HEADER TRANSFERASE 18-JAN-23 8FUX TITLE KPSC D160C TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSULE POLYSACCHARIDE EXPORT PROTEIN KPSC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: KPSC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLYCOSYLTRANSFERASE, RETAINING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.KIMBER,L.DOYLE,C.WHITFIELD REVDAT 4 22-MAY-24 8FUX 1 REMARK REVDAT 3 03-MAY-23 8FUX 1 JRNL REVDAT 2 05-APR-23 8FUX 1 JRNL REVDAT 1 08-MAR-23 8FUX 0 JRNL AUTH L.DOYLE,O.G.OVCHINNIKOVA,B.S.HUANG,T.J.B.FORRESTER, JRNL AUTH 2 T.L.LOWARY,M.S.KIMBER,C.WHITFIELD JRNL TITL MECHANISM AND LINKAGE SPECIFICITIES OF THE DUAL RETAINING JRNL TITL 2 BETA-KDO GLYCOSYLTRANSFERASE MODULES OF KPSC FROM BACTERIAL JRNL TITL 3 CAPSULE BIOSYNTHESIS. JRNL REF J.BIOL.CHEM. V. 299 04609 2023 JRNL REFN ESSN 1083-351X JRNL PMID 36924942 JRNL DOI 10.1016/J.JBC.2023.104609 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 184570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4300 - 3.7300 0.99 5945 313 0.1271 0.1340 REMARK 3 2 3.7300 - 2.9600 0.99 5861 309 0.1202 0.1345 REMARK 3 3 2.9600 - 2.5900 1.00 5895 310 0.1252 0.1506 REMARK 3 4 2.5900 - 2.3500 0.99 5809 306 0.1125 0.1495 REMARK 3 5 2.3500 - 2.1800 0.99 5858 308 0.1067 0.1363 REMARK 3 6 2.1800 - 2.0500 0.99 5809 306 0.1036 0.1408 REMARK 3 7 2.0500 - 1.9500 0.99 5804 305 0.1035 0.1439 REMARK 3 8 1.9500 - 1.8600 1.00 5872 310 0.0992 0.1383 REMARK 3 9 1.8600 - 1.7900 1.00 5864 308 0.0980 0.1478 REMARK 3 10 1.7900 - 1.7300 1.00 5811 306 0.0968 0.1441 REMARK 3 11 1.7300 - 1.6800 1.00 5833 307 0.0958 0.1388 REMARK 3 12 1.6800 - 1.6300 1.00 5878 309 0.0952 0.1393 REMARK 3 13 1.6300 - 1.5900 1.00 5867 309 0.0982 0.1584 REMARK 3 14 1.5900 - 1.5500 1.00 5824 307 0.1147 0.1769 REMARK 3 15 1.5500 - 1.5100 1.00 5858 308 0.1225 0.1689 REMARK 3 16 1.5100 - 1.4800 1.00 5862 309 0.1180 0.1776 REMARK 3 17 1.4800 - 1.4500 1.00 5857 308 0.1193 0.1576 REMARK 3 18 1.4500 - 1.4200 1.00 5808 306 0.1271 0.1884 REMARK 3 19 1.4200 - 1.4000 1.00 5853 308 0.1287 0.1828 REMARK 3 20 1.4000 - 1.3700 1.00 5826 306 0.1403 0.1938 REMARK 3 21 1.3700 - 1.3500 1.00 5876 309 0.1525 0.2157 REMARK 3 22 1.3500 - 1.3300 1.00 5782 305 0.1713 0.2159 REMARK 3 23 1.3300 - 1.3100 1.00 5885 310 0.1906 0.2181 REMARK 3 24 1.3100 - 1.2900 1.00 5791 304 0.2105 0.2664 REMARK 3 25 1.2900 - 1.2800 1.00 5835 307 0.2228 0.2613 REMARK 3 26 1.2800 - 1.2600 1.00 5885 310 0.2383 0.2980 REMARK 3 27 1.2600 - 1.2400 1.00 5801 306 0.2216 0.2562 REMARK 3 28 1.2400 - 1.2300 1.00 5840 307 0.2291 0.2895 REMARK 3 29 1.2300 - 1.2100 1.00 5811 