HEADER IMMUNE SYSTEM 21-JAN-23 8FWF TITLE CRYSTAL STRUCTURE OF APO FORM FAB235 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB235, LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB235, HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: 293 F CELLS; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: 293 F CELLS KEYWDS HIV, MEMBRANE PROXIMAL EXTERNAL REGION, MPER, VACCINE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.KIM,E.L.REINHERZ REVDAT 2 06-MAR-24 8FWF 1 JRNL REVDAT 1 11-OCT-23 8FWF 0 JRNL AUTH K.TAN,J.CHEN,Y.KAKU,Y.WANG,L.DONIUS,R.A.KHAN,X.LI,H.RICHTER, JRNL AUTH 2 M.S.SEAMAN,T.WALZ,W.HWANG,E.L.REINHERZ,M.KIM JRNL TITL INADEQUATE STRUCTURAL CONSTRAINT ON FAB APPROACH RATHER THAN JRNL TITL 2 PARATOPE ELICITATION LIMITS HIV-1 MPER VACCINE UTILITY. JRNL REF NAT COMMUN V. 14 7218 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37940661 JRNL DOI 10.1038/S41467-023-42097-6 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 45980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5900 - 4.9000 0.91 2778 146 0.1668 0.1930 REMARK 3 2 4.9000 - 3.8900 0.93 2718 148 0.1328 0.1571 REMARK 3 3 3.8900 - 3.4000 0.95 2750 141 0.1540 0.1892 REMARK 3 4 3.4000 - 3.0900 0.97 2759 134 0.1707 0.1946 REMARK 3 5 3.0900 - 2.8600 0.97 2726 165 0.1793 0.2174 REMARK 3 6 2.8600 - 2.7000 0.97 2746 149 0.1831 0.2270 REMARK 3 7 2.7000 - 2.5600 0.97 2734 121 0.1936 0.2466 REMARK 3 8 2.5600 - 2.4500 0.97 2743 142 0.1876 0.2513 REMARK 3 9 2.4500 - 2.3500 0.97 2731 141 0.1805 0.2310 REMARK 3 10 2.3500 - 2.2700 0.97 2738 139 0.1770 0.2117 REMARK 3 11 2.2700 - 2.2000 0.98 2739 142 0.1774 0.2296 REMARK 3 12 2.2000 - 2.1400 0.98 2738 147 0.1827 0.2071 REMARK 3 13 2.1400 - 2.0800 0.98 2701 158 0.1865 0.2460 REMARK 3 14 2.0800 - 2.0300 0.98 2765 138 0.1988 0.2128 REMARK 3 15 2.0300 - 1.9900 0.99 2766 123 0.2045 0.2554 REMARK 3 16 1.9900 - 1.9400 0.92 2576 138 0.2265 0.2667 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.184 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.485 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3656 REMARK 3 ANGLE : 1.042 4976 REMARK 3 CHIRALITY : 0.069 546 REMARK 3 PLANARITY : 0.012 629 REMARK 3 DIHEDRAL : 9.241 523 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6754 35.9944 2.8005 REMARK 3 T TENSOR REMARK 3 T11: 0.2466 T22: 0.1209 REMARK 3 T33: 0.2409 T12: -0.0022 REMARK 3 T13: 0.0191 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.6725 L22: 1.9606 REMARK 3 L33: 2.5129 L12: 0.2065 REMARK 3 L13: 0.5010 L23: -0.4400 REMARK 3 S TENSOR REMARK 3 S11: -0.1015 S12: -0.0568 S13: 0.4759 REMARK 3 S21: 0.1137 S22: -0.0074 S23: -0.0991 REMARK 3 S31: -0.3849 S32: 0.0261 S33: 0.0952 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 82 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9751 27.8964 11.7807 REMARK 3 T TENSOR REMARK 3 T11: 0.2628 T22: 0.1950 REMARK 3 T33: 0.2433 T12: -0.0399 REMARK 3 T13: 0.0061 T23: -0.0475 REMARK 3 L TENSOR REMARK 3 L11: 3.2820 L22: 0.0841 REMARK 3 L33: 1.1316 L12: -0.0110 REMARK 3 L13: 1.7354 L23: 0.1351 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: -0.1632 S13: 0.3200 REMARK 3 S21: 0.1036 S22: 0.0470 S23: -0.0808 REMARK 3 S31: -0.1728 S32: 0.0126 S33: 0.0401 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 135 