYR ASP ALA TYR GLN GLU SER GLN LYS LYS SEQRES 9 B 113 ARG ARG TYR SER VAL ASP PHE ASP ALA SEQRES 1 C 306 MET GLY SER GLU ASN ILE TYR THR THR LEU LYS PHE GLU SEQRES 2 C 306 SER MET MET GLN GLN ARG VAL ILE GLN ILE ARG SER ILE SEQRES 3 C 306 PRO GLU GLU GLU TYR HIS GLU LEU VAL SER VAL GLN GLY SEQRES 4 C 306 ASP GLY ASP GLY PRO ILE GLN VAL SER VAL PHE VAL GLN SEQRES 5 C 306 SER ALA ALA LYS VAL PHE THR GLU PHE GLU GLN GLY CYS SEQRES 6 C 306 ASP THR ILE GLY ARG SER LYS VAL GLU SER ILE TYR LEU SEQRES 7 C 306 TYR LYS PHE ASN LEU LEU GLN THR ALA PHE PHE ALA MET SEQRES 8 C 306 VAL SER GLU LYS VAL ASN ASP TRP THR GLN LEU TYR LYS SEQRES 9 C 306 ASP VAL ARG TYR LEU TYR THR GLU ASN PRO LYS LEU LEU SEQRES 10 C 306 GLN LEU MET GLU LEU ASN SER ARG ARG LEU ASP LEU ASN SEQRES 11 C 306 LEU ASN LEU ILE LYS LYS THR ILE TYR LYS LEU VAL ASN SEQRES 12 C 306 ASP GLN LEU GLN GLU LEU LYS ASP ASN GLU ARG THR PRO SEQRES 13 C 306 ASP TRP ASP ILE THR ILE SER SER LEU LEU PRO TYR LEU SEQRES 14 C 306 LYS LYS THR ALA LEU PRO THR LEU TYR LYS LEU GLU ASP SEQRES 15 C 306 ASN THR ILE LEU VAL ALA LEU ILE ARG TYR ILE VAL HIS SEQRES 16 C 306 ASP LEU VAL ILE ASP ASN ILE LEU HIS TRP ARG VAL ILE SEQRES 17 C 306 SER GLU LYS SER SER GLU ASN LEU SER GLU PHE ILE MET SEQRES 18 C 306 LEU LEU LEU SER GLY LEU GLU ILE PRO ARG LEU ASN LEU SEQRES 19 C 306 ILE GLU THR TYR ARG HIS SER ARG GLU LYS LEU GLY ILE SEQRES 20 C 306 LEU SER LYS ILE LEU THR ALA HIS LEU LYS ASP ILE LEU SEQRES 21 C 306 GLU MET PHE TYR GLU GLY GLU PHE PHE LEU PHE GLU THR SEQRES 22 C 306 ASP GLU ILE VAL GLN TRP ILE ILE LEU LEU PHE ALA ASP SEQRES 23 C 306 THR PRO THR ARG ARG ASP CYS ILE ASP GLU ILE ARG ARG SEQRES 24 C 306 VAL ARG GLU GLU ALA THR ASP HELIX 1 AA1 ASN A 2 ARG A 15 1 14 HELIX 2 AA2 ASP A 17 GLY A 27 1 11 HELIX 3 AA3 SER A 30 TRP A 45 1 16 HELIX 4 AA4 ALA A 50 LYS A 59 5 10 HELIX 5 AA5 ASP A 67 ASP A 79 1 13 HELIX 6 AA6 LEU A 82 GLU A 87 1 6 HELIX 7 AA7 ASP A 89 PHE A 111 1 23 HELIX 8 AA8 ARG A 116 THR A 118 5 3 HELIX 9 AA9 HIS A 119 LYS A 137 1 19 HELIX 10 AB1 SER A 142 ASN A 148 1 7 HELIX 11 AB2 SER A 151 ILE A 161 1 11 HELIX 12 AB3 ILE A 161 ASP A 173 1 13 HELIX 13 AB4 SER A 177 ASN A 183 1 7 HELIX 14 AB5 SER A 185 LYS A 195 1 11 HELIX 15 AB6 GLU A 200 GLU A 211 1 12 HELIX 16 AB7 GLU A 211 GLY A 220 1 10 HELIX 17 AB8 