306 0.2376 0.2705 REMARK 3 30 1.2100 - 1.2000 1.00 5841 307 0.2391 0.2766 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.134 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.512 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 5861 REMARK 3 ANGLE : 1.585 8106 REMARK 3 CHIRALITY : 0.120 906 REMARK 3 PLANARITY : 0.015 1047 REMARK 3 DIHEDRAL : 15.302 2239 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FUX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000271480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 184570 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % (V/V) PEG 3350 AND 0.1 M BIS REMARK 280 -TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.15000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLU A 146 REMARK 465 ARG A 147 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 MET B 0 REMARK 465 PRO B 195 REMARK 465 ASP B 196 REMARK 465 VAL B 197 REMARK 465 LEU B 198 REMARK 465 GLU B 199 REMARK 465 GLY B 200 REMARK 465 LYS B 201 REMARK 465 HIS B 326 REMARK 465 HIS B 327 REMARK 465 HIS B 328 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLN B 240 O1 PO4 B 406 1.38 REMARK 500 HH21 ARG A 210 O HOH A 608 1.57 REMARK 500 O HOH A 614 O HOH A 898 1.74 REMARK 500 SG CYS B 160 C2 KDO B 404 1.77 REMARK 500 SG CYS A 160 C2 KDO A 405 1.83 REMARK 500 O HOH A 753 O HOH A 948 1.88 REMARK 500 OD1 ASN A 37 O HOH A 601 1.96 REMARK 500 O HOH B 775 O HOH B 781 1.97 REMARK 500 O HOH A 723 O HOH A 733 1.99 REMARK 500 OD1 ASP A 208 O HOH A 602 2.00 REMARK 500 O HOH A 936 O HOH A 993 2.01 REMARK 500 O HOH B 516 O HOH B 751 2.04 REMARK 500 OD1 ASN B 37 O HOH B 501 2.04 REMARK 500 O HOH B 559 O HOH B 684 2.04 REMARK 500 O HOH A 829 O HOH A 981 2.04 REMARK 500 O HOH A 619 O HOH A 967 2.05 REMARK 500 O HOH B 674 O HOH B 738 2.05 REMARK 500 O HOH A 676 O HOH A 843 2.06 REMARK 500 O HOH A 701 O HOH A 753 2.10 REMARK 500 O HOH B 584 O HOH B 651 2.10 REMARK 500 O HOH A 610 O HOH A 614 2.11 REMARK 500 O HOH B 648 O HOH B 821 2.12 REMARK 500 OD1 ASN B 37 O HOH B 502 2.12 REMARK 500 OE1 GLN B 315 O HOH B 503 2.12 REMARK 500 O HOH B 632 O HOH B 793 2.13 REMARK 500 OE2 GLU A 286 O HOH A 603 2.13 REMARK 500 O HOH A 765 O HOH A 775 2.15 REMARK 500 NH1 ARG A 11 O HOH A 604 2.15 REMARK 500 O HOH A 1024 O HOH A 1062 2.17 REMARK 500 O HOH A 875 O HOH A 1001 2.17 REMARK 500 O HOH A 732 O HOH A 941 2.17 REMARK 500 OE1 GLN A 315 O HOH A 605 2.18 REMARK 500 OG SER B 277 O HOH B 504 2.18 REMARK 500 O HOH A 1027 O HOH A 1078 2.18 REMARK 500 NE2 GLN A 272 O HOH A 606 2.19 REMARK 500 N GLN B 240 O1 PO4 B 406 