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5205 21.8893 16.3441 REMARK 3 T TENSOR REMARK 3 T11: 0.2320 T22: 0.3037 REMARK 3 T33: 0.2521 T12: -0.0885 REMARK 3 T13: -0.0014 T23: -0.0860 REMARK 3 L TENSOR REMARK 3 L11: 2.7815 L22: 5.7234 REMARK 3 L33: 1.7024 L12: -1.1485 REMARK 3 L13: 0.4952 L23: 0.3490 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: 0.1657 S13: 0.0410 REMARK 3 S21: -0.2294 S22: 0.1217 S23: -0.4275 REMARK 3 S31: -0.0514 S32: 0.3030 S33: -0.0358 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2489 15.2212 14.7094 REMARK 3 T TENSOR REMARK 3 T11: 0.1990 T22: 0.2115 REMARK 3 T33: 0.1613 T12: -0.0201 REMARK 3 T13: 0.0397 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 2.2580 L22: 3.1376 REMARK 3 L33: 0.8626 L12: -1.4328 REMARK 3 L13: 0.3409 L23: -0.0804 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -0.3107 S13: 0.3536 REMARK 3 S21: 0.3188 S22: 0.0563 S23: -0.3911 REMARK 3 S31: -0.0925 S32: 0.0317 S33: -0.0848 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 45 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8390 15.8569 9.1733 REMARK 3 T TENSOR REMARK 3 T11: 0.1592 T22: 0.1490 REMARK 3 T33: 0.1086 T12: -0.0056 REMARK 3 T13: 0.0510 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 1.7382 L22: 1.9899 REMARK 3 L33: 1.0882 L12: -0.3608 REMARK 3 L13: 0.7495 L23: -0.3141 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: -0.0677 S13: 0.0897 REMARK 3 S21: 0.1135 S22: 0.0088 S23: 0.0605 REMARK 3 S31: -0.0840 S32: -0.1230 S33: -0.0510 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 122 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1559 18.0489 24.8813 REMARK 3 T TENSOR REMARK 3 T11: 0.2606 T22: 0.3380 REMARK 3 T33: 0.2796 T12: -0.0612 REMARK 3 T13: -0.0078 T23: -0.1323 REMARK 3 L TENSOR REMARK 3 L11: 0.9587 L22: 0.9757 REMARK 3 L33: 0.7061 L12: 0.6050 REMARK 3 L13: 0.7967 L23: 0.2934 REMARK 3 S TENSOR REMARK 3 S11: 0.1116 S12: -0.3464 S13: 0.3559 REMARK 3 S21: 0.2489 S22: -0.2874 S23: 0.1835 REMARK 3 S31: 0.1007 S32: -0.1847 S33: 0.1545 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 199 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2328 17.0031 33.9448 REMARK 3 T TENSOR REMARK 3 T11: 0.4699 T22: 0.5367 REMARK 3 T33: 0.3009 T12: -0.1774 REMARK 3 T13: 0.0501 T23: -0.1129 REMARK 3 L TENSOR REMARK 3 L11: 4.3211 L22: 5.0802 REMARK 3 L33: 3.4548 L12: 2.4836 REMARK 3 L13: 2.3686 L23: 2.9053 REMARK 3 S TENSOR REMARK 3 S11: 0.5939 S12: -0.7109 S13: -0.0835 REMARK 3 S21: 0.8943 S22: -0.4504 S23: -0.2366 REMARK 3 S31: 0.3960 S32: -0.2015 S33: -0.0201 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000271522. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46067 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.97300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULPHATE, 0.1M REMARK 280 HEPES:NAOH, 2%(V/V) PEG400, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.37750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.37750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.47000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.37750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.37750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.47000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.37750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.37750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.47000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.37750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.37750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.47000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 