data_8FZA # _entry.id 8FZA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8FZA pdb_00008fza 10.2210/pdb8fza/pdb WWPDB D_1000271611 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'preQ1 riboswitch class I type I' 7rex unspecified PDB 'preQ1 riboswitch class I type I' 8fb3 unspecified PDB 'preQ1 riboswitch class I type II' 6vui unspecified PDB 'preQ1 riboswitch class I type II' 6vuh unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8FZA _pdbx_database_status.recvd_initial_deposition_date 2023-01-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wedekind, J.E.' 1 0000-0002-4269-4229 'Schroeder, G.M.' 2 0000-0001-6354-752X 'Jenkins, J.L.' 3 0000-0003-2548-3275 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 299 _citation.language ? _citation.page_first 105208 _citation.page_last 105208 _citation.title ;Structure and function analysis of a type III preQ 1 -I riboswitch from Escherichia coli reveals direct metabolite sensing by the Shine-Dalgarno sequence. ; _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jbc.2023.105208 _citation.pdbx_database_id_PubMed 37660906 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schroeder, G.M.' 1 ? primary 'Kiliushik, D.' 2 ? primary 'Jenkins, J.L.' 3 ? primary 'Wedekind, J.E.' 4 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 96.930 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8FZA _cell.details ? _cell.formula_units_Z ? _cell.length_a 46.739 _cell.length_a_esd ? _cell.length_b 32.272 _cell.length_b_esd ? _cell.length_c 51.206 _cell.length_c_esd ? _cell.volume 76672.863 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8FZA _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall 'P 2y' _symmetry.space_group_name_H-M 'P 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'PreQ1 Riboswitch (30-MER)' 9533.719 2 ? ? ? ? 2 non-polymer syn 7-DEAZA-7-AMINOMETHYL-GUANINE 179.179 2 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 4 ? ? ? ? 4 water nat water 18.015 31 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUGGGUUCCCUCACCCCAAUCAUAAAAAGG _entity_poly.pdbx_seq_one_letter_code_can UUGGGUUCCCUCACCCCAAUCAUAAAAAGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 G n 1 5 G n 1 6 U n 1 7 U n 1 8 C n 1 9 C n 1 10 C n 1 11 U n 1 12 C n 1 13 A n 1 14 C n 1 15 C n 1 16 C n 1 17 C n 1 18 A n 1 19 A n 1 20 U n 1 21 C n 1 22 A n 1 23 U n 1 24 A n 1 25 A n 1 26 A n 1 27 A n 1 28 A n 1 29 G n 1 30 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 30 _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code DADKPC010000024.1 _struct_ref.pdbx_db_accession DADKPC010000024.1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code UUGGGUUCCCUCACCCCAAUGGUUAAUCAAAAAGG _struct_ref.pdbx_align_begin 47026 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8FZA A 1 ? 30 ? DADKPC010000024.1 47026 ? 47060 ? 1 30 2 1 8FZA B 1 ? 30 ? DADKPC010000024.1 47026 ? 47060 ? 1 30 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8FZA C A 21 ? GB DADKPC010000024.1 G 47046 conflict 21 1 1 8FZA ? A ? ? GB DADKPC010000024.1 G 47047 deletion ? 2 1 8FZA ? A ? ? GB DADKPC010000024.1 U 47048 deletion ? 3 1 8FZA ? A ? ? GB DADKPC010000024.1 U 47049 deletion ? 4 1 8FZA ? A ? ? GB DADKPC010000024.1 A 47050 deletion ? 5 1 8FZA ? A ? ? GB DADKPC010000024.1 C 47053 deletion ? 6 2 8FZA C B 21 ? GB DADKPC010000024.1 G 47046 conflict 21 7 2 8FZA ? B ? ? GB DADKPC010000024.1 G 47047 deletion ? 8 2 8FZA ? B ? ? GB DADKPC010000024.1 U 47048 deletion ? 9 2 8FZA ? B ? ? GB DADKPC010000024.1 U 47049 deletion ? 10 2 8FZA ? B ? ? GB DADKPC010000024.1 A 47050 deletion ? 11 2 8FZA ? B ? ? GB DADKPC010000024.1 C 47053 deletion ? 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PRF non-polymer . 7-DEAZA-7-AMINOMETHYL-GUANINE ? 'C7 H9 N5 O' 179.179 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8FZA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.82 _exptl_crystal.description 'flat parallel piped' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '31% MPD, 0.05 M Na-cacodylate pH 6.0, 0.012 spermine-HCl, 0.1 M KCl and 0.002 M MgCl2, 0.005 M MnCl2-tetrahydrate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details 'Flat Si Rh coated M0, Kirkpatrick-Baez flat bent Si M1 & M2' _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-03-04 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Liquid nitrogen-cooled double crystal Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.8500 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.8500 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.B_iso_Wilson_estimate 52.92 _reflns.entry_id 8FZA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.30 _reflns.d_resolution_low 36.53 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12805 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.percent_possible_obs 98.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 22.