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG B 120 O HOH A 603 1454 1.53 REMARK 500 OE2 GLU B 286 O HOH A 930 1454 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 1 N GLY A 1 CA 0.102 REMARK 500 GLU A 16 CD GLU A 16 OE1 0.081 REMARK 500 GLU A 35 CD GLU A 35 OE2 0.099 REMARK 500 CYS A 90 CB CYS A 90 SG -0.122 REMARK 500 SER A 117 CB SER A 117 OG -0.079 REMARK 500 CYS A 254 CB CYS A 254 SG -0.103 REMARK 500 PHE A 311 CE1 PHE A 311 CZ -0.131 REMARK 500 CYS B 90 CB CYS B 90 SG -0.185 REMARK 500 GLU B 121 CG GLU B 121 CD 0.123 REMARK 500 GLU B 121 CD GLU B 121 OE2 0.082 REMARK 500 ARG B 233 CB ARG B 233 CG -0.202 REMARK 500 LYS B 250 CE LYS B 250 NZ -0.158 REMARK 500 CYS B 254 CB CYS B 254 SG -0.239 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 309 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 214 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 279 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 73 -74.24 -73.60 REMARK 500 SER A 132 -164.64 -160.81 REMARK 500 VAL A 237 -74.11 -94.61 REMARK 500 SER A 308 -157.59 -139.84 REMARK 500 HIS A 323 -77.89 -54.24 REMARK 500 CYS B 90 -33.23 -135.53 REMARK 500 SER B 132 -165.60 -161.41 REMARK 500 ASN B 135 37.97 -142.67 REMARK 500 VAL B 237 -74.68 -95.28 REMARK 500 SER B 308 -158.16 -142.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1080 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1081 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1082 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1083 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1085 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A1086 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A1087 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH A1088 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH B 944 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 945 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B 946 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 947 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 948 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B 949 DISTANCE = 6.51 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 KDO A 405 REMARK 610 KDO B 404 DBREF1 8FUX A 2 323 UNP A0A0H2Z2W8_ECOK1 DBREF2 8FUX A A0A0H2Z2W8 2 323 DBREF1 8FUX B 2 323 UNP A0A0H2Z2W8_ECOK1 DBREF2 8FUX B A0A0H2Z2W8 2 323 SEQADV 8FUX MET A 0 UNP A0A0H2Z2W INITIATING METHIONINE SEQADV 8FUX GLY A 1 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 8FUX CYS A 160 UNP A0A0H2Z2W ASP 160 ENGINEERED MUTATION SEQADV 8FUX HIS A 324 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 