HEADER TRANSFERASE 03-FEB-23 8G2G TITLE CRYSTAL STRUCTURE OF PRMT3 WITH COMPOUND YD1113 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN METHYLTRANSFERASE- COMPND 5 LIKE PROTEIN 3; COMPND 6 EC: 2.1.1.319; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRMT3, HRMT1L3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRMT3, YD1113, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.SONG,A.DONG,C.H.ARROWSMITH,A.M.EDWARDS,Y.DENG,R.HUANG,J.MIN REVDAT 2 21-FEB-24 8G2G 1 JRNL REVDAT 1 26-APR-23 8G2G 0 JRNL AUTH Y.DENG,X.SONG,I.D.IYAMU,A.DONG,J.MIN,R.HUANG JRNL TITL A UNIQUE BINDING POCKET INDUCED BY A NONCANONICAL SAH MIMIC JRNL TITL 2 TO DEVELOP POTENT AND SELECTIVE PRMT INHIBITORS. JRNL REF ACTA PHARM SIN B V. 13 4893 2023 JRNL REFN ISSN 2211-3835 JRNL PMID 38045046 JRNL DOI 10.1016/J.APSB.2023.07.022 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 52232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1153 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3780 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4840 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.20000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.159 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.121 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5037 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4610 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6838 ; 1.422 ; 1.630 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10691 ; 1.279 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 625 ; 7.108 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;33.025 ;23.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 845 ;14.435 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 689 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5738 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1014 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2505 ; 2.302 ; 3.618 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2503 ; 2.300 ; 3.616 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3127 ; 3.162 ; 5.409 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3128 ; 3.162 ; 5.409 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2532 ; 2.961 ; 3.958 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2522 ; 2.951 ; 3.945 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3698 ; 4.477 ; 5.789 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5377 ; 5.854 ;42.323 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5356 ; 5.851 ;42.292 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8G2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-23. REMARK 100 THE DEPOSITION ID IS D_1000271306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53430 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.97500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS HYDROCHLORIDE PH 8.5, 2.0 