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.94 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.024 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1388 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 16.3 _reflns_shell.pdbx_chi_squared 0.74 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.271 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.917 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 97.9 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 58.31 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8FZA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.30 _refine.ls_d_res_low 36.53 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12805 _refine.ls_number_reflns_R_free 1282 _refine.ls_number_reflns_R_work 11523 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.10 _refine.ls_percent_reflns_R_free 10.01 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2099 _refine.ls_R_factor_R_free 0.2522 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2053 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.9496 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3486 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 36.53 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 1228 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1167 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0016 ? 1329 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.4647 ? 2062 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0227 ? 275 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0026 ? 59 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 13.5876 ? 676 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.30 2.39 . . 140 1248 96.66 . . . . 0.3816 . . . . . . . . . . . 0.4027 'X-RAY DIFFRACTION' 2.39 2.50 . . 149 1325 97.55 . . . . 0.3236 . . . . . . . . . . . 0.4077 'X-RAY DIFFRACTION' 2.50 2.63 . . 139 1244 95.71 . . . . 0.3041 . . . . . . . . . . . 0.3669 'X-RAY DIFFRACTION' 2.63 2.80 . . 141 1285 98.01 . . . . 0.3039 . . . . . . . . . . . 0.3324 'X-RAY DIFFRACTION' 2.80 3.02 . . 144 1290 96.70 . . . . 0.2922 . . . . . . . . . . . 0.3525 'X-RAY DIFFRACTION' 3.02 3.32 . . 142 1281 97.07 . . . . 0.2026 . . . . . . . . . . . 0.2383 'X-RAY DIFFRACTION' 3.32 3.80 . . 141 1262 95.57 . . . . 0.1740 . . . . . . . . . . . 0.2632 'X-RAY DIFFRACTION' 3.80 4.78 . . 140 1295 98.76 . . . . 0.1672 . . . . . . . . . . . 0.2119 'X-RAY DIFFRACTION' 4.79 36.53 . . 146 1293 97.96 . . . . 0.1619 . . . . . . . . . . . 0.1745 # _struct.entry_id 8FZA _struct.title 'Class I type III preQ1 riboswitch from E. coli' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8FZA _struct_keywords.text 'riboswitch, prequeuosine1, preQ1, pseudoknot, A-amino kissing, bound state, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 4 N7 ? ? ? 1_555 E MN . MN ? ? A G 4 A MN 103 1_555 ? ? ? ? ? ? ? 2.520 ? ? metalc2 metalc ? ? A C 9 OP1 ? ? ? 1_555 G MN . MN ? ? A C 9 B MN 102 1_455 ? ? ? ? ? ? ? 2.098 ? ? metalc3 metalc ? ? A A 19 OP2 ? ? ? 1_555 H MN . MN ? ? A A 19 B MN 103 1_545 ? ? ? ? ? ? ? 2.113 ? ? metalc4 metalc ? ? A G 30 N7 ? ? ? 1_555 D MN . MN ? ? A G 30 A MN 102 1_555 ? ? ? ? ? ? ? 2.316 ? ? metalc5 metalc ? ? D MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 203 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc6 metalc ? ? D MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 102 A HOH 212 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc7 metalc ? ? D MN . MN ? ? ? 1_655 B C 9 OP1 ? ? A MN 102 B C 9 1_555 ? ? ? ? ? ? ? 2.136 ? ? metalc8 metalc ? ? D MN . MN ? ? ? 1_555 J HOH . O ? ? A MN 102 B HOH 205 1_455 ? ? ? ? ? ? ? 2.121 ? ? metalc9 metalc ? ? D MN . MN ? ? ? 1_555 J HOH . O ? ? A MN 102 B HOH 207 1_455 ? ? ? ? ? ? ? 2.159 ? ? metalc10 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 206 1_555 ? ? ? ? ? ? ? 2.237 ? ? metalc11 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 210 1_555 ? ? ? ? ? ? ? 2.159 ? ? metalc12 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 211 1_555 ? ? ? ? ? ? ? 2.132 ? ? metalc13 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 216 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc14 metalc ? ? E MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 103 A HOH 217 1_555 ? ? ? ? ? ? ? 2.237 ? ? metalc15 metalc ? ? I HOH . O ? ? ? 1_565 H MN . MN ? ? A HOH 204 B MN 103 1_555 ? ? ? ? ? ? ? 2.171 ? ? metalc16 metalc ? ? I HOH . O ? ? ? 1_565 H MN . MN ? ? A HOH 205 B MN 103 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc17 metalc ? ? I HOH . O ? ? ? 1_565 H MN . MN ? ? A HOH 207 B MN 103 1_555 ? ? ? ? ? ? ? 2.200 ? ? metalc18 metalc ? ? I HOH . O ? ? ? 1_655 G MN . MN ? ? A HOH 215 B MN 102 1_555 ? ? ? ? ? ? ? 2.129 ? ? metalc19 metalc ? ? B A 18 OP2 ? ? ? 1_555 H MN . MN ? ? B A 18 B MN 103 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc20 metalc ? ? B G 30 N7 ? ? ? 1_555 G MN . MN ? ? B G 30 B MN 102 1_555 ? ? ? ? ? ? ? 2.535 ? ? metalc21 metalc ? ? G MN . MN ? ? ? 1_555 J HOH . O ? ? B MN 102 B HOH 202 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc22 metalc ? ? G MN . MN ? ? ? 1_555 J HOH . O ? ? B MN 102 B HOH 206 1_555 ? ? ? ? ? ? ? 2.241 ? ? metalc23 metalc ? ? G MN . MN ? ? ? 1_555 J HOH . O ? ? B MN 102 B HOH 209 1_555 ? ? ? ? ? ? ? 2.186 ? ? metalc24 metalc ? ? H MN . MN ? ? ? 1_555 J HOH . O ? ? B MN 103 B HOH 203 1_555 ? ? ? ? ? ? ? 2.189 ? ? hydrog1 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 2 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 2 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 2 O2 ? ? ? 