TYR A 222 ILE A 229 1 8 HELIX 18 AB9 SER A 239 SER A 250 1 12 HELIX 19 AC1 ASP A 257 GLY A 272 1 16 HELIX 20 AC2 LYS A 273 SER A 277 5 5 HELIX 21 AC3 ASN A 282 SER A 293 1 12 HELIX 22 AC4 ASP A 297 SER A 302 5 6 HELIX 23 AC5 SER A 305 LYS A 314 1 10 HELIX 24 AC6 PHE A 315 ASP A 320 1 6 HELIX 25 AC7 ASP A 323 GLN A 331 1 9 HELIX 26 AC8 ASP A 334 PHE A 350 1 17 HELIX 27 AC9 ASP A 355 ILE A 366 1 12 HELIX 28 AD1 ASN A 377 LEU A 391 1 15 HELIX 29 AD2 LYS A 393 GLY A 405 1 13 HELIX 30 AD3 GLN A 409 ALA A 424 1 16 HELIX 31 AD4 ASP A 431 LEU A 443 1 13 HELIX 32 AD5 LYS A 447 THR A 449 5 3 HELIX 33 AD6 HIS A 450 HIS A 465 1 16 HELIX 34 AD7 LYS A 477 ASN A 487 5 11 HELIX 35 AD8 PRO A 488 ASN A 499 1 12 HELIX 36 AD9 PRO A 500 ARG A 503 5 4 HELIX 37 AE1 ASN A 505 GLN A 521 1 17 HELIX 38 AE2 PHE A 529 ASN A 547 1 19 HELIX 39 AE3 ASP A 549 GLU A 562 1 14 HELIX 40 AE4 ASP A 565 GLU A 568 5 4 HELIX 41 AE5 HIS A 569 LYS A 578 1 10 HELIX 42 AE6 TRP A 584 GLU A 588 5 5 HELIX 43 AE7 PRO A 590 LEU A 605 1 16 HELIX 44 AE8 PRO A 609 LYS A 611 5 3 HELIX 45 AE9 GLU A 612 ARG A 630 1 19 HELIX 46 AF1 THR B 10 LEU B 25 1 16 HELIX 47 AF2 PRO B 32 ASP B 60 1 29 HELIX 48 AF3 ASP B 64 LYS B 103 1 40 HELIX 49 AF4 TYR C 425 SER C 443 1 19 HELIX 50 AF5 PRO C 445 TYR C 449 5 5 HELIX 51 AF6 VAL C 519 ASP C 536 1 18 HELIX 52 AF7 ILE C 546 VAL C 566 1 21 HELIX 53 AF8 ASP C 568 ASN C 583 1 16 HELIX 54 AF9 LEU C 586 ASN C 622 1 37 HELIX 55 AG1 TRP C 628 SER C 633 1 6 HELIX 56 AG2 SER C 634 THR C 642 1 9 HELIX 57 AG3 THR C 642 LEU C 650 1 9 HELIX 58 AG4 ASP C 652 LEU C 667 1 16 HELIX 59 AG5 LEU C 667 TRP C 675 1 9 HELIX 60 AG6 SER C 679 LEU C 697 1 19 HELIX 61 AG7 ILE C 699 ASN C 703 5 5 HELIX 62 AG8 ILE C 705 THR C 723 1 19 HELIX 63 AG9 HIS C 725 GLU C 735 1 11 HELIX 64 AH1 GLU C 742 PHE C 754 1 13 HELIX 65 AH2 THR C 757 ALA C 774 1 18 SHEET 1 AA1 2 SER A 469 LYS A 471 0 SHEET 2 AA1 2 MET A 474 PRO A 475 -1 O MET A 474 N LYS A 471 SHEET 1 AA2 2 LEU C 452 SER C 454 0 SHEET 2 AA2 2 GLN C 516 SER C 518 -1 O VAL C 517 N VAL C 453 CISPEP 1 THR A 254 PRO A 255 0 -27.45 CRYST1 240.790 87.846 161.431 90.00 107.61 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004153 0.000000 0.001318 0.00000 SCALE2 0.000000 0.011384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006499 0.00000