data_8G2N # _entry.id 8G2N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8G2N pdb_00008g2n 10.2210/pdb8g2n/pdb WWPDB D_1000272006 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8G2N _pdbx_database_status.recvd_initial_deposition_date 2023-02-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email lyatsun1@swarthmore.edu _pdbx_contact_author.name_first Liliya _pdbx_contact_author.name_last Yatsunyk _pdbx_contact_author.name_mi A _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3946-0939 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Martin, K.N.' 1 0000-0001-6025-262X 'Yatsunyk, L.A.' 2 0000-0003-3946-0939 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of Tetrahymena thermophila G-rich DNA with novel ligand PyDH2' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Martin, K.N.' 1 ? primary 'Yatsunyk, L.A.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'G-rich DNA' 7985.084 1 ? ? ? ? 2 non-polymer syn "4,4'-{pyridine-2,6-diylbis[carbonyl-(1E)-hydrazin-2-yl-1-ylidene-(E)-methanylylidene]}bis(1-methylquinolin-1-ium)" 503.555 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 5 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 6 water nat water 18.015 63 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DT)(DT)(DG)(DG)(DG)(DG)(DT)(DT)(DG)(DG)(DG)(DG)(DT)(DT)(DG)(DG)(DG)(DG)(DT) (DT)(DG)(DG)(DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can GTTGGGGTTGGGGTTGGGGTTGGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "4,4'-{pyridine-2,6-diylbis[carbonyl-(1E)-hydrazin-2-yl-1-ylidene-(E)-methanylylidene]}bis(1-methylquinolin-1-ium)" YSQ 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 SPERMINE SPM 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DT n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DG n 1 8 DT n 1 9 DT n 1 10 DG n 1 11 DG n 1 12 DG n 1 13 DG n 1 14 DT n 1 15 DT n 1 16 DG n 1 17 DG n 1 18 DG n 1 19 DG n 1 20 DT n 1 21 DT n 1 22 DG n 1 23 DG n 1 24 DG n 1 25 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 25 _pdbx_entity_src_syn.organism_scientific 'Tetrahymena thermophila' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 5911 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 YSQ non-polymer . "4,4'-{pyridine-2,6-diylbis[carbonyl-(1E)-hydrazin-2-yl-1-ylidene-(E)-methanylylidene]}bis(1-methylquinolin-1-ium)" ? 'C29 H25 N7 O2 2' 503.555 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DG 11 11 11 DG DG A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DT 15 15 15 DT DT A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DT 20 20 20 DT DT A . n A 1 21 DT 21 21 21 DT DT A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DG 23 23 23 DG DG A . n A 1 24 DG 24 24 24 DG DG A . n A 1 25 DG 25 25 25 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YSQ 1 104 1 YSQ LIG A . C 3 MG 1 105 1 MG MG A . D 4 K 1 102 2 K K A . E 4 K 1 101 3 K K A . F 4 K 1 103 4 K K A . G 5 SPM 1 106 5 SPM SPM A . H 6 HOH 1 201 110 HOH HOH A . H 6 HOH 2 202 35 HOH HOH A . H 6 HOH 3 203 98 HOH HOH A . H 6 HOH 4 204 39 HOH HOH A . H 6 HOH 5 205 84 HOH HOH A . H 6 HOH 6 206 45 HOH HOH A . H 6 HOH 7 207 68 HOH HOH A . H 6 HOH 8 208 67 HOH HOH A . H 6 HOH 9 209 80 HOH HOH A . H 6 HOH 10 210 130 HOH HOH A . H 6 HOH 11 211 72 HOH HOH A . H 6 HOH 12 212 19 HOH HOH A . H 6 HOH 13 213 81 HOH HOH A . H 6 HOH 14 214 15 HOH HOH A . H 6 HOH 15 215 54 HOH HOH A . H 6 HOH 16 216 1 HOH HOH A . H 6 HOH 17 217 134 HOH HOH A . H 6 HOH 18 218 34 HOH HOH A . H 6 HOH 19 219 46 HOH HOH A . H 6 HOH 20 220 4 HOH HOH A . H 6 HOH 21 221 12 HOH HOH A . H 6 HOH 22 222 11 HOH HOH A . H 6 HOH 23 223 2 HOH HOH A . H 6 HOH 24 224 30 HOH HOH A . H 6 HOH 25 225 74 HOH HOH A . H 6 HOH 26 226 75 HOH HOH A . H 6 HOH 27 227 52 HOH HOH A . H 6 HOH 28 228 8 HOH HOH A . H 6 HOH 29 229 7 HOH HOH A . H 6 HOH 30 230 20 HOH HOH A . H 6 HOH 31 231 5 HOH HOH A . H 6 HOH 32 232 26 HOH HOH A . H 6 HOH 33 233 76 HOH HOH A . H 6 HOH 34 234 126 HOH HOH A . H 6 HOH 35 235 65 HOH HOH A . H 6 HOH 36 236 21 HOH HOH A . H 6 HOH 37 237 104 HOH HOH A . H 6 HOH 38 238 29 HOH HOH A . H 6 HOH 39 239 24 