1_555 A U 20 N3 ? ? A U 2 A U 20 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog4 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 12 N4 ? ? A G 3 A C 12 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog5 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 3 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 3 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 3 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 4 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 4 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 4 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 15 N3 ? ? A G 5 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 15 O2 ? ? A G 5 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 5 A C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A A 25 N1 ? ? A G 5 A A 25 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog15 hydrog ? ? A G 5 N3 ? ? ? 1_555 A A 25 N6 ? ? A G 5 A A 25 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog16 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 26 N7 ? ? A U 6 A A 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog17 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 6 A A 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog18 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 27 N7 ? ? A U 7 A A 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog19 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 27 N6 ? ? A U 7 A A 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 A C 10 N4 ? ? A C 8 A C 10 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog21 hydrog ? ? A C 8 N3 ? ? ? 1_555 A A 28 N6 ? ? A C 8 A A 28 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog22 hydrog ? ? A C 8 N4 ? ? ? 1_555 A A 28 N7 ? ? A C 8 A A 28 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog23 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 9 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 9 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 9 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 10 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 10 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 10 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 11 O2 ? ? ? 1_555 A A 13 N6 ? ? A U 11 A A 13 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog30 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 28 N1 ? ? A U 11 A A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 28 N6 ? ? A U 11 A A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 O2 ? ? ? 1_555 A A 26 N6 ? ? A C 15 A A 26 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog33 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 24 N6 ? ? A C 16 A A 24 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog34 hydrog ? ? A C 17 O2 ? ? ? 1_555 A A 22 N6 ? ? A C 17 A A 22 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog35 hydrog ? ? B U 2 N3 ? ? ? 1_555 B A 18 N1 ? ? B U 2 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B U 2 O4 ? ? ? 1_555 B A 18 N6 ? ? B U 2 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B U 2 O2 ? ? ? 1_555 B A 19 N6 ? ? B U 2 B A 19 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog38 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 17 N3 ? ? B G 3 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 17 O2 ? ? B G 3 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 17 N4 ? ? B G 3 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 16 N3 ? ? B G 4 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 16 O2 ? ? B G 4 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 4 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 15 N3 ? ? B G 5 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 15 O2 ? ? B G 5 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 15 N4 ? ? B G 5 B C 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 5 N2 ? ? ? 1_555 B A 25 N1 ? ? B G 5 B A 25 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog48 hydrog ? ? B G 5 N3 ? ? ? 1_555 B A 25 N6 ? ? B G 5 B A 25 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog49 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 26 N7 ? ? B U 6 B A 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog50 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 26 N6 ? ? B U 6 B A 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog51 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 27 N7 ? ? B U 7 B A 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog52 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 27 N6 ? ? B U 7 B A 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog53 hydrog ? ? B C 8 O2 ? ? ? 1_555 B C 10 N4 ? ? B C 8 B C 10 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog54 hydrog ? ? B C 8 N3 ? ? ? 1_555 B A 28 N6 ? ? B C 8 B A 28 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog55 hydrog ? ? B C 8 N4 ? ? ? 1_555 B A 28 N7 ? ? B C 8 B A 28 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog56 hydrog ? ? B C 9 N3 ? ? ? 1_555 B G 30 N1 ? ? B C 9 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B C 9 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 9 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B C 9 O2 ? ? ? 1_555 B G 30 N2 ? ? B C 9 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 10 N3 ? ? ? 1_555 B G 29 N1 ? ? B C 10 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 10 N4 ? ? ? 1_555 B G 29 O6 ? ? B C 10 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 29 N2 ? ? B C 10 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B U 11 N3 ? ? ? 1_555 B A 28 N1 ? ? B U 11 B A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B U 11 O4 ? ? ? 1_555 B A 28 N6 ? ? B U 11 B A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B A 13 N6 ? ? ? 1_555 B G 29 N3 ? ? B A 13 B G 29 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog65 hydrog ? ? B C 15 O2 ? ? ? 