519 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP H 227 REMARK 465 LYS H 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 150 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 57 -32.59 66.80 REMARK 500 ALA L 90 171.41 177.56 REMARK 500 PRO H 41 114.37 -39.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG L 60 0.09 SIDE CHAIN REMARK 500 ARG H 13 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG H 305 DBREF 8FWF L 1 220 PDB 8FWF 8FWF 1 220 DBREF 8FWF H 1 228 PDB 8FWF 8FWF 1 228 SEQRES 1 L 220 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 L 220 SER VAL GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 L 220 GLN SER LEU LEU TYR SER SER ASN GLN LYS ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG ASP SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER VAL LYS ALA GLU ASP LEU ALA VAL SEQRES 8 L 220 TYR CYS CYS GLN GLN TYR TYR ASN TYR PRO PHE THR PHE SEQRES 9 L 220 GLY ALA GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 228 GLN VAL GLN LEU GLN GLN SER GLY THR ASP LEU VAL ARG SEQRES 2 H 228 PRO GLY THR SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 228 TYR ALA PHE THR THR TYR PHE ILE GLU TRP VAL LYS GLN SEQRES 4 H 228 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY VAL ILE ASN SEQRES 5 H 228 PRO GLY SER GLY ILE PRO ASN TYR ASN GLU MET PHE LYS SEQRES 6 H 228 GLY LYS ALA THR LEU THR ALA ASP LYS SER SER SER THR SEQRES 7 H 228 ALA TYR LEU HIS LEU SER SER LEU THR SER ASP ASP SER SEQRES 8 H 228 ALA VAL TYR PHE CYS ALA ARG ALA PRO TYR TYR TYR GLY SEQRES 9 H 228 SER SER TYR TYR TYR PHE ASP VAL TRP GLY ALA GLY THR SEQRES 10 H 228 THR VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 228 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 228 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 228 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 228 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 228 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 228 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 228 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL SEQRES 18 H 228 GLU PRO LYS SER CYS ASP LYS HET CL L 301 1 HET PEG L 302 7 HET PEG L 303 7 HET GOL L 304 6 HET SO4 L 305 5 HET SO4 L 306 5 HET SO4 L 307 5 HET SO4 L 308 5 HET SO4 L 309 5 HET CL H 301 2 HET CL H 302 1 HET CL H 303 1 HET PEG H 304 7 HET PEG H 305 6 HET EDO H 306 4 HET EDO H 307 4 HET EDO H 308 4 HET ACT H 309 4 HET ACT H 310 4 HET GOL H 311 6 HET GOL H 312 6 HET SO4 H 313 5 HET SO4 H 314 5 HET SO4 H 315 5 HET SO4 H 316 5 HET SO4 H 317 5 HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 4(CL 1-) FORMUL 4 PEG 4(C4 H10 O3) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 7 SO4 10(O4 S 2-) FORMUL 17 EDO 3(C2 H6 O2) FORMUL 20 ACT 2(C2 H3 O2 1-) FORMUL 29 HOH *241(H2 O) HELIX 1 AA1 LYS L 85 LEU L 89 5 5 HELIX 2 AA2 SER L 127 SER L 133 1 7 HELIX 3 AA3 LYS L 189 LYS L 194 1 6 HELIX 4 AA4 ALA H 28 TYR H 32 5 5 HELIX 5 AA5 THR H 87 SER H 91 5 5 HELIX 6 AA6 SER H 137 GLY H 143 5 7 