HOH HOH A . H 6 HOH 40 240 63 HOH HOH A . H 6 HOH 41 241 9 HOH HOH A . H 6 HOH 42 242 125 HOH HOH A . H 6 HOH 43 243 49 HOH HOH A . H 6 HOH 44 244 50 HOH HOH A . H 6 HOH 45 245 112 HOH HOH A . H 6 HOH 46 246 69 HOH HOH A . H 6 HOH 47 247 105 HOH HOH A . H 6 HOH 48 248 70 HOH HOH A . H 6 HOH 49 249 28 HOH HOH A . H 6 HOH 50 250 59 HOH HOH A . H 6 HOH 51 251 10 HOH HOH A . H 6 HOH 52 252 16 HOH HOH A . H 6 HOH 53 253 17 HOH HOH A . H 6 HOH 54 254 60 HOH HOH A . H 6 HOH 55 255 128 HOH HOH A . H 6 HOH 56 256 27 HOH HOH A . H 6 HOH 57 257 87 HOH HOH A . H 6 HOH 58 258 71 HOH HOH A . H 6 HOH 59 259 22 HOH HOH A . H 6 HOH 60 260 131 HOH HOH A . H 6 HOH 61 261 132 HOH HOH A . H 6 HOH 62 262 133 HOH HOH A . H 6 HOH 63 263 73 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 8G2N _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.332 _cell.length_a_esd ? _cell.length_b 47.314 _cell.length_b_esd ? _cell.length_c 87.106 _cell.length_c_esd ? _cell.volume 157978.947 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8G2N _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8G2N _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.6 _exptl_crystal.description 'Flat golden rhombus' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.02 M MgCl2, 0.165 M KCl, 0.04 M sodium cacodylate pH 6.5, 0.012 M spermine tetrahydrochloride, 39% (+/-)-2-Methyl-2,4-pentanediol (MPD) ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 295 # _diffrn.ambient_environment ? _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-12-10 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8856 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.8856 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 24.32 _reflns.entry_id 8G2N _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.33 _reflns.d_resolution_low 29.78 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 18082 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.026 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.33 _reflns_shell.d_res_low 1.35 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 818 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.758 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 92.1 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 31.46 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8G2N _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.33 _refine.ls_d_res_low 29.78 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 18017 _refine.ls_number_reflns_R_free 862 _refine.ls_number_reflns_R_work 17155 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.83 _refine.ls_percent_reflns_R_free 4.78 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1730 _refine.ls_R_factor_R_free 0.1939 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1719 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.1518 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1461 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.33 _refine_hist.d_res_low 29.78 _refine_hist.number_atoms_solvent 63 _refine_hist.number_atoms_total 650 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 531 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0186 ? 703 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.8353 ? 1079 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0930 ? 107 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0214 ? 34 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 31.5753 ? 284 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.33 1.41 . . 128 2664 91.54 . . . . 0.2654 . . . . . . . . . . . 0.2604 'X-RAY DIFFRACTION' 1.41 1.52 . . 141 2766 94.75 . . . . 0.2436 . . . . . . . . . . . 0.2875 'X-RAY DIFFRACTION' 1.52 1.68 . . 148 2878 99.05 . . . . 0.1640 . . . . . . . . . . . 0.2190 'X-RAY DIFFRACTION' 1.68 1.92 . . 140 2918 98.93 . . . . 0.1559 . . . . . . . . . . . 0.1889 'X-RAY DIFFRACTION' 1.92 2.42 . . 139 2930 98.90 . . . . 0.2110 . . . . . . . . . . . 0.2200 'X-RAY DIFFRACTION' 2.42 29.78 . . 166 2999 97.69 . . . . 0.1582 . . . . . . . . . . . 