1_555 B A 26 N6 ? ? B C 15 B A 26 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog66 hydrog ? ? B C 16 O2 ? ? ? 1_555 B A 24 N6 ? ? B C 16 B A 24 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 8FZA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.021395 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002600 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030987 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019673 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MN ? ? 20.23591 4.67902 ? ? 2.76514 44.01191 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 C 9 9 9 C C A . n A 1 10 C 10 10 10 C C A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 A 13 13 13 A A A . n A 1 14 C 14 14 14 C C A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 A 18 18 18 A A A . n A 1 19 A 19 19 19 A A A . n A 1 20 U 20 20 20 U U A . n A 1 21 C 21 21 21 C C A . n A 1 22 A 22 22 22 A A A . n A 1 23 U 23 23 23 U U A . n A 1 24 A 24 24 24 A A A . n A 1 25 A 25 25 25 A A A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 G 29 29 29 G G A . n A 1 30 G 30 30 30 G G A . n B 1 1 U 1 1 1 U U B . n B 1 2 U 2 2 2 U U B . n B 1 3 G 3 3 3 G G B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 U 6 6 6 U U B . n B 1 7 U 7 7 7 U U B . n B 1 8 C 8 8 8 C C B . n B 1 9 C 9 9 9 C C B . n B 1 10 C 10 10 10 C C B . n B 1 11 U 11 11 11 U U B . n B 1 12 C 12 12 12 C C B . n B 1 13 A 13 13 13 A A B . n B 1 14 C 14 14 14 C C B . n B 1 15 C 15 15 15 C C B . n B 1 16 C 16 16 16 C C B . n B 1 17 C 17 17 17 C C B . n B 1 18 A 18 18 18 A A B . n B 1 19 A 19 19 19 A A B . n B 1 20 U 20 20 20 U U B . n B 1 21 C 21 21 ? ? ? B . n B 1 22 A 22 22 ? ? ? B . n B 1 23 U 23 23 23 U U B . n B 1 24 A 24 24 24 A A B . n B 1 25 A 25 25 25 A A B . n B 1 26 A 26 26 26 A A B . n B 1 27 A 27 27 27 A A B . n B 1 28 A 28 28 28 A A B . n B 1 29 G 29 29 29 G G B . n B 1 30 G 30 30 30 G G B . n # _pdbx_contact_author.id 4 _pdbx_contact_author.email Joseph.wedekind@rochester.edu _pdbx_contact_author.name_first Joseph _pdbx_contact_author.name_last Wedekind _pdbx_contact_author.name_mi E _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4269-4229 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PRF 1 101 101 PRF PRF A . D 3 MN 1 102 1 MN MN A . E 3 MN 1 103 3 MN MN A . F 2 PRF 1 101 101 PRF PRF B . G 3 MN 1 102 2 MN MN B . H 3 MN 1 103 4 MN MN B . I 4 HOH 1 201 16 HOH HOH A . I 4 HOH 2 202 22 HOH HOH A . I 4 HOH 3 203 27 HOH HOH A . I 4 HOH 4 204 26 HOH HOH A . I 4 HOH 5 205 24 HOH HOH A . I 4 HOH 6 206 5 HOH HOH A . I 4 HOH 7 207 23 HOH HOH A . I 4 HOH 8 208 6 HOH HOH A . I 4 HOH 9 209 9 HOH HOH A . I 4 HOH 10 210 15 HOH HOH A . I 4 HOH 11 211 14 HOH HOH A . I 4 HOH 12 212 4 HOH HOH A . I 4 HOH 13 213 20 HOH HOH A . I 4 HOH 14 214 7 HOH HOH A . I 4 HOH 15 215 3 HOH HOH A . I 4 HOH 16 216 12 HOH HOH A . I 4 HOH 17 217 13 HOH HOH A . I 4 HOH 18 218 17 HOH HOH A . I 4 HOH 19 219 21 HOH HOH A . J 4 HOH 1 201 1 HOH HOH B . J 4 HOH 2 202 18 HOH HOH B . J 4 HOH 3 203 25 HOH HOH B . J 4 HOH 4 204 30 HOH HOH B . J 4 HOH 5 205 29 HOH HOH B . J 4 HOH 6 206 2 HOH HOH B . J 4 HOH 7 207 28 HOH HOH B . J 4 HOH 8 208 10 HOH HOH B . J 4 HOH 9 209 19 HOH HOH B . J 4 HOH 10 210 32 HOH HOH B . J 4 HOH 11 211 35 HOH HOH B . J 4 HOH 12 212 33 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,I 2 1 B,F,G,H,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A G 4 ? A G 4 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 206 ? 1_555 96.5 ? 2 N7 ? A G 4 ? A G 4 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 210 ? 1_555 82.8 ? 3 O ? I HOH . ? A HOH 206 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 210 ? 1_555 96.1 ? 4 N7 ? A G 4 ? A G 4 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 79.6 ? 5 O ? I HOH . ? A HOH 206 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 175.4 ? 6 O ? I HOH . ? A HOH 210 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 81.1 ? 7 N7 ? A G 4 ? A G 4 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 97.2 ? 8 O ? I HOH . ? A HOH 206 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 111.9 ? 9 O ? I HOH . ? A HOH 210 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 151.7 ? 10 O ? I HOH . ? A HOH 211 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 216 ? 1_555 71.2 ? 11 N7 ? A G 4 ? A G 4 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 217 ? 1_555 163.4 ? 12 O ? I HOH . ? A HOH 206 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 217 ? 1_555 79.5 ? 13 O ? I HOH . ? A HOH 210 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 217 ? 1_555 81.6 ? 14 O ? I HOH . ? A HOH 211 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 217 ? 1_555 103.5 ? 15 O ? I HOH . ? A HOH 216 ? 1_555 MN ? E MN . ? A MN 103 ? 1_555 O ? I HOH . ? A HOH 217 ? 1_555 99.2 ? 16 OP1 ? A C 9 ? A C 9 ? 1_555 MN ? G MN . ? B MN 102 ? 1_455 O ? I HOH . ? A HOH 215 ? 1_655 50.1 ? 17 OP1 ? A C 9 ? A C 9 ? 1_555 MN ? G MN . ? B MN 102 ? 1_455 N7 ? B G 30 ? B G 30 ? 1_555 45.7 ? 18 O ? I HOH . ? A HOH 215 ? 1_655 MN ? G MN . ? B MN 102 ? 1_455 N7 ? B G 30 ? B G 30 ? 1_555 4.4 ? 19 OP1 ? A C 9 ? A C 9 ? 1_555 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 202 ? 1_555 47.6 ? 20 O ? I HOH . ? A HOH 215 ? 1_655 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 202 ? 1_555 3.6 ? 21 N7 ? B G 30 ? B G 30 ? 1_555 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 202 ? 1_555 2.7 ? 22 OP1 ? A C 9 ? A C 9 ? 