HEADER TRANSFERASE/DNA 01-FEB-23 8G10 TITLE STRUCTURE OF TERNARY COMPLEX OF CGAS WITH DSDNA AND BOUND ITP AND GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 147-507; COMPND 5 SYNONYM: CGAMP SYNTHASE,CGAS,M-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 COMPND 6 DOMAIN-CONTAINING PROTEIN 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: MOUSE CYCLIC GMP-AMP SYNTHASE CATALYTIC DOMAIN 147- COMPND 11 507; THREE EXTRA RESIDUES AT THE N TERMINUS (G FROM TEV SITE, TG FROM COMPND 12 AGEI SITE). FLEXIBLE RESIDUES IN THE COORDINATE WERE DELETED. COMPND 13 MUTATIONS:E211Q, D213N.; COMPND 14 MOL_ID: 2; COMPND 15 MOLECULE: PALINDROMIC DNA18; COMPND 16 CHAIN: E, F, I, J; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CGAS, MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: NHMT MCAT WT QN; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS IMMUNE SYSTEM/DNA, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.WU,J.SOHN REVDAT 2 29-MAY-24 8G10 1 JRNL REVDAT 1 22-MAY-24 8G10 0 JRNL AUTH S.WU,S.B.GABELLI,J.SOHN JRNL TITL THE STRUCTURAL BASIS FOR 2'-5'/3'-5'-CGAMP SYNTHESIS BY JRNL TITL 2 CGAS. JRNL REF NAT COMMUN V. 15 4012 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38740774 JRNL DOI 10.1038/S41467-024-48365-3 REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 5.8.0403 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6400 - 5.9300 1.00 2889 153 0.1657 0.1937 REMARK 3 2 5.9300 - 4.7100 1.00 2796 146 0.1725 0.1935 REMARK 3 3 4.7100 - 4.1200 1.00 2750 145 0.1565 0.1952 REMARK 3 4 4.1200 - 3.7500 1.00 2739 144 0.1829 0.2351 REMARK 3 5 3.7400 - 3.4800 1.00 2721 143 0.1993 0.2289 REMARK 3 6 3.4800 - 3.2700 1.00 2717 143 0.1996 0.2537 REMARK 3 7 3.2700 - 3.1100 1.00 2701 141 0.2246 0.2324 REMARK 3 8 3.1100 - 2.9700 1.00 2721 144 0.2414 0.2913 REMARK 3 9 2.9700 - 2.8600 1.00 2689 141 0.2329 0.2398 REMARK 3 10 2.8600 - 2.7600 1.00 2712 142 0.2298 0.2874 REMARK 3 11 2.7600 - 2.6700 1.00 2656 139 0.2358 0.2785 REMARK 3 12 2.6700 - 2.6000 1.00 2695 143 0.2573 0.2930 REMARK 3 13 2.6000 - 2.5300 1.00 2685 140 0.2490 0.2669 REMARK 3 14 2.5300 - 2.4700 0.96 2584 136 0.2552 0.2849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7662 REMARK 3 ANGLE : 1.154 10639 REMARK 3 CHIRALITY : 0.052 1154 REMARK 3 PLANARITY : 0.012 1073 REMARK 3 DIHEDRAL : 28.665 1511 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 145:507 OR RESID 604:604 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.413 27.093 19.728 REMARK 3 T TENSOR REMARK 3 T11: 0.2734 T22: 0.3066 REMARK 3 T33: 0.3289 T12: 0.0234 REMARK 3 T13: -0.0087 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 1.8825 L22: 2.7758 REMARK 3 L33: 1.5122 L12: -0.5949 REMARK 3 L13: -0.3188 L23: -0.1124 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: -0.0445 S13: 0.1190 REMARK 3 S21: 0.0845 S22: -0.0289 S23: 0.2632 REMARK 3 S31: -0.1661 S32: -0.1518 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN C AND ( RESID 149:507 OR RESID 604:604 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.595 -7.960 18.874 REMARK 3 T TENSOR REMARK 3 T11: 0.3355 T22: 0.3859 REMARK 3 T33: 0.3779 T12: 0.0655 REMARK 3 T13: 0.0574 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 2.3619 L22: 3.0105 REMARK 3 L33: 1.6751 L12: -1.0947 REMARK 3 L13: 0.2636 L23: -0.3760 REMARK 3 S TENSOR REMARK 3 S11: -0.1174 S12: -0.2804 S13: -0.1442 REMARK 3 S21: 0.1089 S22: 0.0826 S23: -0.2471 REMARK 3 S31: 0.1831 S32: 0.1296 S33: 0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN E AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.995 