0.1795 # _struct.entry_id 8G2N _struct.title 'Crystal structure of Tetrahymena thermophila G-rich DNA with novel ligand PyDH2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8G2N _struct_keywords.text 'G-quadruplex DNA, ligand intercalation, four tetrads, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8G2N _struct_ref.pdbx_db_accession 8G2N _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8G2N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 25 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8G2N _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 25 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 25 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DT 2 O4 ? ? ? 1_555 E K . K ? ? A DT 2 A K 101 4_555 ? ? ? ? ? ? ? 2.894 ? ? metalc2 metalc ? ? A DG 4 O6 ? ? ? 1_555 E K . K ? ? A DG 4 A K 101 1_555 ? ? ? ? ? ? ? 2.955 ? ? metalc3 metalc ? ? A DG 4 O6 ? ? ? 1_555 D K . K ? ? A DG 4 A K 102 1_555 ? ? ? ? ? ? ? 2.784 ? ? metalc4 metalc ? ? A DG 5 O6 ? ? ? 1_555 D K . K ? ? A DG 5 A K 102 1_555 ? ? ? ? ? ? ? 2.712 ? ? metalc5 metalc ? ? A DG 6 O6 ? ? ? 1_555 F K . K ? ? A DG 6 A K 103 1_555 ? ? ? ? ? ? ? 2.743 ? ? metalc6 metalc ? ? A DG 7 O6 ? ? ? 1_555 F K . K ? ? A DG 7 A K 103 1_555 ? ? ? ? ? ? ? 2.856 ? ? metalc7 metalc ? ? A DG 10 O6 ? ? ? 1_555 F K . K ? ? A DG 10 A K 103 1_555 ? ? ? ? ? ? ? 2.737 ? ? metalc8 metalc ? ? A DG 11 O6 ? ? ? 1_555 F K . K ? ? A DG 11 A K 103 1_555 ? ? ? ? ? ? ? 2.763 ? ? metalc9 metalc ? ? A DG 12 O6 ? ? ? 1_555 D K . K ? ? A DG 12 A K 102 1_555 ? ? ? ? ? ? ? 2.745 ? ? metalc10 metalc ? ? A DG 13 O6 ? ? ? 1_555 E K . K ? ? A DG 13 A K 101 1_555 ? ? ? ? ? ? ? 2.806 ? ? metalc11 metalc ? ? A DG 13 O6 ? ? ? 1_555 D K . K ? ? A DG 13 A K 102 1_555 ? ? ? ? ? ? ? 2.928 ? ? metalc12 metalc ? ? A DT 14 O2 ? ? ? 1_555 E K . K ? ? A DT 14 A K 101 1_555 ? ? ? ? ? ? ? 2.762 ? ? metalc13 metalc ? ? A DT 15 O2 ? ? ? 1_555 E K . K ? ? A DT 15 A K 101 1_555 ? ? ? ? ? ? ? 2.755 ? ? metalc14 metalc ? ? A DG 16 O6 ? ? ? 1_555 E K . K ? ? A DG 16 A K 101 1_555 ? ? ? ? ? ? ? 2.814 ? ? metalc15 metalc ? ? A DG 16 O6 ? ? ? 1_555 D K . K ? ? A DG 16 A K 102 1_555 ? ? ? ? ? ? ? 2.749 ? ? metalc16 metalc ? ? A DG 17 O6 ? ? ? 1_555 D K . K ? ? A DG 17 A K 102 1_555 ? ? ? ? ? ? ? 2.743 ? ? metalc17 metalc ? ? A DG 18 O6 ? ? ? 1_555 F K . K ? ? A DG 18 A K 103 1_555 ? ? ? ? ? ? ? 2.750 ? ? metalc18 metalc ? ? A DG 19 O6 ? ? ? 1_555 F K . K ? ? A DG 19 A K 103 1_555 ? ? ? ? ? ? ? 2.798 ? ? metalc19 metalc ? ? A DG 22 O6 ? ? ? 1_555 F K . K ? ? A DG 22 A K 103 1_555 ? ? ? ? ? ? ? 2.754 ? ? metalc20 metalc ? ? A DG 23 O6 A ? ? 1_555 F K . K ? ? A DG 23 A K 103 1_555 ? ? ? ? ? ? ? 2.577 ? ? metalc21 metalc ? ? A DG 23 O6 B ? ? 1_555 F K . K ? ? A DG 23 A K 103 1_555 ? ? ? ? ? ? ? 2.999 ? ? metalc22 metalc ? ? A DG 24 O6 A ? ? 1_555 D K . K ? ? A DG 24 A K 102 1_555 ? ? ? ? ? ? ? 2.707 ? ? metalc23 metalc ? ? A DG 24 O6 B ? ? 1_555 D K . K ? ? A DG 24 A K 102 1_555 ? ? ? ? ? ? ? 2.734 ? ? metalc24 metalc ? ? A DG 25 O6 ? ? ? 1_555 E K . K ? ? A DG 25 A K 101 1_555 ? ? ? ? ? ? ? 2.892 ? ? metalc25 metalc ? ? A DG 25 O6 ? ? ? 1_555 D K . K ? ? A DG 25 A K 102 1_555 ? ? ? ? ? ? ? 2.849 ? ? metalc26 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 105 A HOH 207 8_445 ? ? ? ? ? ? ? 2.061 ? ? metalc27 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 105 A HOH 208 1_555 ? ? ? ? ? ? ? 2.208 ? ? metalc28 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 105 A HOH 219 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc29 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 105 A HOH 246 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc30 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 105 A HOH 248 8_445 ? ? ? ? ? ? ? 1.998 ? ? metalc31 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 105 A HOH 258 8_445 ? ? ? ? ? ? ? 