1_555 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 206 ? 1_555 49.5 ? 23 O ? I HOH . ? A HOH 215 ? 1_655 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 206 ? 1_555 0.6 ? 24 N7 ? B G 30 ? B G 30 ? 1_555 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 206 ? 1_555 3.8 ? 25 O ? J HOH . ? B HOH 202 ? 1_555 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 206 ? 1_555 3.0 ? 26 OP1 ? A C 9 ? A C 9 ? 1_555 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 209 ? 1_555 48.1 ? 27 O ? I HOH . ? A HOH 215 ? 1_655 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 209 ? 1_555 3.4 ? 28 N7 ? B G 30 ? B G 30 ? 1_555 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 209 ? 1_555 4.0 ? 29 O ? J HOH . ? B HOH 202 ? 1_555 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 209 ? 1_555 5.2 ? 30 O ? J HOH . ? B HOH 206 ? 1_555 MN ? G MN . ? B MN 102 ? 1_455 O ? J HOH . ? B HOH 209 ? 1_555 3.3 ? 31 OP2 ? A A 19 ? A A 19 ? 1_555 MN ? H MN . ? B MN 103 ? 1_545 O ? I HOH . ? A HOH 204 ? 1_565 111.3 ? 32 OP2 ? A A 19 ? A A 19 ? 1_555 MN ? H MN . ? B MN 103 ? 1_545 O ? I HOH . ? A HOH 205 ? 1_565 112.2 ? 33 O ? I HOH . ? A HOH 204 ? 1_565 MN ? H MN . ? B MN 103 ? 1_545 O ? I HOH . ? A HOH 205 ? 1_565 4.3 ? 34 OP2 ? A A 19 ? A A 19 ? 1_555 MN ? H MN . ? B MN 103 ? 1_545 O ? I HOH . ? A HOH 207 ? 1_565 111.4 ? 35 O ? I HOH . ? A HOH 204 ? 1_565 MN ? H MN . ? B MN 103 ? 1_545 O ? I HOH . ? A HOH 207 ? 1_565 7.1 ? 36 O ? I HOH . ? A HOH 205 ? 1_565 MN ? H MN . ? B MN 103 ? 1_545 O ? I HOH . ? A HOH 207 ? 1_565 3.0 ? 37 OP2 ? A A 19 ? A A 19 ? 1_555 MN ? H MN . ? B MN 103 ? 1_545 OP2 ? B A 18 ? B A 18 ? 1_555 114.5 ? 38 O ? I HOH . ? A HOH 204 ? 1_565 MN ? H MN . ? B MN 103 ? 1_545 OP2 ? B A 18 ? B A 18 ? 1_555 4.2 ? 39 O ? I HOH . ? A HOH 205 ? 1_565 MN ? H MN . ? B MN 103 ? 1_545 OP2 ? B A 18 ? B A 18 ? 1_555 2.7 ? 40 O ? I HOH . ? A HOH 207 ? 1_565 MN ? H MN . ? B MN 103 ? 1_545 OP2 ? B A 18 ? B A 18 ? 1_555 5.3 ? 41 OP2 ? A A 19 ? A A 19 ? 1_555 MN ? H MN . ? B MN 103 ? 1_545 O ? J HOH . ? B HOH 203 ? 1_555 110.3 ? 42 O ? I HOH . ? A HOH 204 ? 1_565 MN ? H MN . ? B MN 103 ? 1_545 O ? J HOH . ? B HOH 203 ? 1_555 2.1 ? 43 O ? I HOH . ? A HOH 205 ? 1_565 MN ? H MN . ? B MN 103 ? 1_545 O ? J HOH . ? B HOH 203 ? 1_555 3.1 ? 44 O ? I HOH . ? A HOH 207 ? 1_565 MN ? H MN . ? B MN 103 ? 1_545 O ? J HOH . ? B HOH 203 ? 1_555 5.4 ? 45 OP2 ? B A 18 ? B A 18 ? 1_555 MN ? H MN . ? B MN 103 ? 1_545 O ? J HOH . ? B HOH 203 ? 1_555 4.3 ? 46 N7 ? A G 30 ? A G 30 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 203 ? 1_555 95.2 ? 47 N7 ? A G 30 ? A G 30 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 84.4 ? 48 O ? I HOH . ? A HOH 203 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 O ? I HOH . ? A HOH 212 ? 1_555 88.5 ? 49 N7 ? A G 30 ? A G 30 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 OP1 ? B C 9 ? B C 9 ? 1_555 84.7 ? 50 O ? I HOH . ? A HOH 203 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 OP1 ? B C 9 ? B C 9 ? 1_555 14.7 ? 51 O ? I HOH . ? A HOH 212 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 OP1 ? B C 9 ? B C 9 ? 1_555 97.6 ? 52 N7 ? A G 30 ? A G 30 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 O ? J HOH . ? B HOH 205 ? 1_455 89.8 ? 53 O ? I HOH . ? A HOH 203 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 O ? J HOH . ? B HOH 205 ? 1_455 89.9 ? 54 O ? I HOH . ? A HOH 212 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 O ? J HOH . ? B HOH 205 ? 1_455 173.7 ? 55 OP1 ? B C 9 ? B C 9 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 O ? J HOH . ? B HOH 205 ? 1_455 79.6 ? 56 N7 ? A G 30 ? A G 30 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_455 173.4 ? 57 O ? I HOH . ? A HOH 203 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_455 86.3 ? 58 O ? I HOH . ? A HOH 212 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_455 102.1 ? 59 OP1 ? B C 9 ? B C 9 ? 1_555 MN ? D MN . ? A MN 102 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_455 95.6 ? 60 O ? J HOH . ? B HOH 205 ? 1_455 MN ? D MN . ? A MN 102 ? 1_555 O ? J HOH . ? B HOH 207 ? 1_455 83.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-08-30 2 'Structure model' 1 1 2023-09-13 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.page_last' 3 2 'Structure model' '_citation.pdbx_database_id_DOI' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_citation_author.identifier_ORCID' 7 3 'Structure model' '_citation.journal_volume' 8 3 'Structure model' '_citation.title' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -18.3188074062 -17.2637616495 9.77833349837 0.589882731621 ? 0.0714768178866 ? -0.0837196175959 ? 0.409682439937 ? -0.0102276966858 ? 0.628265247549 ? 7.80644135403 ? 0.423706453008 ? 0.257803961116 ? 6.7042774107 ? 1.38194642997 ? 3.77646740755 ? 0.221372901966 ? 0.533662507406 ? 0.487366090834 ? -0.574040179679 ? -0.436682074942 ? 0.918014173773 ? 0.0917714595129 ? -0.638308512949 ? 0.03469249585 ? 2 'X-RAY DIFFRACTION' ? refined -26.6944717087 -5.59563583587 16.4164166227 0.5978090122 ? 0.195068337535 ? -0.0268438506829 ? 0.55501421722 ? -0.0157096273668 ? 0.384490800051 ? 8.01494424502 ? -2.25721613153 ? 1.0794954395 ? 4.67433097641 ? -1.97459956609 ? 2.38747414816 ? -0.917976307963 ? -1.59577536159 ? 0.245461546154 ? 1.33168955783 ? 0.888047545468 ? 0.0522617478839 ? -0.110542624387 ? -1.01576565007 ? -0.0889110917571 ? 3 'X-RAY DIFFRACTION' ? refined -27.9189667836 -8.04060955659 7.79171829419 0.412715842025 ? 