23.218 31.540 REMARK 3 T TENSOR REMARK 3 T11: 0.5922 T22: 0.6968 REMARK 3 T33: 0.4469 T12: -0.1617 REMARK 3 T13: 0.0631 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.6087 L22: 1.6837 REMARK 3 L33: 1.1906 L12: -0.4373 REMARK 3 L13: 0.0678 L23: 1.5393 REMARK 3 S TENSOR REMARK 3 S11: 0.2123 S12: -0.8383 S13: 0.0483 REMARK 3 S21: 0.5739 S22: 0.1326 S23: -0.0234 REMARK 3 S31: -0.2208 S32: 0.2629 S33: 0.0105 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN F AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.736 23.785 32.432 REMARK 3 T TENSOR REMARK 3 T11: 0.7417 T22: 0.7429 REMARK 3 T33: 0.4381 T12: -0.0711 REMARK 3 T13: -0.0198 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 1.9075 L22: 2.1814 REMARK 3 L33: 0.6038 L12: -0.7745 REMARK 3 L13: 0.8317 L23: 0.5553 REMARK 3 S TENSOR REMARK 3 S11: 0.3553 S12: -0.6148 S13: 0.0774 REMARK 3 S21: 0.4553 S22: -0.1326 S23: 0.1318 REMARK 3 S31: 0.5210 S32: 0.8277 S33: 0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN I AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.226 -8.728 17.901 REMARK 3 T TENSOR REMARK 3 T11: 0.5975 T22: 0.5867 REMARK 3 T33: 0.6755 T12: -0.1540 REMARK 3 T13: 0.0128 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 2.6830 L22: 2.1883 REMARK 3 L33: 0.9033 L12: -1.1848 REMARK 3 L13: -1.3301 L23: -0.2302 REMARK 3 S TENSOR REMARK 3 S11: 0.1032 S12: 0.1338 S13: -0.5846 REMARK 3 S21: -0.0305 S22: 0.1658 S23: 0.1353 REMARK 3 S31: 0.4653 S32: -0.5779 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN J AND RESID 1:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.700 -6.716 18.683 REMARK 3 T TENSOR REMARK 3 T11: 0.7069 T22: 0.6890 REMARK 3 T33: 0.6218 T12: -0.0289 REMARK 3 T13: 0.1014 T23: 0.0962 REMARK 3 L TENSOR REMARK 3 L11: 2.9794 L22: 2.0142 REMARK 3 L33: 0.3507 L12: -0.2229 REMARK 3 L13: 0.1540 L23: -0.8822 REMARK 3 S TENSOR REMARK 3 S11: 0.1929 S12: 0.4293 S13: -0.3364 REMARK 3 S21: -0.1563 S22: 0.1110 S23: 0.4688 REMARK 3 S31: -0.1905 S32: -0.5881 S33: 0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8G10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1000272026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : HORIZONTAL BOUNCE SI(111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20210205 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40157 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 29.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE,32%MPD, WITH REMARK 280 0.1 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.00600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.13750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.32950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.13750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.00600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.32950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 144 REMARK 465 LYS A 240 REMARK 465 ARG A 241 REMARK 465 ILE A 242 REMARK 465 PRO A 243 REMARK 465 ARG A 244 REMARK 465 ASN A 351 REMARK 465 ALA A 352 REMARK 465 LYS A 353 REMARK 465 ASP A 354 REMARK 465 GLY A 355 REMARK 465 ASN A 356 REMARK 465 SER A 357 REMARK 465 GLY C 144 REMARK 465 THR C 145 REMARK 465 GLY C 146 REMARK 465 PRO C 147 REMARK 465 ASP C 148 REMARK 465 LYS C 240 REMARK 465 ARG C 241 REMARK 465 ILE C 242 REMARK 465 PRO C 243 REMARK 465 ARG C 244 REMARK 465 GLY C 245 REMARK 465 ASN C 246 REMARK 465 LYS C 353 REMARK 465 ASP C 354 REMARK 465 GLY C 355 REMARK 465 ASN C 356 REMARK 465 SER C 357 REMARK 465 PHE C 