2.283 ? ? hydrog1 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 4 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 4 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 25 N2 ? ? A DG 4 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 25 N1 ? ? A DG 4 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 12 N2 ? ? A DG 5 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 12 N1 ? ? A DG 5 A DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 24 O6 A ? A DG 5 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 24 O6 B ? A DG 5 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 24 N7 A ? A DG 5 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 24 N7 B ? A DG 5 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 11 O6 ? ? A DG 6 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 11 N7 ? ? A DG 6 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 6 N7 ? ? ? 1_555 A DG 23 N2 A ? A DG 6 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 6 N7 ? ? ? 1_555 A DG 23 N2 B ? A DG 6 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 23 N1 A ? A DG 6 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 23 N1 B ? A DG 6 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 7 N7 ? ? ? 1_555 A DG 10 N2 ? ? A DG 7 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DG 10 N1 ? ? A DG 7 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 7 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 7 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 10 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 10 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 10 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 11 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 11 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 12 N7 ? ? ? 1_555 A DG 17 N2 ? ? A DG 12 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 12 O6 ? ? ? 1_555 A DG 17 N1 ? ? A DG 12 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 16 O6 ? ? A DG 13 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 16 N7 ? ? A DG 13 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 16 N1 ? ? ? 1_555 A DG 25 O6 ? ? A DG 16 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 16 N2 ? ? ? 1_555 A DG 25 N7 ? ? A DG 16 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 17 N7 ? ? ? 1_555 A DG 24 N2 A ? A DG 17 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 17 N7 ? ? ? 1_555 A DG 24 N2 B ? A DG 17 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A DG 17 O6 ? ? ? 1_555 A DG 24 N1 A ? A DG 17 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A DG 17 O6 ? ? ? 1_555 A DG 24 N1 B ? A DG 17 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? A DG 18 N1 ? ? ? 1_555 A DG 23 O6 A ? A DG 18 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? A DG 18 N1 ? ? ? 1_555 A DG 23 O6 B ? A DG 18 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? A DG 18 N2 ? ? ? 1_555 A DG 23 N7 A ? A DG 18 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? A DG 18 N2 ? ? ? 1_555 A DG 23 N7 B ? A DG 18 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? A DG 19 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 19 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? A DG 19 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 19 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A DT 2 ? A DT 2 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 4 ? A DG 4 ? 1_555 4.4 ? 2 O4 ? A DT 2 ? A DT 2 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 13 ? A DG 13 ? 1_555 4.3 ? 3 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 13 ? A DG 13 ? 1_555 8.0 ? 4 O4 ? A DT 2 ? A DT 2 ? 1_555 K ? E K . ? A K 101 ? 4_555 O2 ? A DT 14 ? A DT 14 ? 1_555 9.4 ? 5 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 4_555 O2 ? A DT 14 ? A DT 14 ? 1_555 13.6 ? 6 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 101 ? 4_555 O2 ? A DT 14 ? A DT 14 ? 1_555 8.3 ? 7 O4 ? A DT 2 ? A DT 2 ? 1_555 K ? E K . ? A K 101 ? 4_555 O2 ? A DT 15 ? A DT 15 ? 1_555 11.7 ? 8 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 4_555 O2 ? A DT 15 ? A DT 15 ? 1_555 13.6 ? 9 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 101 ? 4_555 O2 ? A DT 15 ? A DT 15 ? 1_555 14.2 ? 10 O2 ? A DT 14 ? A DT 14 ? 1_555 K ? E K . ? A K 101 ? 4_555 O2 ? A DT 15 ? A DT 15 ? 1_555 9.9 ? 