HEADER TRANSFERASE/INHIBITOR 03-FEB-23 8G2I TITLE CRYSTAL STRUCTURE OF PRMT4 WITH COMPOUND YD1290 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-ARGININE METHYLTRANSFERASE CARM1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: METHYLTRANSFERASE DOMAIN; COMPND 5 SYNONYM: COACTIVATOR-ASSOCIATED ARGININE METHYLTRANSFERASE 1,PROTEIN COMPND 6 ARGININE N-METHYLTRANSFERASE 4; COMPND 7 EC: 2.1.1.319; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CARM1, PRMT4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PRMT4, YD1290, TRANSFERASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.SONG,A.DONG,Y.DENG,R.HUANG,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 1 21-FEB-24 8G2I 0 JRNL AUTH Y.DENG,X.SONG,I.D.IYAMU,A.DONG,J.MIN,R.HUANG JRNL TITL A UNIQUE BINDING POCKET INDUCED BY A NONCANONICAL SAH MIMIC JRNL TITL 2 TO DEVELOP POTENT AND SELECTIVE PRMT INHIBITORS. JRNL REF ACTA PHARM SIN B V. 13 4893 2023 JRNL REFN ISSN 2211-3835 JRNL PMID 38045046 JRNL DOI 10.1016/J.APSB.2023.07.022 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2190 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.463 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2726 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2421 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3711 ; 2.006 ; 1.630 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5605 ; 1.468 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 335 ; 7.807 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;35.775 ;23.231 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 425 ;15.016 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3221 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 598 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1329 ; 4.801 ; 4.660 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1327 ; 4.771 ; 4.660 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1664 ; 6.118 ; 6.964 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1665 ; 6.116 ; 6.963 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1397 ; 6.445 ; 5.175 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1398 ; 6.443 ; 5.174 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2047 ; 8.749 ; 7.547 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2905 ;10.391 ;54.075 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2901 ;10.396 ;54.101 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8G2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB. REMARK 100 THE DEPOSITION ID IS D_1000271661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 16.40 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 0.99100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE PH 9.0, 2.0 M MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.37733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.68867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.68867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 91.37733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -45.68867 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 SER A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 ARG A 132 REMARK 465 GLU A 133 REMARK 465 ASN A 134 REMARK 465 LEU A 135 REMARK 465 TYR A 136 REMARK 465 PHE A 137 REMARK 465 GLN A 138 REMARK 465 GLY A 139 REMARK 465 ARG A 140 