HEADER RNA 27-JAN-23 8FZA TITLE CLASS I TYPE III PREQ1 RIBOSWITCH FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREQ1 RIBOSWITCH (30-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562 KEYWDS RIBOSWITCH, PREQUEUOSINE1, PREQ1, PSEUDOKNOT, A-AMINO KISSING, BOUND KEYWDS 2 STATE, RNA EXPDTA X-RAY DIFFRACTION AUTHOR J.E.WEDEKIND,G.M.SCHROEDER,J.L.JENKINS REVDAT 3 18-OCT-23 8FZA 1 JRNL REVDAT 2 13-SEP-23 8FZA 1 JRNL REVDAT 1 30-AUG-23 8FZA 0 JRNL AUTH G.M.SCHROEDER,D.KILIUSHIK,J.L.JENKINS,J.E.WEDEKIND JRNL TITL STRUCTURE AND FUNCTION ANALYSIS OF A TYPE III PREQ 1 -I JRNL TITL 2 RIBOSWITCH FROM ESCHERICHIA COLI REVEALS DIRECT METABOLITE JRNL TITL 3 SENSING BY THE SHINE-DALGARNO SEQUENCE. JRNL REF J.BIOL.CHEM. V. 299 05208 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37660906 JRNL DOI 10.1016/J.JBC.2023.105208 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 12805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5300 - 4.7900 0.98 1293 146 0.1619 0.1745 REMARK 3 2 4.7800 - 3.8000 0.99 1295 140 0.1672 0.2119 REMARK 3 3 3.8000 - 3.3200 0.96 1262 141 0.1740 0.2632 REMARK 3 4 3.3200 - 3.0200 0.97 1281 142 0.2026 0.2383 REMARK 3 5 3.0200 - 2.8000 0.97 1290 144 0.2922 0.3525 REMARK 3 6 2.8000 - 2.6300 0.98 1285 141 0.3039 0.3324 REMARK 3 7 2.6300 - 2.5000 0.96 1244 139 0.3041 0.3669 REMARK 3 8 2.5000 - 2.3900 0.98 1325 149 0.3236 0.4077 REMARK 3 9 2.3900 - 2.3000 0.97 1248 140 0.3816 0.4027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.349 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1329 REMARK 3 ANGLE : 0.465 2062 REMARK 3 CHIRALITY : 0.023 275 REMARK 3 PLANARITY : 0.003 59 REMARK 3 DIHEDRAL : 13.588 676 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3188 -17.2638 9.7783 REMARK 3 T TENSOR REMARK 3 T11: 0.5899 T22: 0.4097 REMARK 3 T33: 0.6283 T12: 0.0715 REMARK 3 T13: -0.0837 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 7.8064 L22: 6.7043 REMARK 3 L33: 3.7765 L12: 0.4237 REMARK 3 L13: 0.2578 L23: 1.3819 REMARK 3 S TENSOR REMARK 3 S11: 0.2214 S12: 0.5337 S13: 0.4874 REMARK 3 S21: -0.5740 S22: -0.4367 S23: 0.9180 REMARK 3 S31: 0.0918 S32: -0.6383 S33: 0.0347 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6945 -5.5956 16.4164 REMARK 3 T TENSOR REMARK 3 T11: 0.5978 T22: 0.5550 REMARK 3 T33: 0.3845 T12: 0.1951 REMARK 3 T13: -0.0268 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 8.0149 L22: 4.6743 REMARK 3 L33: 2.3875 L12: -2.2572 REMARK 3 L13: 1.0795 L23: -1.9746 REMARK 3 S TENSOR REMARK 3 S11: -0.9180 S12: -1.5958 S13: 0.2455 REMARK 3 S21: 1.3317 S22: 0.8880 S23: 0.0523 REMARK 3 S31: -0.1105 S32: -1.0158 S33: -0.0889 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9190 -8.0406 7.7917 REMARK 3 T TENSOR REMARK 3 T11: 0.4127 T22: 0.4797 REMARK 3 T33: 0.4539 T12: 0.0906 REMARK 3 T13: -0.0179 T23: 0.1125 REMARK 3 L TENSOR REMARK 3 L11: 2.9002 L22: 6.8768 REMARK 3 L33: 6.3268 L12: 1.3033 REMARK 3 L13: 2.4456 L23: -2.2695 REMARK 3 S TENSOR REMARK 3 S11: -0.7633 S12: -1.2219 S13: -1.1471 REMARK 3 S21: 0.7347 S22: 0.4906 S23: -0.2649 REMARK 3 S31: 1.0241 S32: 0.4760 S33: 0.2894 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7584 -4.9052 6.2411 REMARK 3 T TENSOR REMARK 3 T11: 0.5688 T22: 0.5061 REMARK 3 T33: 0.6916 T12: 0.0280 REMARK 3 T13: 0.0566 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 1.8470 L22: 2.5173 REMARK 3 L33: 2.6537 L12: -0.6101 REMARK 3 L13: 0.9673 L23: -2.6071 REMARK 