11 O4 ? A DT 2 ? A DT 2 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 16 ? A DG 16 ? 1_555 3.1 ? 12 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 16 ? A DG 16 ? 1_555 7.4 ? 13 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 16 ? A DG 16 ? 1_555 4.3 ? 14 O2 ? A DT 14 ? A DT 14 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 16 ? A DG 16 ? 1_555 6.3 ? 15 O2 ? A DT 15 ? A DT 15 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 16 ? A DG 16 ? 1_555 9.9 ? 16 O4 ? A DT 2 ? A DT 2 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 25 ? A DG 25 ? 1_555 5.9 ? 17 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 25 ? A DG 25 ? 1_555 4.7 ? 18 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 25 ? A DG 25 ? 1_555 10.1 ? 19 O2 ? A DT 14 ? A DT 14 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 25 ? A DG 25 ? 1_555 12.6 ? 20 O2 ? A DT 15 ? A DT 15 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 25 ? A DG 25 ? 1_555 9.5 ? 21 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? E K . ? A K 101 ? 4_555 O6 ? A DG 25 ? A DG 25 ? 1_555 7.2 ? 22 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 5 ? A DG 5 ? 1_555 72.0 ? 23 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 119.8 ? 24 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 74.6 ? 25 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 66.4 ? 26 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 103.4 ? 27 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 13 ? A DG 13 ? 1_555 74.9 ? 28 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 103.5 ? 29 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 168.8 ? 30 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 99.9 ? 31 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 16 ? A DG 16 ? 1_555 65.6 ? 32 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 167.4 ? 33 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 114.4 ? 34 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 72.8 ? 35 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 120.2 ? 36 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 17 ? A DG 17 ? 1_555 72.2 ? 37 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 A A DG 24 ? A DG 24 ? 1_555 95.2 ? 38 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 A A DG 24 ? A DG 24 ? 1_555 72.0 ? 39 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 A A DG 24 ? A DG 24 ? 1_555 119.6 ? 40 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 A A DG 24 ? A DG 24 ? 1_555 161.3 ? 41 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 A A DG 24 ? A DG 24 ? 1_555 119.0 ? 42 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 A A DG 24 ? A DG 24 ? 1_555 77.3 ? 43 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 B A DG 24 ? A DG 24 ? 1_555 102.5 ? 44 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 B A DG 24 ? A DG 24 ? 1_555 70.9 ? 45 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 B A DG 24 ? A DG 24 ? 1_555 111.7 ? 46 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 B A DG 24 ? A DG 24 ? 1_555 168.8 ? 47 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 B A DG 24 ? A DG 24 ? 1_555 120.3 ? 48 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 B A DG 24 ? A DG 24 ? 1_555 71.0 ? 49 O6 A A DG 24 ? A DG 24 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 B A DG 24 ? A DG 24 ? 1_555 8.4 ? 50 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 67.4 ? 51 O6 ? A DG 5 ? A DG 5 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 117.8 ? 52 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 167.6 ? 53 O6 ? A DG 13 ? A DG 13 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 101.0 ? 54 O6 ? A DG 16 ? A DG 16 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 68.0 ? 55 O6 ? A DG 17 ? A DG 17 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 100.1 ? 56 O6 A A DG 24 ? A DG 24 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 67.2 ? 57 O6 B A DG 24 ? A DG 24 ? 1_555 K ? D K . ? A K 102 ? 1_555 O6 ? A DG 25 ? A DG 25 ? 1_555 74.3 ? 58 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 7 ? A DG 7 ? 1_555 69.0 ? 