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 309 CD1 REMARK 470 ILE C 309 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 301 C - N - CD ANGL. DEV. = -18.2 DEGREES REMARK 500 DT E 12 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DA E 15 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC I 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC J 14 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC J 14 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 149 -55.17 71.55 REMARK 500 ARG A 185 -148.79 58.93 REMARK 500 SER A 207 -59.11 71.55 REMARK 500 PRO A 221 -105.55 -62.48 REMARK 500 GLU A 230 22.75 45.20 REMARK 500 ASN A 246 111.51 -177.55 REMARK 500 GLU A 253 64.35 -156.37 REMARK 500 GLU A 255 -31.67 79.89 REMARK 500 PRO A 301 -56.66 13.08 REMARK 500 TRP A 331 -68.50 -124.38 REMARK 500 ASP A 434 75.64 -118.02 REMARK 500 ARG C 185 -174.66 -179.85 REMARK 500 GLU C 186 37.37 -80.89 REMARK 500 SER C 207 -56.04 76.10 REMARK 500 PRO C 221 -126.85 -74.03 REMARK 500 GLU C 253 -120.30 -136.06 REMARK 500 GLU C 255 -2.01 76.42 REMARK 500 LYS C 315 59.27 -159.26 REMARK 500 ASN C 377 56.34 -143.51 REMARK 500 PHE C 501 70.53 47.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 300 PRO A 301 -96.43 REMARK 500 ARG C 185 GLU C 186 143.39 REMARK 500 ASN C 300 PRO C 301 107.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 732 DISTANCE = 6.28 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GTP A 602 REMARK 610 GTP C 602 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 211 OE1 REMARK 620 2 ASN A 213 OD1 80.0 REMARK 620 3 GTP A 602 O2G 103.5 167.5 REMARK 620 4 GTP A 602 O2B 162.1 82.5 92.8 REMARK 620 5 GTP A 602 O2A 92.4 81.5 86.4 81.4 REMARK 620 6 HOH A 710 O 79.0 84.7 107.6 103.1 164.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 109.3 REMARK 620 3 CYS A 385 SG 106.5 127.6 REMARK 620 4 CYS A 392 SG 94.5 105.0 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 211 OE1 REMARK 620 2 ASN C 213 OD1 84.3 REMARK 620 3 GTP C 602 O2G 102.1 167.6 REMARK 620 4 GTP C 602 O2B 163.7 81.2 93.6 REMARK 620 5 GTP C 602 O2A 97.7 78.7 89.9 86.7 REMARK 620 6 HOH C 716 O 85.1 79.7 111.2 85.1 157.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 378 NE2 REMARK 620 2 CYS C 384 SG 109.4 REMARK 620 3 CYS C 385 SG 104.7 127.9 REMARK 620 4 CYS C 392 SG 99.4 103.3 108.7 REMARK 620 N 1 2 3 DBREF 8G10 A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8G10 C 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8G10 E 1 18 PDB 8G10 8G10 1 18 DBREF 8G10 F 1 18 PDB 8G10 8G10 1 18 DBREF 8G10 I 1 18 PDB 8G10 8G10 1 18 DBREF 8G10 J 1 18 PDB 8G10 8G10 1 18 SEQADV 8G10 GLY A 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G10 THR A 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G10 GLY A 146 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G10 GLN A 211 UNP Q8C6L5 GLU 211 ENGINEERED MUTATION SEQADV 8G10 ASN A 213 UNP Q8C6L5 ASP 213 ENGINEERED MUTATION SEQADV 8G10 GLY C 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G10 THR C 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G10 GLY C 146 UNP Q8C6L5 EXPRESSION TAG SEQADV 8G10 GLN C 211 UNP Q8C6L5 GLU 211 ENGINEERED MUTATION SEQADV 8G10 ASN C 213 UNP Q8C6L5 ASP 213 ENGINEERED MUTATION SEQRES 1 A 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 A 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 A 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 A 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 A 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 A 364 PRO ASN GLN PHE ASN VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 A 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 A 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 A 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 A 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 A 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 A 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 A 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 A 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 A 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 A 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 A 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 A 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 A 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 A 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 A 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 A 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 A 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 A 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 A 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 A 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 A 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 A 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 C 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 C 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 C 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 C 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 C 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 C 364 PRO ASN GLN PHE ASN VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 C 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 C 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 C 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 C 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 C 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 C 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 C 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 C 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 C 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 C 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 C 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 C 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 C 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 C 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 C 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 C 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 C 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 C 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 C 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 C 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 C 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 C 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 E 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 E 18 DC DA DG DA DT SEQRES 1 F 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 F 18 DC DA DG DA DT SEQRES 1 I 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 I 18 DC DA DG DA DT SEQRES 1 J 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 J 18 DC DA DG DA DT HET GTP A 601 32 HET GTP A 602 31 HET MG A 603 1 HET ZN A 604 1 HET GTP C 601 32 HET GTP C 602 31 HET MG C 603 1 HET ZN C 604 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 7 GTP 4(C10 H16 N5 O14 P3) FORMUL 9 MG 2(MG 2+) FORMUL 10 ZN 2(ZN 2+) FORMUL 15 HOH *87(H2 O) HELIX 1 AA1 LYS A 149 ARG A 158 1 10 HELIX 2 AA2 LYS A 160 LYS A 184 