REMARK 465 THR A 141 REMARK 465 GLU A 142 REMARK 465 GLU A 143 REMARK 465 SER A 144 REMARK 465 SER A 145 REMARK 465 ALA A 146 REMARK 465 VAL A 147 REMARK 465 GLN A 148 REMARK 465 THR A 477 REMARK 465 GLY A 478 REMARK 465 THR A 479 REMARK 465 THR A 480 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 149 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 150 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 151 CG CD OE1 NE2 REMARK 470 ARG A 208 NH1 NH2 REMARK 470 LYS A 209 NZ REMARK 470 LYS A 227 CE NZ REMARK 470 LYS A 241 NZ REMARK 470 SER A 282 OG REMARK 470 GLN A 301 CD OE1 NE2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 354 NZ REMARK 470 GLU A 361 OE1 OE2 REMARK 470 LYS A 363 CD CE NZ REMARK 470 LYS A 375 NZ REMARK 470 LYS A 429 CE NZ REMARK 470 LYS A 444 CG CD CE NZ REMARK 470 ARG A 445 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 446 CD OE1 NE2 REMARK 470 LYS A 462 CD CE NZ REMARK 470 LYS A 470 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 311 CB - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 HIS A 414 CB - CA - C ANGL. DEV. = 14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 150 48.45 -102.58 REMARK 500 GLN A 151 -48.12 -151.38 REMARK 500 LEU A 263 -47.67 69.36 REMARK 500 GLU A 266 -17.90 79.04 REMARK 500 ASP A 299 84.02 -156.97 REMARK 500 TYR A 416 -135.01 49.15 REMARK 500 ASN A 471 58.65 -119.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 282 GLY A 283 -146.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 8G2I A 140 480 UNP Q86X55 CARM1_HUMAN 140 480 SEQADV 8G2I MET A 122 UNP Q86X55 INITIATING METHIONINE SEQADV 8G2I HIS A 123 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I HIS A 124 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I HIS A 125 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I HIS A 126 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I HIS A 127 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I HIS A 128 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I SER A 129 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I SER A 130 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I GLY A 131 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I ARG A 132 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I GLU A 133 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I ASN A 134 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I LEU A 135 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I TYR A 136 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I PHE A 137 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I GLN A 138 UNP Q86X55 EXPRESSION TAG SEQADV 8G2I GLY A 139 UNP Q86X55 EXPRESSION TAG SEQRES 1 A 359 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 359 LEU TYR PHE GLN GLY ARG THR GLU GLU SER SER ALA VAL SEQRES 3 A 359 GLN TYR PHE GLN PHE TYR GLY TYR LEU SER GLN GLN GLN SEQRES 4 A 359 ASN MET MET GLN ASP TYR VAL ARG THR GLY THR TYR GLN SEQRES 5 A 359 ARG ALA ILE LEU GLN ASN HIS THR ASP PHE LYS ASP LYS SEQRES 6 A 359 ILE VAL LEU ASP VAL GLY CYS GLY SER GLY ILE LEU SER SEQRES 7 A 359 PHE PHE ALA ALA GLN ALA GLY ALA ARG LYS ILE TYR ALA SEQRES 8 A 359 VAL GLU ALA SER THR MET ALA GLN HIS ALA GLU VAL LEU SEQRES 9 A 359 VAL LYS SER ASN ASN LEU THR ASP ARG ILE VAL VAL ILE SEQRES 10 A 359 PRO GLY LYS VAL GLU