59 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 122.0 ? 60 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 71.1 ? 61 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 73.3 ? 62 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 98.4 ? 63 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 72.8 ? 64 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 114.3 ? 65 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 168.3 ? 66 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 98.5 ? 67 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 18 ? A DG 18 ? 1_555 72.8 ? 68 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 165.2 ? 69 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 111.9 ? 70 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 70.6 ? 71 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 120.2 ? 72 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 19 ? A DG 19 ? 1_555 67.9 ? 73 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 96.2 ? 74 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 68.9 ? 75 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 106.7 ? 76 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 166.1 ? 77 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 120.5 ? 78 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 ? A DG 22 ? A DG 22 ? 1_555 71.3 ? 79 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 A A DG 23 ? A DG 23 ? 1_555 78.2 ? 80 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 A A DG 23 ? A DG 23 ? 1_555 125.0 ? 81 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 A A DG 23 ? A DG 23 ? 1_555 159.3 ? 82 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 A A DG 23 ? A DG 23 ? 1_555 113.1 ? 83 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 A A DG 23 ? A DG 23 ? 1_555 66.4 ? 84 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 A A DG 23 ? A DG 23 ? 1_555 90.1 ? 85 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 A A DG 23 ? A DG 23 ? 1_555 72.4 ? 86 O6 ? A DG 6 ? A DG 6 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 B A DG 23 ? A DG 23 ? 1_555 68.6 ? 87 O6 ? A DG 7 ? A DG 7 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 B A DG 23 ? A DG 23 ? 1_555 114.5 ? 88 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 B A DG 23 ? A DG 23 ? 1_555 169.3 ? 89 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 B A DG 23 ? A DG 23 ? 1_555 114.0 ? 90 O6 ? A DG 18 ? A DG 18 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 B A DG 23 ? A DG 23 ? 1_555 76.7 ? 91 O6 ? A DG 19 ? A DG 19 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 B A DG 23 ? A DG 23 ? 1_555 98.7 ? 92 O6 ? A DG 22 ? A DG 22 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 B A DG 23 ? A DG 23 ? 1_555 68.8 ? 93 O6 A A DG 23 ? A DG 23 ? 1_555 K ? F K . ? A K 103 ? 1_555 O6 B A DG 23 ? A DG 23 ? 1_555 11.3 ? 94 O ? H HOH . ? A HOH 207 ? 8_445 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 208 ? 1_555 77.7 ? 95 O ? H HOH . ? A HOH 207 ? 8_445 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 219 ? 1_555 90.5 ? 96 O ? H HOH . ? A HOH 208 ? 1_555 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 219 ? 1_555 102.5 ? 97 O ? H HOH . ? A HOH 207 ? 8_445 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 246 ? 1_555 129.0 ? 98 O ? H HOH . ? A HOH 208 ? 1_555 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 246 ? 1_555 151.3 ? 99 O ? H HOH . ? A HOH 219 ? 1_555 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 246 ? 1_555 89.3 ? 100 O ? H HOH . ? A HOH 207 ? 8_445 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 248 ? 8_445 91.7 ? 101 O ? H HOH . ? A HOH 208 ? 1_555 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 248 ? 8_445 83.2 ? 102 O ? H HOH . ? A HOH 219 ? 1_555 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 248 ? 8_445 174.2 ? 103 O ? H HOH . ? A HOH 246 ? 1_555 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 248 ? 8_445 85.2 ? 104 O ? H HOH . ? A HOH 207 ? 8_445 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 258 ? 8_445 155.7 ? 105 O ? H HOH . ? A HOH 208 ? 