0.0905710152398 ? -0.0179356509507 ? 0.479681407709 ? 0.11251848539 ? 0.453929699998 ? 2.90023295766 ? 1.30326722087 ? 2.44557012695 ? 6.87676482952 ? -2.26953402341 ? 6.32684342117 ? -0.763252969753 ? -1.22191235234 ? -1.14712980233 ? 0.734677741176 ? 0.490602251125 ? -0.264877792528 ? 1.02411011911 ? 0.476035689829 ? 0.289437396114 ? 4 'X-RAY DIFFRACTION' ? refined -17.7584451093 -4.90522042325 6.24107078163 0.568799059771 ? 0.027971305151 ? 0.0566462728476 ? 0.506115991142 ? 0.0303416279157 ? 0.691623639512 ? 1.8470266447 ? -0.610125810903 ? 0.967281076754 ? 2.51732725008 ? -2.6070596579 ? 2.653673481 ? 0.170367910833 ? -0.725902608231 ? -0.323533106141 ? -0.866267877924 ? 1.47993676722 ? -0.0608091440878 ? 0.244252910915 ? -0.324651452643 ? -1.67292187481 ? 5 'X-RAY DIFFRACTION' ? refined -12.1367143257 -15.9780769812 15.6611124082 0.625320629404 ? 0.17842870634 ? -0.00336981958418 ? 0.490094044844 ? -0.0343289779484 ? 0.612594431037 ? 7.40158611109 ? 0.0489212536976 ? 0.584826542209 ? 2.44630694371 ? 4.66825621851 ? 9.08654810311 ? -0.477940702503 ? -0.73488421291 ? -0.235913168962 ? 1.3573443521 ? -0.0559351202324 ? 0.883207565677 ? 0.851591185048 ? -0.0738703854973 ? 0.554540502905 ? 6 'X-RAY DIFFRACTION' ? refined -17.9838937028 -14.9477054027 22.7440900849 1.04458114143 ? 0.452683301741 ? 0.171069771224 ? 1.21090819586 ? 0.172385895446 ? 0.951857874948 ? 3.38406673738 ? -1.44199490295 ? -0.316727235836 ? 3.28462279917 ? 4.14992878407 ? 6.11443938657 ? -1.37334964792 ? -1.07260852536 ? -0.103497952395 ? 2.32464969806 ? 0.83795121108 ? 1.54864441475 ? 1.3801182565 ? -0.233666183541 ? 0.467622804833 ? 7 'X-RAY DIFFRACTION' ? refined -24.2782351204 0.807205780104 11.4468096035 0.565124345605 ? 0.123925375659 ? -0.0171074282463 ? 0.422555602192 ? -0.126400501345 ? 0.410575769075 ? 4.39628180037 ? 0.914908946549 ? -1.80537088769 ? 4.29570752874 ? -3.80438961691 ? 6.63706510147 ? -0.103787992727 ? -0.544361242371 ? 1.04980871478 ? 0.988288648218 ? 0.388958867576 ? -0.16432061243 ? -1.03386582804 ? 0.356402734591 ? -0.338210584938 ? 8 'X-RAY DIFFRACTION' ? refined -0.39665535731 9.22792661905 7.8556990833 0.539802627426 ? 0.153627484986 ? 0.0534763822693 ? 0.438558036006 ? -0.0554176372657 ? 0.697700445725 ? 6.4156860085 ? -1.37713089062 ? 1.01050424117 ? 2.08206122028 ? -0.270062713143 ? 2.04568121306 ? 0.434886325688 ? 0.761163227906 ? -0.350853733308 ? -0.23192925267 ? -0.410948266778 ? 0.396388740383 ? 0.18965967436 ? -0.129244525511 ? 0.0152574960071 ? 9 'X-RAY DIFFRACTION' ? refined 8.31417729055 1.30026286211 8.6195018232 0.469305105326 ? 0.139759808173 ? 0.00588008317417 ? 0.523244540919 ? 0.0534867844747 ? 0.516624360126 ? 3.87622839915 ? -0.519043330015 ? 3.21999680547 ? 6.34442481791 ? 2.7271724018 ? 4.36084160955 ? 0.0770533672565 ? 1.26462721676 ? 0.930331465429 ? -0.216690314014 ? -0.439823565315 ? 1.20667794174 ? -0.601474102518 ? 0.312414076547 ? 0.478265588801 ? 10 'X-RAY DIFFRACTION' ? refined -3.07019334896 0.457976191294 14.6840600113 0.586483135586 ? 0.311513457869 ? 0.103480217352 ? 0.593427836914 ? 0.366032668578 ? 0.963324658261 ? 0.831406629869 ? -0.200510445851 ? 0.755777072694 ? 3.05100865166 ? 1.52233274238 ? 3.14637337937 ? -0.107212114814 ? -0.690147322878 ? -0.13434475407 ? 1.17408767626 ? 0.237130320776 ? 1.02713317542 ? 0.201706869821 ? -0.61356872258 ? -0.172121101025 ? 11 'X-RAY DIFFRACTION' ? refined -4.97611709735 15.4365777061 12.4561177239 0.463458790327 ? 0.155216016581 ? -0.0107280259656 ? 0.552227839101 ? -0.0461147576278 ? 0.592030851923 ? 6.38280821459 ? 2.30519139092 ? -0.911078666849 ? 5.2396139487 ? 2.27355915847 ? 7.92189097585 ? 0.0598652226526 ? 0.116450820114 ? 0.98411151056 ? 0.514155453605 ? -0.600037108628 ? -0.160663249222 ? 0.476742437111 ? 1.0958607077 ? 0.125810162895 ? 12 'X-RAY DIFFRACTION' ? refined 3.82966431984 16.6829651405 11.283741885 0.728806197086 ? 0.248843198651 ? 0.0868238236669 ? 0.66082690357 ? -0.00961296431587 ? 1.03358628686 ? 5.18358739782 ? 0.0685606207148 ? -0.287386490459 ? 5.94878786133 ? -0.370853050577 ? 3.73080631624 ? -0.876616952101 ? 0.452250483508 ? -0.850942731298 ? 0.769556778251 ? 0.503929852331 ? -0.373116555046 ? -0.683303867629 ? 0.689679247709 ? 0.593252608472 ? 13 'X-RAY DIFFRACTION' ? refined 7.12164346007 -0.252814790811 17.9161589942 0.632775361664 ? 0.212195015208 ? 0.0844575736773 ? 0.67452646217 ? -0.019772965151 ? 0.529954673838 ? 6.23364867487 ? 0.665845584651 ? -0.324381221725 ? 1.66146509197 ? -2.02197871863 ? 5.84463696618 ? -0.330830971802 ? -1.34937030838 ? 0.0375484161753 ? 0.893265343214 ? -0.433132057818 ? 0.371508552053 ? -0.155495427068 ? -0.543147517229 ? 0.821537877294 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A 1 ? A ? A 4 ? ? ;chain 'A' and (resid 1 through 4 ) ; 2 'X-RAY DIFFRACTION' 2 A ? A 5 ? A ? A 8 ? ? ;chain 'A' and (resid 5 through 8 ) ; 3 'X-RAY DIFFRACTION' 3 A ? A 9 ? A ? A 12 ? ? ;chain 'A' and (resid 9 through 12 ) ; 4 'X-RAY DIFFRACTION' 4 A ? A 13 ? A ? A 16 ? ? ;chain 'A' and (resid 13 through 16 ) ; 5 'X-RAY DIFFRACTION' 5 A ? A 17 ? A ? A 20 ? ? ;chain 'A' and (resid 17 through 20) ; 6 'X-RAY DIFFRACTION' 6 A ? A 21 ? A ? A 24 ? ? ;chain 'A' and (resid 21 through 24 ) ; 7 'X-RAY DIFFRACTION' 7 A ? A 25 ? A ? A 30 ? ? ;chain 'A' and (resid 25 through 30 ) ; 8 'X-RAY DIFFRACTION' 8 G ? B 2 ? G ? B 7 ? ? ;chain 'B' and (resid 2 through 7) ; 9 'X-RAY DIFFRACTION' 9 G ? B 8 ? G ? B 11 ? ? ;chain 'B' and (resid 8 through 11) ; 10 'X-RAY DIFFRACTION' 10 G ? B 12 ? G ? B 15 ? ? ;chain 'B' and (resid 12 through 15) ; 11 'X-RAY DIFFRACTION' 11 G ? B 16 ? G ? B 19 ? ? ;chain 'B' and (resid 16 through 19) ; 12 'X-RAY DIFFRACTION' 12 G ? B 20 ? G ? B 26 ? ? ;chain 'B' and (resid 20 through 26) ; 13 'X-RAY DIFFRACTION' 13 G ? B 27 ? G ? B 30 ? ? ;chain 'B' and (resid 27 through 30) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? Blu-Ice ? ? ? 