1 25 HELIX 3 AA3 GLY A 198 HIS A 203 1 6 HELIX 4 AA4 ASN A 246 LEU A 252 5 7 HELIX 5 AA5 SER A 258 GLU A 276 1 19 HELIX 6 AA6 PRO A 319 LYS A 323 5 5 HELIX 7 AA7 GLY A 333 ARG A 341 1 9 HELIX 8 AA8 PHE A 358 GLU A 361 5 4 HELIX 9 AA9 PHE A 367 ASN A 377 1 11 HELIX 10 AB1 CYS A 393 PHE A 412 1 20 HELIX 11 AB2 GLN A 413 ASP A 416 5 4 HELIX 12 AB3 CYS A 419 ASP A 434 1 16 HELIX 13 AB4 GLN A 436 ARG A 443 5 8 HELIX 14 AB5 ASN A 444 THR A 462 1 19 HELIX 15 AB6 ASP A 482 ASN A 499 1 18 HELIX 16 AB7 GLY A 500 LYS A 506 5 7 HELIX 17 AB8 LEU C 150 ARG C 158 1 9 HELIX 18 AB9 LYS C 160 LYS C 184 1 25 HELIX 19 AC1 PRO C 247 LEU C 252 5 6 HELIX 20 AC2 SER C 258 GLU C 276 1 19 HELIX 21 AC3 PRO C 319 LYS C 323 5 5 HELIX 22 AC4 GLY C 333 GLU C 343 1 11 HELIX 23 AC5 PHE C 367 ASN C 377 1 11 HELIX 24 AC6 CYS C 393 PHE C 412 1 20 HELIX 25 AC7 GLN C 413 ASP C 416 5 4 HELIX 26 AC8 CYS C 419 ASP C 434 1 16 HELIX 27 AC9 GLN C 436 ARG C 443 5 8 HELIX 28 AD1 ASN C 444 GLU C 463 1 20 HELIX 29 AD2 ASP C 482 ASN C 499 1 18 HELIX 30 AD3 GLY C 500 ASP C 505 5 6 SHEET 1 AA1 7 GLU A 193 THR A 197 0 SHEET 2 AA1 7 GLN A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 AA1 7 GLU A 303 SER A 314 1 O SER A 305 N PHE A 212 SHEET 4 AA1 7 PHE A 345 PRO A 349 -1 O LEU A 347 N LEU A 312 SHEET 5 AA1 7 TRP A 363 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 AA1 7 PHE A 234 LYS A 238 -1 N TYR A 235 O TRP A 363 SHEET 7 AA1 7 GLU A 224 GLU A 227 -1 N GLN A 226 O LEU A 236 SHEET 1 AA2 5 GLU A 193 THR A 197 0 SHEET 2 AA2 5 GLN A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 AA2 5 GLU A 303 SER A 314 1 O SER A 305 N PHE A 212 SHEET 4 AA2 5 ALA A 293 ARG A 299 -1 N LEU A 296 O VAL A 306 SHEET 5 AA2 5 ASP A 281 VAL A 284 -1 N ASP A 281 O ARG A 299 SHEET 1 AA3 7 GLU C 193 THR C 197 0 SHEET 2 AA3 7 GLN C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA3 7 GLU C 303 SER C 314 1 O ALA C 311 N LEU C 218 SHEET 4 AA3 7 PHE C 345 VAL C 348 -1 O LEU C 347 N LEU C 312 SHEET 5 AA3 7 TRP C 363 SER C 366 -1 O ARG C 364 N VAL C 348 SHEET 6 AA3 7 PHE C 234 LYS C 238 -1 N TYR C 235 O TRP C 363 SHEET 7 AA3 7 GLU C 224 GLU C 227 -1 N GLN C 226 O LEU C 236 SHEET 1 AA4 5 GLU C 193 THR C 197 0 SHEET 2 AA4 5 GLN C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA4 5 GLU C 303 SER C 314 1 O ALA C 311 N LEU C 218 SHEET 4 AA4 5 ALA C 293 ARG C 299 -1 N VAL C 294 O ILE C 308 SHEET 5 AA4 5 VAL C 282 VAL C 284 -1 N SER C 283 O LEU C 297 LINK OE1 GLN A 211 MG MG A 603 1555 1555 2.27 LINK OD1 ASN A 213 MG MG A 603 1555 1555 2.26 LINK NE2 HIS A 378 ZN ZN A 604 1555 1555 2.05 LINK SG CYS A 384 ZN ZN A 604 1555 1555 2.30 LINK SG CYS A 385 ZN ZN A 604 1555 1555 2.30 LINK SG CYS A 392 ZN ZN A 604 1555 1555 2.34 LINK O2G GTP A 602 MG MG A 603 1555 1555 1.89 LINK O2B GTP A 602 MG MG A 603 1555 1555 2.12 LINK O2A GTP A 602 MG MG A 603 1555 1555 2.30 LINK MG MG A 603 O HOH A 710 1555 1555 2.01 LINK OE1 GLN C 211 MG MG C 603 1555 1555 2.20 LINK OD1 ASN C 213 MG MG C 603 1555 1555 2.31 LINK NE2 HIS C 378 ZN ZN C 604 1555 1555 2.11 LINK SG CYS C 384 ZN ZN C 604 1555 1555 2.29 LINK SG CYS C 385 ZN ZN C 604 1555 1555 2.27 LINK SG CYS C 392 ZN ZN C 604 1555 1555 2.33 LINK O2G GTP C 602 MG MG C 603 1555 1555 1.99 LINK O2B GTP C 602 MG MG C 603 1555 1555 2.14 LINK O2A GTP C 602 MG MG C 603 1555 1555 2.08 LINK MG MG C 603 O HOH C 716 1555 1555 2.36 CISPEP 1 LYS C 315 GLY C 316 0 19.11 CRYST1 78.012 98.659 142.275 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012819 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007029 0.00000