GLU VAL SER LEU PRO GLU GLN VAL SEQRES 11 A 359 ASP ILE ILE ILE SER GLU PRO MET GLY TYR MET LEU PHE SEQRES 12 A 359 ASN GLU ARG MET LEU GLU SER TYR LEU HIS ALA LYS LYS SEQRES 13 A 359 TYR LEU LYS PRO SER GLY ASN MET PHE PRO THR ILE GLY SEQRES 14 A 359 ASP VAL HIS LEU ALA PRO PHE THR ASP GLU GLN LEU TYR SEQRES 15 A 359 MET GLU GLN PHE THR LYS ALA ASN PHE TRP TYR GLN PRO SEQRES 16 A 359 SER PHE HIS GLY VAL ASP LEU SER ALA LEU ARG GLY ALA SEQRES 17 A 359 ALA VAL ASP GLU TYR PHE ARG GLN PRO VAL VAL ASP THR SEQRES 18 A 359 PHE ASP ILE ARG ILE LEU MET ALA LYS SER VAL LYS TYR SEQRES 19 A 359 THR VAL ASN PHE LEU GLU ALA LYS GLU GLY ASP LEU HIS SEQRES 20 A 359 ARG ILE GLU ILE PRO PHE LYS PHE HIS MET LEU HIS SER SEQRES 21 A 359 GLY LEU VAL HIS GLY LEU ALA PHE TRP PHE ASP VAL ALA SEQRES 22 A 359 PHE ILE GLY SER ILE MET THR VAL TRP LEU SER THR ALA SEQRES 23 A 359 PRO THR GLU PRO LEU THR HIS TRP TYR GLN VAL ARG CYS SEQRES 24 A 359 LEU PHE GLN SER PRO LEU PHE ALA LYS ALA GLY ASP THR SEQRES 25 A 359 LEU SER GLY THR CYS LEU LEU ILE ALA ASN LYS ARG GLN SEQRES 26 A 359 SER TYR ASP ILE SER ILE VAL ALA GLN VAL ASP GLN THR SEQRES 27 A 359 GLY SER LYS SER SER ASN LEU LEU ASP LEU LYS ASN PRO SEQRES 28 A 359 PHE PHE ARG TYR THR GLY THR THR HET I0B A 501 46 HET UNX A 502 1 HET UNX A 503 1 HETNAM I0B 5'-([2-(BENZYLCARBAMAMIDO)ETHYL]{3-[N'-(3-BROMOPHENYL) HETNAM 2 I0B CARBAMIMIDAMIDO]PROPYL}AMINO)-5'-DEOXYADENOSINE HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 I0B C30 H38 BR N11 O4 FORMUL 3 UNX 2(X) FORMUL 5 HOH *48(H2 O) HELIX 1 AA1 GLN A 151 GLY A 154 5 4 HELIX 2 AA2 TYR A 155 GLN A 164 1 10 HELIX 3 AA3 ASP A 165 ASN A 179 1 15 HELIX 4 AA4 HIS A 180 PHE A 183 5 4 HELIX 5 AA5 GLY A 196 ALA A 205 1 10 HELIX 6 AA6 THR A 217 ASN A 229 1 13 HELIX 7 AA7 MET A 268 ALA A 275 1 8 HELIX 8 AA8 ASP A 299 ALA A 310 1 12 HELIX 9 AA9 ASN A 311 GLN A 315 5 5 HELIX 10 AB1 LEU A 323 ALA A 325 5 3 HELIX 11 AB2 LEU A 326 ARG A 336 1 11 HELIX 12 AB3 ASP A 344 LEU A 348 5 5 HELIX 13 AB4 LYS A 363 LEU A 367 5 5 SHEET 1 AA1 5 ILE A 235 PRO A 239 0 SHEET 2 AA1 5 LYS A 209 GLU A 214 1 N ALA A 212 O ILE A 238 SHEET 3 AA1 5 ILE A 187 VAL A 191 1 N ASP A 190 O TYR A 211 SHEET 4 AA1 5 VAL A 251 SER A 256 1 O ILE A 255 N LEU A 189 SHEET 5 AA1 5 LEU A 279 PHE A 286 1 O PHE A 286 N ILE A 254 SHEET 1 AA2 4 VAL A 353 ASN A 358 0 SHEET 2 AA2 4 ILE A 289 PHE A 297 -1 N GLY A 290 O VAL A 357 SHEET 3 AA2 4 GLY A 382 ILE A 396 -1 O ALA A 388 N ALA A 295 SHEET 4 AA2 4 THR A 401 SER A 405 -1 O VAL A 402 N PHE A 395 SHEET 1 AA3 6 VAL A 353 ASN A 358 0 SHEET 2 AA3 6 ILE A 289 PHE A 297 -1 N GLY A 290 O VAL A 357 SHEET 3 AA3 6 GLY A 382 ILE A 396 -1 O ALA A 388 N ALA A 295 SHEET 4 AA3 6 GLN A 417 ALA A 428 -1 O LEU A 426 N VAL A 384 SHEET 5 AA3 6 VAL A 339 ASP A 341 -1 N VAL A 339 O ARG A 419 SHEET 6 AA3 6 PHE A 473 PHE A 474 1 O PHE A 473 N VAL A 340 SHEET 1 AA4 4 ARG A 369 HIS A 377 0 SHEET 2 AA4 4 THR A 433 ALA A 442 -1 O CYS A 438 N ILE A 372 SHEET 3 AA4 4 TYR A 448 VAL A 456 -1 O ASP A 449 N ILE A 441 SHEET 4 AA4 4 LYS A 462 ASP A 468 -1 O ASN A 465 N ILE A 452 CISPEP 1 PHE A 286 PRO A 287 0 10.40 CRYST1 86.659 86.659 137.066 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011539 0.006662 0.000000 0.00000 SCALE2 0.000000 0.013325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007296 0.00000