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.15700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.15700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.90400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.93150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.90400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.93150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.15700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.90400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.93150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.15700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.90400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.93150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 85.15700 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 99.86300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 192 REMARK 465 GLY A 193 REMARK 465 SER A 194 REMARK 465 SER A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 SER A 202 REMARK 465 SER A 203 REMARK 465 GLY A 204 REMARK 465 LEU A 205 REMARK 465 VAL A 206 REMARK 465 PRO A 207 REMARK 465 ARG A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 ASP A 211 REMARK 465 LEU A 212 REMARK 465 GLN A 213 REMARK 465 GLU A 214 REMARK 465 ASP A 215 REMARK 465 GLU A 216 REMARK 465 MET B 192 REMARK 465 GLY B 193 REMARK 465 SER B 194 REMARK 465 SER B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 465 HIS B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 SER B 202 REMARK 465 SER B 203 REMARK 465 GLY B 204 REMARK 465 LEU B 205 REMARK 465 VAL B 206 REMARK 465 PRO B 207 REMARK 465 ARG B 208 REMARK 465 GLY B 209 REMARK 465 SER B 210 REMARK 465 ASP B 211 REMARK 465 LEU B 212 REMARK 465 GLN B 213 REMARK 465 GLU B 214 REMARK 465 ASP B 215 REMARK 465 GLU B 216 REMARK 465 ASP B 217 REMARK 465 GLY B 218 REMARK 465 VAL B 219 REMARK 465 TYR B 220 REMARK 465 LYS B 509 REMARK 465 LYS B 510 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 219 CG1 CG2 REMARK 470 SER A 222 OG REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 279 CE NZ REMARK 470 ARG A 298 NE CZ NH1 NH2 REMARK 470 LYS A 301 NZ REMARK 470 LYS A 312 NZ REMARK 470 LYS A 354 CG CD CE NZ REMARK 470 LYS A 375 CE NZ REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 ILE A 399 CD1 REMARK 470 LYS A 410 CE NZ REMARK 470 LYS A 441 CD CE NZ REMARK 470 LYS A 477 CE NZ REMARK 470 LYS A 489 CG CD CE NZ REMARK 470 LYS A 500 CE NZ REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 LYS A 510 CG CD CE NZ REMARK 470 GLN A 531 CD OE1 NE2 REMARK 470 PHE B 221 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 222 OG REMARK 470 SER B 223 OG REMARK 470 LYS B 279 CE NZ REMARK 470 LYS B 312 CE NZ REMARK 470 LYS B 348 NZ REMARK 470 LYS B 354 CG CD CE NZ REMARK 470 LYS B 375 CE NZ REMARK 470 ARG B 379 CD NE CZ NH1 NH2 REMARK 470 LYS B 396 CD CE NZ REMARK 470 LYS B 410 CE NZ REMARK 470 ILE B 429 CD1 REMARK 470 LYS B 441 CD CE NZ REMARK 470 LYS B 477 CD CE NZ REMARK 470 LYS B 489 CG CD CE NZ REMARK 470 LYS B 500 CE NZ REMARK 470 GLN B 531 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 236 95.82 -69.97 REMARK 500 LEU A 335 -55.82 71.44 REMARK 500 GLU A 338 -19.17 89.03 REMARK 500 ASP A 372 80.48 -153.75 REMARK 500 ILE A 380 -71.66 -114.55 REMARK 500 GLU A 460 -56.49 -130.71 REMARK 500 LYS A 481 -135.62 49.85 REMARK 500 LEU B 335 -52.16 73.28 REMARK 500 GLU B 338 -22.41 93.24 REMARK 500 GLU B 460 -59.56 -129.55 REMARK 500 LYS B 481 -137.49 51.