3 S TENSOR REMARK 3 S11: 0.1704 S12: -0.7259 S13: -0.3235 REMARK 3 S21: -0.8663 S22: 1.4799 S23: -0.0608 REMARK 3 S31: 0.2443 S32: -0.3247 S33: -1.6729 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 20) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1367 -15.9781 15.6611 REMARK 3 T TENSOR REMARK 3 T11: 0.6253 T22: 0.4901 REMARK 3 T33: 0.6126 T12: 0.1784 REMARK 3 T13: -0.0034 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 7.4016 L22: 2.4463 REMARK 3 L33: 9.0865 L12: 0.0489 REMARK 3 L13: 0.5848 L23: 4.6683 REMARK 3 S TENSOR REMARK 3 S11: -0.4779 S12: -0.7349 S13: -0.2359 REMARK 3 S21: 1.3573 S22: -0.0559 S23: 0.8832 REMARK 3 S31: 0.8516 S32: -0.0739 S33: 0.5545 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9839 -14.9477 22.7441 REMARK 3 T TENSOR REMARK 3 T11: 1.0446 T22: 1.2109 REMARK 3 T33: 0.9519 T12: 0.4527 REMARK 3 T13: 0.1711 T23: 0.1724 REMARK 3 L TENSOR REMARK 3 L11: 3.3841 L22: 3.2846 REMARK 3 L33: 6.1144 L12: -1.4420 REMARK 3 L13: -0.3167 L23: 4.1499 REMARK 3 S TENSOR REMARK 3 S11: -1.3733 S12: -1.0726 S13: -0.1035 REMARK 3 S21: 2.3246 S22: 0.8380 S23: 1.5486 REMARK 3 S31: 1.3801 S32: -0.2337 S33: 0.4676 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2782 0.8072 11.4468 REMARK 3 T TENSOR REMARK 3 T11: 0.5651 T22: 0.4226 REMARK 3 T33: 0.4106 T12: 0.1239 REMARK 3 T13: -0.0171 T23: -0.1264 REMARK 3 L TENSOR REMARK 3 L11: 4.3963 L22: 4.2957 REMARK 3 L33: 6.6371 L12: 0.9149 REMARK 3 L13: -1.8054 L23: -3.8044 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: -0.5444 S13: 1.0498 REMARK 3 S21: 0.9883 S22: 0.3890 S23: -0.1643 REMARK 3 S31: -1.0339 S32: 0.3564 S33: -0.3382 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3967 9.2279 7.8557 REMARK 3 T TENSOR REMARK 3 T11: 0.5398 T22: 0.4386 REMARK 3 T33: 0.6977 T12: 0.1536 REMARK 3 T13: 0.0535 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 6.4157 L22: 2.0821 REMARK 3 L33: 2.0457 L12: -1.3771 REMARK 3 L13: 1.0105 L23: -0.2701 REMARK 3 S TENSOR REMARK 3 S11: 0.4349 S12: 0.7612 S13: -0.3509 REMARK 3 S21: -0.2319 S22: -0.4109 S23: 0.3964 REMARK 3 S31: 0.1897 S32: -0.1292 S33: 0.0153 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 11) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3142 1.3003 8.6195 REMARK 3 T TENSOR REMARK 3 T11: 0.4693 T22: 0.5232 REMARK 3 T33: 0.5166 T12: 0.1398 REMARK 3 T13: 0.0059 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 3.8762 L22: 6.3444 REMARK 3 L33: 4.3608 L12: -0.5190 REMARK 3 L13: 3.2200 L23: 2.7272 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: 1.2646 S13: 0.9303 REMARK 3 S21: -0.2167 S22: -0.4398 S23: 1.2067 REMARK 3 S31: -0.6015 S32: 0.3124 S33: 0.4783 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 15) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0702 0.4580 14.6841 REMARK 3 T TENSOR REMARK 3 T11: 0.5865 T22: 0.5934 REMARK 3 T33: 0.9633 T12: 0.3115 REMARK 3 T13: 0.1035 T23: 0.3660 REMARK 3 L TENSOR REMARK 3 L11: 0.8314 L22: 3.0510 REMARK 3 L33: 3.1464 L12: -0.2005 REMARK 3 L13: 0.7558 L23: 1.5223 REMARK 3 S TENSOR REMARK 3 S11: -0.1072 S12: -0.6901 S13: -0.1343 REMARK 3 S21: 1.1741 S22: 0.2371 S23: 1.0271 REMARK 3 S31: 0.2017 S32: -0.6136 S33: -0.1721 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 19) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9761 15.4366 12.4561 REMARK 3 T TENSOR REMARK 3 T11: 0.4635 T22: 0.5522 REMARK 3 T33: 0.5920 T12: 0.1552 REMARK 3 T13: -0.0107 T23: -0.0461 REMARK 3 L TENSOR REMARK 3 L11: 6.3828 L22: 5.2396 REMARK 3 L33: 7.9219 L12: 2.3052 REMARK 3 L13: -0.9111 L23: 2.2736 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: 0.1165 S13: 0.9841 REMARK 3 S21: 0.5142 S22: -0.6000 S23: -0.1607 REMARK 3 S31: 0.4767 S32: 1.0959 S33: 0.1258 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 26) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8297 16.6830 11.2837 REMARK 3 T TENSOR REMARK 3 T11: 0.7288 T22: 0.6608 REMARK 3 T33: 1.0336 T12: 0.2488 REMARK 3 T13: 0.0868 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 5.1836 L22: 5.9488 REMARK 3 L33: 3.7308 L12: 0.0686 REMARK 3 L13: -0.2874 L23: -0.3709 REMARK 3 S TENSOR REMARK 3 S11: -0.8766 S12: 0.4523 S13: -0.8509 REMARK 3 S21: 0.7696 S22: 0.5039 S23: -0.3731 REMARK 3 S31: -0.6833 S32: 0.6897 S33: 0.5933 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 30) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1216 -0.2528 17.9162 REMARK 3 T TENSOR REMARK 3 T11: 0.6328 T22: 0.6745 REMARK 3 T33: 0.5300 T12: 0.2122 REMARK 3 T13: 0.0845 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 6.2336 L22: 1.6615 REMARK 3 L33: 5.8446 L12: 0.6658 REMARK 3 L13: -0.3244 L23: -2.0220 REMARK 3 S TENSOR REMARK 3 S11: -0.3308 S12: -1.3494 S13: 0.0375 REMARK 3 S21: 0.8933 S22: -0.4331 S23: 0.3715 REMARK 3 S31: -0.1555 S32: -0.5431 S33: 0.8215 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8FZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-23. REMARK 100 THE DEPOSITION ID IS D_1000271611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.8500 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : FLAT SI RH COATED M0, REMARK 200 KIRKPATRICK-BAEZ FLAT BENT SI M1 REMARK 200 & M2 REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION 10-JAN-2022 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 36.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 22.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 16.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.19.2_4158 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: FLAT PARALLEL PIPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31% MPD, 0.05 M NA-CACODYLATE PH 6.0, REMARK 280 0.012 SPERMINE-HCL, 0.1 M KCL AND 0.002 M MGCL2, 0.005 M MNCL2- REMARK 280 TETRAHYDRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 C B 21 REMARK 465 A B 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U A 1 O5' C5' C4' O4' C3' C2' O2' REMARK 470 U A 1 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U A 1 C5 C6 REMARK 470 U B 1 O5' C5' C4' O4' C3' C2' O2' REMARK 470 U B 1 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B 1 C5 C6 REMARK 470 U B 23 P OP1 OP2 O5' C5' C4' O4' REMARK 470 U B 23 C3' C2' O2' C1' N1 C2 O2 REMARK 470 U B 23 N3 C4 O4 C5 C6 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 103 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 4 N7 REMARK 620 2 HOH A 206 O 96.5 REMARK 620 3 HOH A 210 O 82.8 96.1 REMARK 620 4 HOH A 211 O 79.6 175.4 81.1 REMARK 620 5 HOH A 216 O 97.2 111.9 151.7 71.2 REMARK 620 6 HOH A 217 O 163.4 79.5 81.6 103.5 99.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 102 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 9 OP1 REMARK 620 2 HOH A 215 O 50.1 REMARK 620 3 G B 30 N7 45.7 4.4 REMARK 620 4 HOH B 202 O 47.6 3.6 2.7 REMARK 620 5 HOH B 206 O 49.5 0.6 3.8 3.0 REMARK 620 6 HOH B 209 O 48.1 3.4 4.0 5.2 3.