2022 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 'version 10-Jan-2022' 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.7 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? 0.9.8.5 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 6 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 7 # _pdbx_entry_details.entry_id 8FZA _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 1 ? "O5'" ? A U 1 "O5'" 2 1 Y 1 A U 1 ? "C5'" ? A U 1 "C5'" 3 1 Y 1 A U 1 ? "C4'" ? A U 1 "C4'" 4 1 Y 1 A U 1 ? "O4'" ? A U 1 "O4'" 5 1 Y 1 A U 1 ? "C3'" ? A U 1 "C3'" 6 1 Y 1 A U 1 ? "C2'" ? A U 1 "C2'" 7 1 Y 1 A U 1 ? "O2'" ? A U 1 "O2'" 8 1 Y 1 A U 1 ? "C1'" ? A U 1 "C1'" 9 1 Y 1 A U 1 ? N1 ? A U 1 N1 10 1 Y 1 A U 1 ? C2 ? A U 1 C2 11 1 Y 1 A U 1 ? O2 ? A U 1 O2 12 1 Y 1 A U 1 ? N3 ? A U 1 N3 13 1 Y 1 A U 1 ? C4 ? A U 1 C4 14 1 Y 1 A U 1 ? O4 ? A U 1 O4 15 1 Y 1 A U 1 ? C5 ? A U 1 C5 16 1 Y 1 A U 1 ? C6 ? A U 1 C6 17 1 Y 1 B U 1 ? "O5'" ? B U 1 "O5'" 18 1 Y 1 B U 1 ? "C5'" ? B U 1 "C5'" 19 1 Y 1 B U 1 ? "C4'" ? B U 1 "C4'" 20 1 Y 1 B U 1 ? "O4'" ? B U 1 "O4'" 21 1 Y 1 B U 1 ? "C3'" ? B U 1 "C3'" 22 1 Y 1 B U 1 ? "C2'" ? B U 1 "C2'" 23 1 Y 1 B U 1 ? "O2'" ? B U 1 "O2'" 24 1 Y 1 B U 1 ? "C1'" ? B U 1 "C1'" 25 1 Y 1 B U 1 ? N1 ? B U 1 N1 26 1 Y 1 B U 1 ? C2 ? B U 1 C2 27 1 Y 1 B U 1 ? O2 ? B U 1 O2 28 1 Y 1 B U 1 ? N3 ? B U 1 N3 29 1 Y 1 B U 1 ? C4 ? B U 1 C4 30 1 Y 1 B U 1 ? O4 ? B U 1 O4 31 1 Y 1 B U 1 ? C5 ? B U 1 C5 32 1 Y 1 B U 1 ? C6 ? B U 1 C6 33 1 Y 1 B U 23 ? P ? B U 23 P 34 1 Y 1 B U 23 ? OP1 ? B U 23 OP1 35 1 Y 1 B U 23 ? OP2 ? B U 23 OP2 36 1 Y 1 B U 23 ? "O5'" ? B U 23 "O5'" 37 1 Y 1 B U 23 ? "C5'" ? B U 23 "C5'" 38 1 Y 1 B U 23 ? "C4'" ? B U 23 "C4'" 39 1 Y 1 B U 23 ? "O4'" ? B U 23 "O4'" 40 1 Y 1 B U 23 ? "C3'" ? B U 23 "C3'" 41 1 Y 1 B U 23 ? "C2'" ? B U 23 "C2'" 42 1 Y 1 B U 23 ? "O2'" ? B U 23 "O2'" 43 1 Y 1 B U 23 ? "C1'" ? B U 23 "C1'" 44 1 Y 1 B U 23 ? N1 ? B U 23 N1 45 1 Y 1 B U 23 ? C2 ? B U 23 C2 46 1 Y 1 B U 23 ? O2 ? B U 23 O2 47 1 Y 1 B U 23 ? N3 ? B U 23 N3 48 1 Y 1 B U 23 ? C4 ? B U 23 C4 49 1 Y 1 B U 23 ? O4 ? B U 23 O4 50 1 Y 1 B U 23 ? C5 ? B U 23 C5 51 1 Y 1 B U 23 ? C6 ? B U 23 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B C 21 ? B C 21 2 1 Y 1 B A 22 ? B A 22 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MN MN MN N N 114 PRF N1 N N N 115 PRF C2 C N N 116 PRF N3 N N N 117 PRF C4 C Y N 118 PRF C5 C Y N 119 PRF C6 C N N 120 PRF O6 O N N 121 PRF C7 C Y N 122 PRF C10 C N N 123 PRF N11 N N N 124 PRF C8 C Y N 125 PRF N9 N Y N 126 PRF N2 N N N 127 PRF H91 H N N 128 PRF H101 H N N 129 PRF H102 H N N 130 PRF H111 H N N 131 PRF H112 H N N 132 PRF H81 H N N 133 PRF HN91 H N N 134 PRF HN21 H N N 135 PRF HN22 H N N 136 U OP3 O N N 137 U P P N N 138 U OP1 O N N 139 U OP2 O N N 140 U "O5'" O N N 141 U "C5'" C N N 142 U "C4'" C N R 143 U "O4'" O N N 144 U "C3'" C N S 145 U "O3'" O N N 146 U "C2'" C N R 147 U "O2'" O N N 148 U "C1'" C N R 149 U N1 N N N 150 U C2 C N N 151 U O2 O N N 152 U N3 N N N 153 U C4 C N N 154 U O4 O N N 155 U C5 C N N 156 U C6 C N N 157 U HOP3 H N N 158 U HOP2 H N N 159 U "H5'" H N N 160 U "H5''" H N N 161 U "H4'" H N N 162 U "H3'" H N N 163 U "HO3'" H N N 164 U "H2'" H N N 165 U "HO2'" H N N 166 U "H1'" H N N 167 U H3 H N N 168 U H5 H N N 169 U H6 H N N 170 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 PRF N1 C2 sing N N 118 PRF N1 C6 sing N N 119 PRF N1 H91 sing N N 120 PRF C2 N3 doub N N 121 PRF C2 N2 sing N N 122 PRF N3 C4 sing N N 123 PRF C4 C5 doub Y N 124 PRF C4 N9 sing Y N 125 PRF C5 C6 sing N N 126 PRF C5 C7 sing Y N 127 PRF C6 O6 doub N N 128 PRF C7 C10 sing N N 129 PRF C7 C8 doub Y N 130 PRF C10 N11 sing N N 131 PRF C10 H101 sing N N 132 PRF C10 H102 sing N N 133 PRF N11 H111 sing N N 134 PRF N11 H112 sing N N 135 PRF C8 N9 sing Y N 136 PRF C8 H81 sing N N 137 PRF N9 HN91 sing N N 138 PRF N2 HN21 sing N N 139 PRF N2 HN22 sing N N 140 U OP3 P sing N N 141 U OP3 HOP3 sing N N 142 U P OP1 doub N N 143 U P OP2 sing N N 144 U P "O5'" sing N N 145 U OP2 HOP2 sing N N 146 U "O5'" "C5'" sing N N 147 U "C5'" "C4'" sing N N 148 U "C5'" "H5'" sing N N 149 U "C5'" "H5''" sing N N 150 U "C4'" "O4'" sing N N 151 U "C4'" "C3'" sing N N 152 U "C4'" "H4'" sing N N 153 U "O4'" "C1'" sing N N 154 U "C3'" "O3'" sing N N 155 U "C3'" "C2'" sing N N 156 U "C3'" "H3'" sing N N 157 U "O3'" "HO3'" sing N N 158 U "C2'" "O2'" sing N N 159 U "C2'" "C1'" sing N N 160 U "C2'" "H2'" sing N N 161 U "O2'" "HO2'" sing N N 162 U "C1'" N1 sing N N 163 U "C1'" "H1'" sing N N 164 U N1 C2 sing N N 165 U N1 C6 sing N N 166 U C2 O2 doub N N 167 U C2 N3 sing N N 168 U N3 C4 sing N N 169 U N3 H3 sing N N 170 U C4 O4 doub N N 171 U C4 C5 sing N N 172 U C5 C6 doub N N 173 U C5 H5 sing N N 174 U C6 H6 sing N N 175 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8FZA 'double helix' 8FZA 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 2 1_555 A A 18 1_555 -0.262 -0.117 0.307 -7.046 -17.773 -2.620 1 A_U2:A18_A A 2 ? A 18 ? 