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 8G2G A 211 531 UNP O60678 ANM3_HUMAN 211 531 DBREF 8G2G B 211 531 UNP O60678 ANM3_HUMAN 211 531 SEQADV 8G2G MET A 192 UNP O60678 INITIATING METHIONINE SEQADV 8G2G GLY A 193 UNP O60678 EXPRESSION TAG SEQADV 8G2G SER A 194 UNP O60678 EXPRESSION TAG SEQADV 8G2G SER A 195 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS A 196 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS A 197 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS A 198 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS A 199 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS A 200 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS A 201 UNP O60678 EXPRESSION TAG SEQADV 8G2G SER A 202 UNP O60678 EXPRESSION TAG SEQADV 8G2G SER A 203 UNP O60678 EXPRESSION TAG SEQADV 8G2G GLY A 204 UNP O60678 EXPRESSION TAG SEQADV 8G2G LEU A 205 UNP O60678 EXPRESSION TAG SEQADV 8G2G VAL A 206 UNP O60678 EXPRESSION TAG SEQADV 8G2G PRO A 207 UNP O60678 EXPRESSION TAG SEQADV 8G2G ARG A 208 UNP O60678 EXPRESSION TAG SEQADV 8G2G GLY A 209 UNP O60678 EXPRESSION TAG SEQADV 8G2G SER A 210 UNP O60678 EXPRESSION TAG SEQADV 8G2G MET B 192 UNP O60678 INITIATING METHIONINE SEQADV 8G2G GLY B 193 UNP O60678 EXPRESSION TAG SEQADV 8G2G SER B 194 UNP O60678 EXPRESSION TAG SEQADV 8G2G SER B 195 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS B 196 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS B 197 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS B 198 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS B 199 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS B 200 UNP O60678 EXPRESSION TAG SEQADV 8G2G HIS B 201 UNP O60678 EXPRESSION TAG SEQADV 8G2G SER B 202 UNP O60678 EXPRESSION TAG SEQADV 8G2G SER B 203 UNP O60678 EXPRESSION TAG SEQADV 8G2G GLY B 204 UNP O60678 EXPRESSION TAG SEQADV 8G2G LEU B 205 UNP O60678 EXPRESSION TAG SEQADV 8G2G VAL B 206 UNP O60678 EXPRESSION TAG SEQADV 8G2G PRO B 207 UNP O60678 EXPRESSION TAG SEQADV 8G2G ARG B 208 UNP O60678 EXPRESSION TAG SEQADV 8G2G GLY B 209 UNP O60678 EXPRESSION TAG SEQADV 8G2G SER B 210 UNP O60678 EXPRESSION TAG SEQRES 1 A 340 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 340 LEU VAL PRO ARG GLY SER ASP LEU GLN GLU ASP GLU ASP SEQRES 3 A 340 GLY VAL TYR PHE SER SER TYR GLY HIS TYR GLY ILE HIS SEQRES 4 A 340 GLU GLU MET LEU LYS ASP LYS ILE ARG THR GLU SER TYR SEQRES 5 A 340 ARG ASP PHE ILE TYR GLN ASN PRO HIS ILE PHE LYS ASP SEQRES 6 A 340 LYS VAL VAL LEU ASP VAL GLY CYS GLY THR GLY ILE LEU SEQRES 7 A 340 SER MET PHE ALA ALA LYS ALA GLY ALA LYS LYS VAL LEU SEQRES 8 A 340 GLY VAL ASP GLN SER GLU ILE LEU TYR GLN ALA MET ASP SEQRES 9 A 340 ILE ILE ARG LEU ASN LYS LEU GLU ASP THR ILE THR LEU SEQRES 10 A 340 ILE LYS GLY LYS ILE GLU GLU VAL HIS LEU PRO VAL GLU SEQRES 11 A 340 LYS VAL ASP VAL ILE ILE SER GLU TRP MET GLY TYR PHE SEQRES 12 A 340 LEU LEU