HELIX 7 AA7 SER H 166 ALA H 168 5 3 HELIX 8 AA8 SER H 197 LEU H 199 5 3 HELIX 9 AA9 LYS H 211 ASN H 214 5 4 SHEET 1 AA1 4 MET L 4 SER L 7 0 SHEET 2 AA1 4 VAL L 19 SER L 25 -1 O LYS L 24 N SER L 5 SHEET 3 AA1 4 ASP L 76 ILE L 81 -1 O PHE L 77 N CYS L 23 SHEET 4 AA1 4 PHE L 68 SER L 73 -1 N THR L 69 O THR L 80 SHEET 1 AA2 6 SER L 10 SER L 14 0 SHEET 2 AA2 6 THR L 108 LYS L 113 1 O GLU L 111 N LEU L 11 SHEET 3 AA2 6 ALA L 90 GLN L 96 -1 N TYR L 92 O THR L 108 SHEET 4 AA2 6 LEU L 39 GLN L 44 -1 N TYR L 42 O CYS L 93 SHEET 5 AA2 6 LYS L 51 TYR L 55 -1 O LYS L 51 N GLN L 43 SHEET 6 AA2 6 THR L 59 ARG L 60 -1 O THR L 59 N TYR L 55 SHEET 1 AA3 4 SER L 10 SER L 14 0 SHEET 2 AA3 4 THR L 108 LYS L 113 1 O GLU L 111 N LEU L 11 SHEET 3 AA3 4 ALA L 90 GLN L 96 -1 N TYR L 92 O THR L 108 SHEET 4 AA3 4 THR L 103 PHE L 104 -1 O THR L 103 N GLN L 96 SHEET 1 AA4 2 LEU L 30 TYR L 31 0 SHEET 2 AA4 2 LYS L 36 ASN L 37 -1 O LYS L 36 N TYR L 31 SHEET 1 AA5 4 SER L 120 PHE L 124 0 SHEET 2 AA5 4 THR L 135 PHE L 145 -1 O ASN L 143 N SER L 120 SHEET 3 AA5 4 TYR L 179 SER L 188 -1 O LEU L 181 N LEU L 142 SHEET 4 AA5 4 SER L 165 VAL L 169 -1 N GLN L 166 O THR L 184 SHEET 1 AA6 4 ALA L 159 LEU L 160 0 SHEET 2 AA6 4 LYS L 151 VAL L 156 -1 N VAL L 156 O ALA L 159 SHEET 3 AA6 4 VAL L 197 THR L 203 -1 O GLU L 201 N GLN L 153 SHEET 4 AA6 4 VAL L 211 ASN L 216 -1 O VAL L 211 N VAL L 202 SHEET 1 AA7 4 GLN H 3 GLN H 6 0 SHEET 2 AA7 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA7 4 THR H 78 LEU H 83 -1 O LEU H 81 N VAL H 20 SHEET 4 AA7 4 ALA H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA8 6 ASP H 10 VAL H 12 0 SHEET 2 AA8 6 THR H 117 VAL H 121 1 O THR H 120 N ASP H 10 SHEET 3 AA8 6 ALA H 92 ALA H 99 -1 N ALA H 92 O VAL H 119 SHEET 4 AA8 6 PHE H 33 GLN H 39 -1 N GLU H 35 O ALA H 97 SHEET 5 AA8 6 LEU H 45 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 AA8 6 PRO H 58 TYR H 60 -1 O ASN H 59 N VAL H 50 SHEET 1 AA9 4 ASP H 10 VAL H 12 0 SHEET 2 AA9 4 THR H 117 VAL H 121 1 O THR H 120 N ASP H 10 SHEET 3 AA9 4 ALA H 92 ALA H 99 -1 N ALA H 92 O VAL H 119 SHEET 4 AA9 4 VAL H 112 TRP H 113 -1 O VAL H 112 N ARG H 98 SHEET 1 AB1 4 SER H 130 LEU H 134 0 SHEET 2 AB1 4 THR H 145 TYR H 155 -1 O LYS H 153 N SER H 130 SHEET 3 AB1 4 TYR H 186 PRO H 195 -1 O LEU H 188 N VAL H 152 SHEET 4 AB1 4 VAL H 173 THR H 175 -1 N HIS H 174 O VAL H 191 SHEET 1 AB2 4 SER H 130 LEU H 134 0 SHEET 2 AB2 4 THR H 145 TYR H 155 -1 O LYS H 153 N SER H 130 SHEET 3 AB2 4 TYR H 186 PRO H 195 -1 O LEU H 188 N VAL H 152 SHEET 4 AB2 4 VAL H 179 LEU H 180 -1 N VAL H 179 O SER H 187 SHEET 1 AB3 3 THR H 161 TRP H 164 0 SHEET 2 AB3 3 TYR H 204 HIS H 210 -1 O ASN H 207 N SER H 163 SHEET 3 AB3 3 THR H 215 VAL H 221 -1 O VAL H 217 N VAL H 208 SSBOND 1 CYS L 23 CYS L 94 1555 1555 2.10 SSBOND 2 CYS L 140 CYS L 200 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.10 SSBOND 4 CYS H 150 CYS H 206 1555 1555 2.08 CISPEP 1 SER L 7 PRO L 8 0 -3.38 CISPEP 2 TYR L 100 PRO L 101 0 1.86 CISPEP 3 TYR L 146 PRO L 147 0 5.63 CISPEP 4 PHE H 156 PRO H 157 0 -7.40 CISPEP 5 GLU H 158 PRO H 159 0 -2.59 CRYST1 120.755 120.755 86.940 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008281 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008281 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011502 0.00000