20 1 1 A G 3 1_555 A C 17 1_555 -0.196 -0.076 -0.105 -11.950 -11.073 -4.100 2 A_G3:C17_A A 3 ? A 17 ? 19 1 1 A G 4 1_555 A C 16 1_555 0.386 -0.251 0.354 -1.230 -6.917 -1.656 3 A_G4:C16_A A 4 ? A 16 ? 19 1 1 A G 5 1_555 A C 15 1_555 -0.380 -0.233 -0.069 -5.555 -13.701 -1.170 4 A_G5:C15_A A 5 ? A 15 ? 19 1 1 A U 6 1_555 A A 26 1_555 -0.418 3.652 0.952 -18.726 -6.752 -66.168 5 A_U6:A26_A A 6 ? A 26 ? 23 3 1 A U 7 1_555 A A 27 1_555 -0.321 3.509 0.652 -1.916 -2.959 -78.823 6 A_U7:A27_A A 7 ? A 27 ? 23 3 1 A U 11 1_555 A A 28 1_555 0.018 -0.041 0.656 -6.349 -22.739 -1.318 7 A_U11:A28_A A 11 ? A 28 ? 20 1 1 A C 10 1_555 A G 29 1_555 0.309 -0.570 0.111 -3.180 -13.335 -2.846 8 A_C10:G29_A A 10 ? A 29 ? 19 1 1 A C 9 1_555 A G 30 1_555 -0.073 -0.251 0.266 -7.048 -13.893 -2.960 9 A_C9:G30_A A 9 ? A 30 ? 19 1 1 B U 2 1_555 B A 18 1_555 -0.417 0.045 -0.300 -17.762 -9.960 -4.860 10 B_U2:A18_B B 2 ? B 18 ? 20 1 1 B G 3 1_555 B C 17 1_555 0.246 -0.153 0.281 -5.541 -13.576 -0.968 11 B_G3:C17_B B 3 ? B 17 ? 19 1 1 B G 4 1_555 B C 16 1_555 0.300 -0.293 0.587 1.818 -15.270 -0.661 12 B_G4:C16_B B 4 ? B 16 ? 19 1 1 B G 5 1_555 B C 15 1_555 -0.465 -0.242 0.145 -8.631 -23.103 -5.857 13 B_G5:C15_B B 5 ? B 15 ? 19 1 1 B U 6 1_555 B A 26 1_555 -0.596 3.381 0.637 -15.673 -5.135 -70.324 14 B_U6:A26_B B 6 ? B 26 ? 23 3 1 B U 7 1_555 B A 27 1_555 -0.837 3.740 0.287 -6.996 -0.352 -76.329 15 B_U7:A27_B B 7 ? B 27 ? 23 3 1 B U 11 1_555 B A 28 1_555 0.183 -0.088 0.772 -10.129 -19.590 -2.013 16 B_U11:A28_B B 11 ? B 28 ? 20 1 1 B C 10 1_555 B G 29 1_555 0.511 -0.435 0.310 1.474 -12.970 -2.562 17 B_C10:G29_B B 10 ? B 29 ? 19 1 1 B C 9 1_555 B G 30 1_555 0.544 -0.121 0.227 -7.145 -9.208 -1.900 18 B_C9:G30_B B 9 ? B 30 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 2 1_555 A A 18 1_555 A G 3 1_555 A C 17 1_555 -0.330 -1.619 3.261 0.076 8.088 34.243 -3.818 0.557 2.817 13.503 -0.126 35.157 1 AA_U2G3:C17A18_AA A 2 ? A 18 ? A 3 ? A 17 ? 1 A G 3 1_555 A C 17 1_555 A G 4 1_555 A C 16 1_555 0.643 -1.456 2.967 -1.714 2.137 29.611 -3.233 -1.572 2.816 4.169 3.344 29.735 2 AA_G3G4:C16C17_AA A 3 ? A 17 ? A 4 ? A 16 ? 1 A G 4 1_555 A C 16 1_555 A G 5 1_555 A C 15 1_555 0.178 -1.893 3.283 3.991 5.347 32.184 -4.227 0.342 2.940 9.518 -7.104 32.850 3 AA_G4G5:C15C16_AA A 4 ? A 16 ? A 5 ? A 15 ? 1 A G 5 1_555 A C 15 1_555 A U 6 1_555 A A 26 1_555 -6.476 -1.256 1.577 14.144 2.784 20.596 -2.770 14.289 -2.451 6.814 -34.612 25.095 4 AA_G5U6:A26C15_AA A 5 ? A 15 ? A 6 ? A 26 ? 1 A U 6 1_555 A A 26 1_555 A U 7 1_555 A A 27 1_555 0.744 -0.733 3.103 2.958 4.820 36.609 -1.765 -0.796 3.034 7.617 -4.675 37.029 5 AA_U6U7:A27A26_AA A 6 ? A 26 ? A 7 ? A 27 ? 1 A U 7 1_555 A A 27 1_555 A U 11 1_555 A A 28 1_555 0.893 3.933 1.939 139.302 105.440 -91.265 -2.111 0.637 -0.770 -53.175 70.252 -176.300 6 AA_U7U11:A28A27_AA A 7 ? A 27 ? A 11 ? A 28 ? 1 A U 11 1_555 A A 28 1_555 A C 10 1_555 A G 29 1_555 -0.992 1.133 -3.181 -1.834 -9.672 -36.226 -2.949 -1.318 -2.841 15.212 -2.884 -37.496 7 AA_U11C10:G29A28_AA A 11 ? A 28 ? A 10 ? A 29 ? 1 A C 10 1_555 A G 29 1_555 A C 9 1_555 A G 30 1_555 0.659 1.348 -3.322 1.263 -4.791 -33.151 -3.119 0.937 -3.125 8.339 2.198 -33.509 8 AA_C10C9:G30G29_AA A 10 ? A 29 ? A 9 ? A 30 ? 1 B U 2 1_555 B A 18 1_555 B G 3 1_555 B C 17 1_555 0.618 -1.148 3.097 -4.752 13.076 32.818 -3.542 -1.615 2.374 21.955 7.979 35.570 9 BB_U2G3:C17A18_BB B 2 ? B 18 ? B 3 ? B 17 ? 1 B G 3 1_555 B C 17 1_555 B G 4 1_555 B C 16 1_555 0.365 -1.687 2.995 0.705 5.183 29.868 -4.139 -0.574 2.678 9.960 -1.354 30.312 10 BB_G3G4:C16C17_BB B 3 ? B 17 ? B 4 ? B 16 ? 1 B G 4 1_555 B C 16 1_555 B G 5 1_555 B C 15 1_555 -0.121 -1.830 3.445 3.329 3.527 31.504 -3.990 0.840 3.198 6.448 -6.087 31.866 11 BB_G4G5:C15C16_BB B 4 ? B 16 ? B 5 ? B 15 ? 1 B G 5 1_555 B C 15 1_555 B U 6 1_555 B A 26 1_555 -6.138 -0.825 1.651 14.924 -4.723 21.998 -1.815 13.037 -1.863 -10.793 -34.103 26.943 12 BB_G5U6:A26C15_BB B 5 ? B 15 ? B 6 ? B 26 ? 1 B U 6 1_555 B A 26 1_555 B U 7 1_555 B A 27 1_555 0.515 -0.681 3.049 9.252 8.442 30.792 -2.510 0.543 2.806 15.136 -16.589 33.184 13 BB_U6U7:A27A26_BB B 6 ? B 26 ? B 7 ? B 27 ? 1 B U 7 1_555 B A 27 1_555 B U 11 1_555 B A 28 1_555 0.702 3.693 2.315 134.228 105.781 -66.192 -2.053 0.609 -1.108 -54.167 68.734 -172.379 14 BB_U7U11:A28A27_BB B 7 ? B 27 ? B 11 ? B 28 ? 1 B U 11 1_555 B A 28 1_555 B C 10 1_555 B G 29 1_555 -1.026 1.417 -3.281 -4.221 -8.433 -37.764 -3.128 -1.041 -3.002 12.786 -6.400 -38.882 15 BB_U11C10:G29A28_BB B 11 ? B 28 ? B 10 ? B 29 ? 1 B C 10 1_555 B G 29 1_555 B C 9 1_555 B G 30 1_555 0.525 1.479 -3.014 2.411 -3.293 -31.281 -3.275 0.560 -2.879 6.075 4.447 -31.539 16 BB_C10C9:G30G29_BB B 10 ? B 29 ? B 9 ? B 30 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM063162 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 PRF ? ? PRF ? ? 'SUBJECT OF INVESTIGATION' ? 2 MN ? ? MN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 7-DEAZA-7-AMINOMETHYL-GUANINE PRF 3 'MANGANESE (II) ION' MN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'isothermal titration calorimetry' 'One equivalent of riboswitch 30-mer binds one equivalent of preQ1 ligand.' 2 1 homology ;Other homologous preQ1 riboswitches of class 1 type I and type II form similar tertiary structures. They do not form higher order assemblies in gel filtration. ; # _space_group.name_H-M_alt 'P 1 2 1' _space_group.name_Hall 'P 2y' _space_group.IT_number 3 _space_group.crystal_system monoclinic _space_group.id 1 #