PHE GLU SER MET LEU ASP SER VAL LEU TYR ALA SEQRES 13 A 340 LYS ASN LYS TYR LEU ALA LYS GLY GLY SER VAL TYR PRO SEQRES 14 A 340 ASP ILE CYS THR ILE SER LEU VAL ALA VAL SER ASP VAL SEQRES 15 A 340 ASN LYS HIS ALA ASP ARG ILE ALA PHE TRP ASP ASP VAL SEQRES 16 A 340 TYR GLY PHE LYS MET SER CYS MET LYS LYS ALA VAL ILE SEQRES 17 A 340 PRO GLU ALA VAL VAL GLU VAL LEU ASP PRO LYS THR LEU SEQRES 18 A 340 ILE SER GLU PRO CYS GLY ILE LYS HIS ILE ASP CYS HIS SEQRES 19 A 340 THR THR SER ILE SER ASP LEU GLU PHE SER SER ASP PHE SEQRES 20 A 340 THR LEU LYS ILE THR ARG THR SER MET CYS THR ALA ILE SEQRES 21 A 340 ALA GLY TYR PHE ASP ILE TYR PHE GLU LYS ASN CYS HIS SEQRES 22 A 340 ASN ARG VAL VAL PHE SER THR GLY PRO GLN SER THR LYS SEQRES 23 A 340 THR HIS TRP LYS GLN THR VAL PHE LEU LEU GLU LYS PRO SEQRES 24 A 340 PHE SER VAL LYS ALA GLY GLU ALA LEU LYS GLY LYS VAL SEQRES 25 A 340 THR VAL HIS LYS ASN LYS LYS ASP PRO ARG SER LEU THR SEQRES 26 A 340 VAL THR LEU THR LEU ASN ASN SER THR GLN THR TYR GLY SEQRES 27 A 340 LEU GLN SEQRES 1 B 340 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 340 LEU VAL PRO ARG GLY SER ASP LEU GLN GLU ASP GLU ASP SEQRES 3 B 340 GLY VAL TYR PHE SER SER TYR GLY HIS TYR GLY ILE HIS SEQRES 4 B 340 GLU GLU MET LEU LYS ASP LYS ILE ARG THR GLU SER TYR SEQRES 5 B 340 ARG ASP PHE ILE TYR GLN ASN PRO HIS ILE PHE LYS ASP SEQRES 6 B 340 LYS VAL VAL LEU ASP VAL GLY CYS GLY THR GLY ILE LEU SEQRES 7 B 340 SER MET PHE ALA ALA LYS ALA GLY ALA LYS LYS VAL LEU SEQRES 8 B 340 GLY VAL ASP GLN SER GLU ILE LEU TYR GLN ALA MET ASP SEQRES 9 B 340 ILE ILE ARG LEU ASN LYS LEU GLU ASP THR ILE THR LEU SEQRES 10 B 340 ILE LYS GLY LYS ILE GLU GLU VAL HIS LEU PRO VAL GLU SEQRES 11 B 340 LYS VAL ASP VAL ILE ILE SER GLU TRP MET GLY TYR PHE SEQRES 12 B 340 LEU LEU PHE GLU SER MET LEU ASP SER VAL LEU TYR ALA SEQRES 13 B 340 LYS ASN LYS TYR LEU ALA LYS GLY GLY SER VAL TYR PRO SEQRES 14 B 340 ASP ILE CYS THR ILE SER LEU VAL ALA VAL SER ASP VAL SEQRES 15 B 340 ASN LYS HIS ALA ASP ARG ILE ALA PHE TRP ASP ASP VAL SEQRES 16 B 340 TYR GLY PHE LYS MET SER CYS MET LYS LYS ALA VAL ILE SEQRES 17 B 340 PRO GLU ALA VAL VAL GLU VAL LEU ASP PRO LYS THR LEU SEQRES 18 B 340 ILE SER GLU PRO CYS GLY ILE LYS HIS ILE ASP CYS HIS SEQRES 19 B 340 THR THR SER ILE SER ASP LEU GLU PHE SER SER ASP PHE SEQRES 20 B 340 THR LEU LYS ILE THR ARG THR SER MET CYS THR ALA ILE SEQRES 21 B 340 ALA GLY TYR PHE ASP ILE TYR PHE GLU LYS ASN CYS HIS SEQRES 22 B 340 ASN ARG VAL VAL PHE SER THR GLY PRO GLN SER THR LYS SEQRES 23 B 340 THR HIS TRP LYS GLN THR VAL PHE LEU LEU GLU LYS PRO SEQRES 24 B 340 PHE SER VAL LYS ALA GLY GLU ALA LEU LYS GLY LYS VAL SEQRES 25 B 340 THR VAL HIS LYS ASN LYS LYS ASP PRO ARG SER LEU THR SEQRES 26 B 340 VAL THR LEU THR LEU ASN ASN SER THR GLN THR TYR GLY SEQRES 27 B 340 LEU GLN HET YVU A 601 32 HET SO4 A 602 5 HET SO4 A 603 5 HET YVU B 601 32 HETNAM YVU 5'-S-[2-(BENZYLCARBAMAMIDO)ETHYL]-5'-THIOADENOSINE HETNAM SO4 SULFATE ION FORMUL 3 YVU 2(C20 H25 N7 O4 S) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *163(H2 O) HELIX 1 AA1 ASP A 217 TYR A 224 1 8 HELIX 