8FUX HIS A 325 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 8FUX HIS A 326 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 8FUX HIS A 327 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 8FUX HIS A 328 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 8FUX MET B 0 UNP A0A0H2Z2W INITIATING METHIONINE SEQADV 8FUX GLY B 1 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 8FUX CYS B 160 UNP A0A0H2Z2W ASP 160 ENGINEERED MUTATION SEQADV 8FUX HIS B 324 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 8FUX HIS B 325 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 8FUX HIS B 326 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 8FUX HIS B 327 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 8FUX HIS B 328 UNP A0A0H2Z2W EXPRESSION TAG SEQRES 1 A 329 MET GLY ILE GLY ILE TYR SER PRO GLY ILE TRP ARG ILE SEQRES 2 A 329 PRO HIS LEU GLU LYS PHE LEU ALA GLN PRO CYS GLN LYS SEQRES 3 A 329 LEU SER LEU LEU ARG PRO VAL PRO GLN GLU VAL ASN ALA SEQRES 4 A 329 ILE ALA VAL TRP GLY HIS ARG PRO SER ALA ALA LYS PRO SEQRES 5 A 329 VAL ALA ILE ALA LYS ALA ALA GLY LYS PRO VAL ILE ARG SEQRES 6 A 329 LEU GLU ASP GLY PHE VAL ARG SER LEU ASP LEU GLY VAL SEQRES 7 A 329 ASN GLY GLU PRO PRO LEU SER LEU VAL VAL ASP ASP CYS SEQRES 8 A 329 GLY ILE TYR TYR ASP ALA SER LYS PRO SER ALA LEU GLU SEQRES 9 A 329 LYS LEU VAL GLN ASP LYS ALA GLY ASN THR ALA LEU ILE SEQRES 10 A 329 SER GLN ALA ARG GLU ALA MET HIS THR ILE VAL THR GLY SEQRES 11 A 329 ASP MET SER LYS TYR ASN LEU ALA PRO ALA PHE VAL ALA SEQRES 12 A 329 ASP GLU SER GLU ARG THR ASN ILE VAL LEU VAL VAL ASP SEQRES 13 A 329 GLN THR PHE ASN CYS MET SER VAL THR TYR GLY ASN ALA SEQRES 14 A 329 GLY PRO HIS GLU PHE ALA ALA MET LEU GLU ALA ALA MET SEQRES 15 A 329 ALA GLU ASN PRO GLN ALA GLU ILE TRP VAL LYS VAL HIS SEQRES 16 A 329 PRO ASP VAL LEU GLU GLY LYS LYS THR GLY TYR PHE ALA SEQRES 17 A 329 ASP LEU ARG ALA THR GLN ARG VAL ARG LEU ILE ALA GLU SEQRES 18 A 329 ASN VAL SER PRO GLN SER LEU LEU ARG HIS VAL SER ARG SEQRES 19 A 329 VAL TYR VAL VAL THR SER GLN TYR GLY PHE GLU ALA LEU SEQRES 20 A 329 LEU ALA GLY LYS PRO VAL THR CYS PHE GLY GLN PRO TRP SEQRES 21 A 329 TYR ALA SER TRP GLY LEU THR ASP ASP ARG HIS PRO GLN SEQRES 22 A 329 SER ALA LEU LEU SER ALA ARG ARG GLY SER ALA THR LEU SEQRES 23 A 329 GLU GLU LEU PHE ALA ALA ALA TYR LEU ARG TYR CYS ARG SEQRES 24 A 329 TYR ILE ASP PRO GLN THR GLY GLU VAL SER ASP LEU PHE SEQRES 25 A 329 THR VAL LEU GLN TRP LEU GLN LEU GLN ARG ARG HIS HIS SEQRES 26 A 329 HIS HIS HIS HIS SEQRES 1 B 329 MET GLY ILE GLY ILE TYR SER PRO GLY ILE TRP