1_555 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 258 ? 8_445 78.0 ? 106 O ? H HOH . ? A HOH 219 ? 1_555 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 258 ? 8_445 93.1 ? 107 O ? H HOH . ? A HOH 246 ? 1_555 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 258 ? 8_445 75.2 ? 108 O ? H HOH . ? A HOH 248 ? 8_445 MG ? C MG . ? A MG 105 ? 1_555 O ? H HOH . ? A HOH 258 ? 8_445 87.0 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 261 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 262 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 1.83 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.525 1.593 -0.068 0.010 N 2 1 "O3'" A DG 5 ? ? "C3'" A DG 5 ? ? 1.382 1.419 -0.037 0.006 N 3 1 N7 A DG 10 ? ? C8 A DG 10 ? ? 1.263 1.305 -0.042 0.006 N 4 1 "O3'" A DT 14 ? ? "C3'" A DT 14 ? ? 1.376 1.419 -0.043 0.006 N 5 1 C2 A DT 21 ? ? O2 A DT 21 ? ? 1.170 1.220 -0.050 0.008 N 6 1 "O4'" A DG 23 ? A "C4'" A DG 23 ? A 1.518 1.449 0.069 0.009 N 7 1 "O3'" A DG 23 ? A "C3'" A DG 23 ? A 1.348 1.419 -0.071 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 110.29 108.30 1.99 0.30 N 2 1 "O4'" A DG 23 ? A "C1'" A DG 23 ? A N9 A DG 23 ? A 110.27 108.30 1.97 0.30 N 3 1 "O4'" A DG 23 ? B "C1'" A DG 23 ? B N9 A DG 23 ? B 113.47 108.30 5.17 0.30 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 260 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y,-z+1/2 4 -x,-y,z+1/2 5 x+1/2,y+1/2,z 6 x+1/2,-y+1/2,-z 7 -x+1/2,y+1/2,-z+1/2 8 -x+1/2,-y+1/2,z+1/2 # _pdbx_entry_details.entry_id 8G2N _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 K K K N N 77 MG MG MG N N 78 SPM N1 N N N 79 SPM C2 C N N 80 SPM C3 C N N 81 SPM C4 C N N 82 SPM N5 N N N 83 SPM C6 C N N 84 SPM C7 C N N 85 SPM C8 C N N 86 SPM C9 C N N 87 SPM N10 N N N 88 SPM C11 C N N 89 SPM C12 C N N 90 SPM C13 C N N 91 SPM N14 N N N 92 SPM HN11 H N N 93 SPM HN12 H N N 94 SPM H21 H N N 95 SPM H22 H N N 96 SPM H31 H N N 97 SPM H32 H N N 98 SPM H41 H N N 99 SPM H42 H N N 100 SPM HN5 H N N 101 SPM H61 H N N 102 SPM H62 H N N 103 SPM H71 H N N 104 SPM H72 H N N 105 SPM H81 H N N 106 SPM H82 H N N 107 SPM H91 H N N 108 SPM H92 H N N 109 SPM HN0 H N N 110 SPM H111 H N N 111 SPM H112 H N N 112 SPM H121 H N N 113 SPM H122 H N N 114 SPM H131 H N N 115 SPM H132 H N N 116 SPM HN41 H N N 117 SPM HN42 H N N 118 YSQ C13 C Y N 119 YSQ C17 C Y N 120 YSQ C20 C Y N 121 YSQ C21 C Y N 122 YSQ C22 C N N 123 YSQ C28 C Y N 124 YSQ C02 C N N 125 YSQ C03 C Y N 126 YSQ C04 C Y N 127 YSQ C05 C Y N 128 YSQ C06 C Y N 129 YSQ C07 C Y N 130 YSQ C08 C N N 131 YSQ C11 C N N 132 YSQ C12 C Y N 133 YSQ C14 C Y N 134 YSQ C16 C Y N 135 YSQ C18 C Y N 136 YSQ C19 C Y N 137 YSQ C27 C N N 138 YSQ C29 C Y N 139 YSQ C30 C Y N 140 YSQ C31 C Y N 141 YSQ C32 C Y N 142 YSQ C33 C Y N 143 YSQ C34 C Y N 144 YSQ C36 C Y N 145 YSQ C37 C Y N 146 YSQ C38 C N N 147 YSQ N09 N N N 148 YSQ N10 N N N 149 YSQ N15 N Y N 150 YSQ N24 N Y N 151 YSQ N25 N N N 152 YSQ N26 N N N 153 YSQ N35 N Y N 154 YSQ O01 O N N 155 YSQ O23 O N N 156 YSQ H131 H N N 157 YSQ H201 H N N 158 YSQ H211 H N N 159 YSQ H222 H N N 160 YSQ H223 H N N 161 YSQ H221 H N N 162 YSQ H041 H N N 163 YSQ H051 H N N 164 YSQ H061 H N N 165 YSQ H111 H N N 166 YSQ H141 H N N 167 YSQ H181 H N N 168 YSQ H191 H N N 169 YSQ H271 H N N 170 YSQ H311 H N N 171 YSQ H321 H N N 172 YSQ H331 H N N 173 YSQ H341 H N N 174 YSQ H361 H N N 175 YSQ H371 H N N 176 YSQ H382 H N N 177 YSQ H381 H N N 178 YSQ H383 H N N 179 YSQ H091 H N N 180 YSQ H251 H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 SPM N1 C2 sing N N 79 SPM N1 HN11 sing N N 80 SPM N1 HN12 sing N N 81 SPM C2 C3 sing N N 82 SPM C2 H21 sing N N 83 SPM C2 H22 sing N N 84 SPM C3 C4 sing N N 85 SPM C3 H31 sing N N 86 SPM C3 H32 sing N N 87 SPM C4 N5 sing N N 88 SPM C4 H41 sing N N 89 SPM C4 H42 sing N N 90 SPM N5 C6 sing N N 91 SPM N5 HN5 sing N N 92 SPM C6 C7 sing N N 93 SPM C6 H61 sing N N 94 SPM C6 H62 sing N N 95 SPM C7 C8 sing N N 96 SPM C7 H71 sing N N 97 SPM C7 H72 sing N N 98 SPM C8 C9 sing N N 99 SPM C8 H81 sing N N 100 SPM C8 H82 sing N N 101 SPM C9 N10 sing N N 102 SPM C9 H91 