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 103 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 19 OP2 REMARK 620 2 HOH A 204 O 111.3 REMARK 620 3 HOH A 205 O 112.2 4.3 REMARK 620 4 HOH A 207 O 111.4 7.1 3.0 REMARK 620 5 A B 18 OP2 114.5 4.2 2.7 5.3 REMARK 620 6 HOH B 203 O 110.3 2.1 3.1 5.4 4.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 102 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 30 N7 REMARK 620 2 HOH A 203 O 95.2 REMARK 620 3 HOH A 212 O 84.4 88.5 REMARK 620 4 C B 9 OP1 84.7 14.7 97.6 REMARK 620 5 HOH B 205 O 89.8 89.9 173.7 79.6 REMARK 620 6 HOH B 207 O 173.4 86.3 102.1 95.6 83.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7REX RELATED DB: PDB REMARK 900 PREQ1 RIBOSWITCH CLASS I TYPE I REMARK 900 RELATED ID: 8FB3 RELATED DB: PDB REMARK 900 PREQ1 RIBOSWITCH CLASS I TYPE I REMARK 900 RELATED ID: 6VUI RELATED DB: PDB REMARK 900 PREQ1 RIBOSWITCH CLASS I TYPE II REMARK 900 RELATED ID: 6VUH RELATED DB: PDB REMARK 900 PREQ1 RIBOSWITCH CLASS I TYPE II DBREF1 8FZA A 1 30 GB DADKPC010000024.1 DBREF2 8FZA A DADKPC010000024.1 47026 47060 DBREF1 8FZA B 1 30 GB DADKPC010000024.1 DBREF2 8FZA B DADKPC010000024.1 47026 47060 SEQADV 8FZA C A 21 GB DADKPC010 G 47046 CONFLICT SEQADV 8FZA A GB DADKPC010 G 47047 DELETION SEQADV 8FZA A GB DADKPC010 U 47048 DELETION SEQADV 8FZA A GB DADKPC010 U 47049 DELETION SEQADV 8FZA A GB DADKPC010 A 47050 DELETION SEQADV 8FZA A GB DADKPC010 C 47053 DELETION SEQADV 8FZA C B 21 GB DADKPC010 G 47046 CONFLICT SEQADV 8FZA B GB DADKPC010 G 47047 DELETION SEQADV 8FZA B GB DADKPC010 U 47048 DELETION SEQADV 8FZA B GB DADKPC010 U 47049 DELETION SEQADV 8FZA B GB DADKPC010 A 47050 DELETION SEQADV 8FZA B GB DADKPC010 C 47053 DELETION SEQRES 1 A 30 U U G G G U U C C C U C A SEQRES 2 A 30 C C C C A A U C A U A A A SEQRES 3 A 30 A A G G SEQRES 1 B 30 U U G G G U U C C C U C A SEQRES 2 B 30 C C C C A A U C A U A A A SEQRES 3 B 30 A A G G HET PRF A 101 13 HET MN A 102 1 HET MN A 103 1 HET PRF B 101 13 HET MN B 102 1 HET MN B 103 1 HETNAM PRF 7-DEAZA-7-AMINOMETHYL-GUANINE HETNAM MN MANGANESE (II) ION FORMUL 3 PRF 2(C7 H9 N5 O) FORMUL 4 MN 4(MN 2+) FORMUL 9 HOH *31(H2 O) LINK N7 G A 4 MN MN A 103 1555 1555 2.52 LINK OP1 C A 9 MN MN B 102 1555 1455 2.10 LINK OP2 A A 19 MN MN B 103 1555 1545 2.11 LINK N7 G A 30 MN MN A 102 1555 1555 2.32 LINK MN MN A 102 O HOH A 203 1555 1555 2.22 LINK MN MN A 102 O HOH A 212 1555 1555 2.17 LINK MN MN A 102 OP1 C B 9 1655 1555 2.14 LINK MN MN A 102 O HOH B 205 1555 1455 2.12 LINK MN MN A 102 O HOH B 207 1555 1455 2.16 LINK MN MN A 103 O HOH A 206 1555 1555 2.24 LINK MN MN A 103 O HOH A 210 1555 1555 2.16 LINK MN MN A 103 O HOH A 211 1555 1555 2.13 LINK MN MN A 103 O HOH A 216 1555 1555 2.17 LINK MN MN A 103 O HOH A 217 1555 1555 2.24 LINK O HOH A 204 MN MN B 103 1565 1555 2.17 LINK O HOH A 205 MN MN B 103 1565 1555 2.19 LINK O HOH A 207 MN MN B 103 1565 1555 2.20 LINK O HOH A 215 MN MN B 102 1655 1555 2.13 LINK OP2 A B 18 MN MN B 103 1555 1555 2.09 LINK N7 G B 30 MN MN B 102 1555 1555 2.54 LINK MN MN B 102 O HOH B 202 1555 1555 2.17 LINK MN MN B 102 O HOH B 206 1555 1555 2.24 LINK MN MN B 102 O HOH B 209 1555 1555 2.19 LINK MN MN B 103 O HOH B 203 1555 1555 2.19 CRYST1 46.739 32.272 51.206 90.00 96.93 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021395 0.000000 0.002600 0.00000 SCALE2 0.000000 0.030987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019673 0.00000