ARG ILE SEQRES 2 B 329 PRO HIS LEU GLU LYS PHE LEU ALA GLN PRO CYS GLN LYS SEQRES 3 B 329 LEU SER LEU LEU ARG PRO VAL PRO GLN GLU VAL ASN ALA SEQRES 4 B 329 ILE ALA VAL TRP GLY HIS ARG PRO SER ALA ALA LYS PRO SEQRES 5 B 329 VAL ALA ILE ALA LYS ALA ALA GLY LYS PRO VAL ILE ARG SEQRES 6 B 329 LEU GLU ASP GLY PHE VAL ARG SER LEU ASP LEU GLY VAL SEQRES 7 B 329 ASN GLY GLU PRO PRO LEU SER LEU VAL VAL ASP ASP CYS SEQRES 8 B 329 GLY ILE TYR TYR ASP ALA SER LYS PRO SER ALA LEU GLU SEQRES 9 B 329 LYS LEU VAL GLN ASP LYS ALA GLY ASN THR ALA LEU ILE SEQRES 10 B 329 SER GLN ALA ARG GLU ALA MET HIS THR ILE VAL THR GLY SEQRES 11 B 329 ASP MET SER LYS TYR ASN LEU ALA PRO ALA PHE VAL ALA SEQRES 12 B 329 ASP GLU SER GLU ARG THR ASN ILE VAL LEU VAL VAL ASP SEQRES 13 B 329 GLN THR PHE ASN CYS MET SER VAL THR TYR GLY ASN ALA SEQRES 14 B 329 GLY PRO HIS GLU PHE ALA ALA MET LEU GLU ALA ALA MET SEQRES 15 B 329 ALA GLU ASN PRO GLN ALA GLU ILE TRP VAL LYS VAL HIS SEQRES 16 B 329 PRO ASP VAL LEU GLU GLY LYS LYS THR GLY TYR PHE ALA SEQRES 17 B 329 ASP LEU ARG ALA THR GLN ARG VAL ARG LEU ILE ALA GLU SEQRES 18 B 329 ASN VAL SER PRO GLN SER LEU LEU ARG HIS VAL SER ARG SEQRES 19 B 329 VAL TYR VAL VAL THR SER GLN TYR GLY PHE GLU ALA LEU SEQRES 20 B 329 LEU ALA GLY LYS PRO VAL THR CYS PHE GLY GLN PRO TRP SEQRES 21 B 329 TYR ALA SER TRP GLY LEU THR ASP ASP ARG HIS PRO GLN SEQRES 22 B 329 SER ALA LEU LEU SER ALA ARG ARG GLY SER ALA THR LEU SEQRES 23 B 329 GLU GLU LEU PHE ALA ALA ALA TYR LEU ARG TYR CYS ARG SEQRES 24 B 329 TYR ILE ASP PRO GLN THR GLY GLU VAL SER ASP LEU PHE SEQRES 25 B 329 THR VAL LEU GLN TRP LEU GLN LEU GLN ARG ARG HIS HIS SEQRES 26 B 329 HIS HIS HIS HIS HET KD3 A 401 26 HET KD3 A 402 27 HET C5P A 403 33 HET PXV A 404 44 HET KDO A 405 27 HET CL A 406 1 HET KD3 B 401 27 HET KD3 B 402 27 HET PXV B 403 43 HET KDO B 404 27 HET CL B 405 1 HET PO4 B 406 5 HETNAM KD3 3-DEOXY-BETA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE HETNAM PXV N-(8-HYDROXYOCTYL)-4-METHOXYBENZAMIDE HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 3 KD3 4(C8 H14 O8) FORMUL 5 C5P C9 H14 N3 O8 P FORMUL 6 PXV 2(C16 H25 N O3) FORMUL 7 KDO 2(C8 H14 O8) FORMUL 8 CL 2(CL 1-) FORMUL 14 PO4 O4 P 3- FORMUL 15 HOH *937(H2 O) HELIX 1 AA1 SER A 6 ARG A 11 1 6 HELIX 2 AA2 HIS A 14 ALA A 20 1 7 HELIX 3 AA3 ARG A 45 SER A 47 5 3 HELIX 4 AA4 ALA A 48 GLY A 59 1 12 HELIX 5 AA5 LEU A 75 GLY A 79 5 5 HELIX 6 AA6 SER A 100 ASP A 108 1 9 HELIX 7 AA7 ASP A 108 ALA A 114 1 7 HELIX 8 AA8 LEU A 115 GLY A 129 1 15 HELIX 9 AA9 CYS A 160 GLY A 166 1 7 HELIX 10 AB1 GLY A 169 ASN A 184 1 16 HELIX 11 AB2 HIS