sing N N 103 SPM C9 H92 sing N N 104 SPM N10 C11 sing N N 105 SPM N10 HN0 sing N N 106 SPM C11 C12 sing N N 107 SPM C11 H111 sing N N 108 SPM C11 H112 sing N N 109 SPM C12 C13 sing N N 110 SPM C12 H121 sing N N 111 SPM C12 H122 sing N N 112 SPM C13 N14 sing N N 113 SPM C13 H131 sing N N 114 SPM C13 H132 sing N N 115 SPM N14 HN41 sing N N 116 SPM N14 HN42 sing N N 117 YSQ C20 C21 doub Y N 118 YSQ C20 C19 sing Y N 119 YSQ C21 C16 sing Y N 120 YSQ C22 N15 sing N N 121 YSQ C19 C18 doub Y N 122 YSQ C16 N15 doub Y N 123 YSQ C16 C17 sing Y N 124 YSQ N15 C14 sing Y N 125 YSQ C32 C33 doub Y N 126 YSQ C32 C31 sing Y N 127 YSQ C33 C34 sing Y N 128 YSQ C18 C17 sing Y N 129 YSQ C17 C12 doub Y N 130 YSQ C31 C30 doub Y N 131 YSQ C14 C13 doub Y N 132 YSQ C34 C29 doub Y N 133 YSQ C12 C13 sing Y N 134 YSQ C12 C11 sing N N 135 YSQ C30 C29 sing Y N 136 YSQ C30 N35 sing Y N 137 YSQ C38 N35 sing N N 138 YSQ C29 C28 sing Y N 139 YSQ N35 C36 doub Y N 140 YSQ C11 N10 doub N E 141 YSQ C28 C27 sing N N 142 YSQ C28 C37 doub Y N 143 YSQ C36 C37 sing Y N 144 YSQ N10 N09 sing N N 145 YSQ C27 N26 doub N E 146 YSQ N09 C08 sing N N 147 YSQ N26 N25 sing N N 148 YSQ N25 C02 sing N N 149 YSQ C08 O23 doub N N 150 YSQ C08 C07 sing N N 151 YSQ N24 C07 doub Y N 152 YSQ N24 C03 sing Y N 153 YSQ C02 C03 sing N N 154 YSQ C02 O01 doub N N 155 YSQ C07 C06 sing Y N 156 YSQ C03 C04 doub Y N 157 YSQ C06 C05 doub Y N 158 YSQ C04 C05 sing Y N 159 YSQ C13 H131 sing N N 160 YSQ C20 H201 sing N N 161 YSQ C21 H211 sing N N 162 YSQ C22 H222 sing N N 163 YSQ C22 H223 sing N N 164 YSQ C22 H221 sing N N 165 YSQ C04 H041 sing N N 166 YSQ C05 H051 sing N N 167 YSQ C06 H061 sing N N 168 YSQ C11 H111 sing N N 169 YSQ C14 H141 sing N N 170 YSQ C18 H181 sing N N 171 YSQ C19 H191 sing N N 172 YSQ C27 H271 sing N N 173 YSQ C31 H311 sing N N 174 YSQ C32 H321 sing N N 175 YSQ C33 H331 sing N N 176 YSQ C34 H341 sing N N 177 YSQ C36 H361 sing N N 178 YSQ C37 H371 sing N N 179 YSQ C38 H382 sing N N 180 YSQ C38 H381 sing N N 181 YSQ C38 H383 sing N N 182 YSQ N09 H091 sing N N 183 YSQ N25 H251 sing N N 184 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8G2N 'double helix' 8G2N 'quadruple helix' # _ndb_struct_na_base_pair.model_number 1 _ndb_struct_na_base_pair.i_label_asym_id A _ndb_struct_na_base_pair.i_label_comp_id DG _ndb_struct_na_base_pair.i_label_seq_id 4 _ndb_struct_na_base_pair.i_symmetry 1_555 _ndb_struct_na_base_pair.j_label_asym_id A _ndb_struct_na_base_pair.j_label_comp_id DG _ndb_struct_na_base_pair.j_label_seq_id 13 _ndb_struct_na_base_pair.j_symmetry 1_555 _ndb_struct_na_base_pair.shear 1.568 _ndb_struct_na_base_pair.stretch 3.422 _ndb_struct_na_base_pair.stagger 0.501 _ndb_struct_na_base_pair.buckle -19.016 _ndb_struct_na_base_pair.propeller -2.108 _ndb_struct_na_base_pair.opening -90.351 _ndb_struct_na_base_pair.pair_number 1 _ndb_struct_na_base_pair.pair_name A_DG4:DG13_A _ndb_struct_na_base_pair.i_auth_asym_id A _ndb_struct_na_base_pair.i_auth_seq_id 4 _ndb_struct_na_base_pair.i_PDB_ins_code ? _ndb_struct_na_base_pair.j_auth_asym_id A _ndb_struct_na_base_pair.j_auth_seq_id 13 _ndb_struct_na_base_pair.j_PDB_ins_code ? _ndb_struct_na_base_pair.hbond_type_28 6 _ndb_struct_na_base_pair.hbond_type_12 3 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1R15CA253134 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id YSQ _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id YSQ _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6JJG _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'C 2 2 21' _space_group.name_Hall 'C 2c 2' _space_group.IT_number 20 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 8G2N _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.026088 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021135 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011480 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? 8.66788 8.58341 1.68052 ? 12.31593 0.56275 110.00227 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MG ? ? 9.41153 2.53737 ? ? 2.59044 63.03566 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_