2 AA2 HIS A 226 ASP A 236 1 11 HELIX 3 AA3 ASP A 236 ASN A 250 1 15 HELIX 4 AA4 PRO A 251 PHE A 254 5 4 HELIX 5 AA5 GLY A 267 ALA A 276 1 10 HELIX 6 AA6 GLU A 288 ASN A 300 1 13 HELIX 7 AA7 MET A 340 TYR A 351 1 12 HELIX 8 AA8 ASP A 372 ILE A 380 1 9 HELIX 9 AA9 ALA A 381 ASP A 385 5 5 HELIX 10 AB1 MET A 391 CYS A 393 5 3 HELIX 11 AB2 MET A 394 ILE A 399 1 6 HELIX 12 AB3 ASP A 408 LEU A 412 5 5 HELIX 13 AB4 SER A 428 GLU A 433 5 6 HELIX 14 AB5 SER B 222 GLY B 225 5 4 HELIX 15 AB6 HIS B 226 LYS B 235 1 10 HELIX 16 AB7 ASP B 236 GLN B 249 1 14 HELIX 17 AB8 ASN B 250 PHE B 254 5 5 HELIX 18 AB9 GLY B 267 ALA B 276 1 10 HELIX 19 AC1 GLU B 288 ASN B 300 1 13 HELIX 20 AC2 MET B 340 TYR B 351 1 12 HELIX 21 AC3 ASP B 372 ILE B 380 1 9 HELIX 22 AC4 ALA B 381 ASP B 385 5 5 HELIX 23 AC5 MET B 391 CYS B 393 5 3 HELIX 24 AC6 MET B 394 ILE B 399 1 6 HELIX 25 AC7 ASP B 408 LEU B 412 5 5 HELIX 26 AC8 SER B 428 GLU B 433 5 6 SHEET 1 AA1 5 ILE A 306 LYS A 310 0 SHEET 2 AA1 5 LYS A 280 ASP A 285 1 N VAL A 281 O THR A 307 SHEET 3 AA1 5 VAL A 258 VAL A 262 1 N VAL A 259 O LEU A 282 SHEET 4 AA1 5 VAL A 323 ILE A 327 1 O VAL A 325 N LEU A 260 SHEET 5 AA1 5 LEU A 352 TYR A 359 1 O ALA A 353 N VAL A 323 SHEET 1 AA2 5 VAL A 403 GLU A 405 0 SHEET 2 AA2 5 GLN A 482 VAL A 493 -1 O VAL A 484 N VAL A 403 SHEET 3 AA2 5 SER A 446 PHE A 459 -1 N GLY A 453 O THR A 483 SHEET 4 AA2 5 ILE A 362 VAL A 370 -1 N ILE A 362 O TYR A 458 SHEET 5 AA2 5 CYS A 417 ASP A 423 -1 O ILE A 419 N ILE A 365 SHEET 1 AA3 4 VAL A 403 GLU A 405 0 SHEET 2 AA3 4 GLN A 482 VAL A 493 -1 O VAL A 484 N VAL A 403 SHEET 3 AA3 4 SER A 446 PHE A 459 -1 N GLY A 453 O THR A 483 SHEET 4 AA3 4 VAL A 467 SER A 470 -1 O VAL A 467 N PHE A 459 SHEET 1 AA4 4 PHE A 434 LYS A 441 0 SHEET 2 AA4 4 ALA A 498 LYS A 507 -1 O LEU A 499 N LEU A 440 SHEET 3 AA4 4 LEU A 515 LEU A 521 -1 O THR A 520 N LYS A 502 SHEET 4 AA4 4 SER A 524 LEU A 530 -1 O TYR A 528 N VAL A 517 SHEET 1 AA5 5 ILE B 306 LYS B 310 0 SHEET 2 AA5 5 LYS B 280 ASP B 285 1 N VAL B 281 O THR B 307 SHEET 3 AA5 5 VAL B 258 VAL B 262 1 N ASP B 261 O LEU B 282 SHEET 4 AA5 5 VAL B 323 SER B 328 1 O VAL B 325 N LEU B 260 SHEET 5 AA5 5 LEU B 352 TYR B 359 1 O ALA B 353 N VAL B 323 SHEET 1 AA6 5 VAL B 403 GLU B 405 0 SHEET 2 AA6 5 GLN B 482 VAL B 493 -1 O VAL B 484 N VAL B 403 SHEET 3 AA6 5 SER B 446 PHE B 459 -1 N GLY B 453 O THR B 483 SHEET 4 AA6 5 ILE B 362 VAL B 370 -1 N VAL B 368 O ALA B 452 SHEET 5 AA6 5 CYS B 417 ASP B 423 -1 O ILE B 419 N ILE B 365 SHEET 1 AA7 4 VAL B 403 GLU B 405 0 SHEET 2 AA7 4 GLN B 482 VAL B 493 -1 O VAL B 484 N VAL B 403 SHEET 3 AA7 4 SER B 446 PHE B 459 -1 N GLY B 453 O THR B 483 SHEET 4 AA7 4 VAL B 467 SER B 470 -1 O VAL B 467 N PHE B 459 SHEET 1 AA8 4 PHE B 434 LYS B 441 0 SHEET 2 AA8 4 ALA B 498 LYS B 507 -1 O LEU B 499 N LEU B 440 SHEET 3 AA8 4 LEU B 515 LEU B 521 -1 O THR B 518 N THR B 504 SHEET 4 AA8 4 SER B 524 LEU B 530 -1 O TYR B 528 N VAL B 517 CISPEP 1 TYR A 359 PRO A 360 0 -2.80 CISPEP 2 TYR B 359 PRO B 360 0 -5.78 CRYST1 95.808 99.863 170.314 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005872 0.00000