A 194 GLU A 199 1 6 HELIX 12 AB3 SER A 223 ARG A 229 1 7 HELIX 13 AB4 GLN A 240 ALA A 248 1 9 HELIX 14 AB5 GLN A 272 GLY A 281 1 10 HELIX 15 AB6 THR A 284 LEU A 294 1 11 HELIX 16 AB7 ASP A 309 HIS A 324 1 16 HELIX 17 AB8 SER B 6 ARG B 11 1 6 HELIX 18 AB9 HIS B 14 ALA B 20 1 7 HELIX 19 AC1 ARG B 45 SER B 47 5 3 HELIX 20 AC2 ALA B 48 GLY B 59 1 12 HELIX 21 AC3 LEU B 75 GLY B 79 5 5 HELIX 22 AC4 SER B 100 ASP B 108 1 9 HELIX 23 AC5 LYS B 109 ALA B 114 5 6 HELIX 24 AC6 LEU B 115 GLY B 129 1 15 HELIX 25 AC7 CYS B 160 TYR B 165 1 6 HELIX 26 AC8 GLY B 169 ASN B 184 1 16 HELIX 27 AC9 SER B 223 ARG B 229 1 7 HELIX 28 AD1 GLN B 240 ALA B 248 1 9 HELIX 29 AD2 GLN B 272 GLY B 281 1 10 HELIX 30 AD3 THR B 284 ARG B 295 1 12 HELIX 31 AD4 ASP B 309 HIS B 324 1 16 SHEET 1 AA1 7 CYS A 23 LYS A 25 0 SHEET 2 AA1 7 ILE A 2 ILE A 4 1 N ILE A 4 O GLN A 24 SHEET 3 AA1 7 ALA A 38 TRP A 42 1 O ALA A 38 N GLY A 3 SHEET 4 AA1 7 VAL A 62 ASP A 67 1 O LEU A 65 N VAL A 41 SHEET 5 AA1 7 SER A 84 ASP A 88 -1 O ASP A 88 N ARG A 64 SHEET 6 AA1 7 CYS A 297 ILE A 300 -1 O ARG A 298 N LEU A 85 SHEET 7 AA1 7 VAL A 307 SER A 308 -1 O SER A 308 N TYR A 299 SHEET 1 AA2 6 VAL A 215 ILE A 218 0 SHEET 2 AA2 6 GLU A 188 LYS A 192 1 N VAL A 191 O ARG A 216 SHEET 3 AA2 6 ILE A 150 VAL A 154 1 N VAL A 153 O TRP A 190 SHEET 4 AA2 6 ARG A 233 VAL A 236 1 O TYR A 235 N LEU A 152 SHEET 5 AA2 6 VAL A 252 CYS A 254 1 O THR A 253 N VAL A 234 SHEET 6 AA2 6 ASP A 267 ASP A 268 1 O ASP A 267 N VAL A 252 SHEET 1 AA3 7 CYS B 23 LYS B 25 0 SHEET 2 AA3 7 ILE B 2 ILE B 4 1 N ILE B 4 O GLN B 24 SHEET 3 AA3 7 ALA B 38 TRP B 42 1 O ALA B 38 N GLY B 3 SHEET 4 AA3 7 VAL B 62 ASP B 67 1 O LEU B 65 N VAL B 41 SHEET 5 AA3 7 SER B 84 ASP B 88 -1 O ASP B 88 N ARG B 64 SHEET 6 AA3 7 CYS B 297 ILE B 300 -1 O ARG B 298 N LEU B 85 SHEET 7 AA3 7 VAL B 307 SER B 308 -1 O SER B 308 N TYR B 299 SHEET 1 AA4 6 VAL B 215 ILE B 218 0 SHEET 2 AA4 6 GLU B 188 LYS B 192 1 N VAL B 191 O ILE B 218 SHEET 3 AA4 6 ILE B 150 VAL B 154 1 N VAL B 151 O TRP B 190 SHEET 4 AA4 6 ARG B 233 VAL B 236 1 O TYR B 235 N LEU B 152 SHEET 5 AA4 6 VAL B 252 CYS B 254 1 O THR B 253 N VAL B 236 SHEET 6 AA4 6 ASP B 267 ASP B 268 1 O ASP B 267 N VAL B 252 LINK O7 KD3 A 401 C2 KD3 A 402 1555 1555 1.40 LINK C2 KD3 A 401 O12 PXV A 404 1555 1555 1.38 LINK O7 KD3 B 401 C2 KD3 B 402 1555 1555 1.40 LINK O1 KD3 B 401 C11 PXV B 403 1555 1555 1.39 CRYST1 58.540 80.300 65.980 90.00 103.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017082 0.000000 0.003956 0.00000 SCALE2 0.000000 0.012453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015557 0.00000