HEADER ANTIBIOTIC/LIPID TRANSPORT 23-FEB-23 8GAK TITLE CRYSTAL STRUCTURE OF E. COLI LPTA IN COMPLEX WITH CHINAVIA UBICA TITLE 2 THANATIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE EXPORT SYSTEM PROTEIN LPTA; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: THANATIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: LPTA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CHINAVIA UBICA; SOURCE 9 ORGANISM_TAXID: 1497372; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LPTA, THANATIN, ANTIBIOTIC, ANTIBIOTIC-LIPID TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.HUYNH,A.KIBROM,B.DONALD,P.ZHOU REVDAT 1 19-JUL-23 8GAK 0 JRNL AUTH K.HUYNH,A.KIBROM,B.R.DONALD,P.ZHOU JRNL TITL DISCOVERY, CHARACTERIZATION, AND REDESIGN OF POTENT JRNL TITL 2 ANTIMICROBIAL THANATIN ORTHOLOGS FROM CHINAVIA UBICA AND JRNL TITL 3 MURGANTIA HISTRIONICA TARGETING E. COLI LPTA. JRNL REF J STRUCT BIOL X V. 8 00091 2023 JRNL REFN ESSN 2590-1524 JRNL PMID 37416832 JRNL DOI 10.1016/J.YJSBX.2023.100091 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 34274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8600 - 4.3500 1.00 2927 154 0.1850 0.2358 REMARK 3 2 4.3500 - 3.4500 1.00 2762 145 0.1739 0.1886 REMARK 3 3 3.4500 - 3.0200 1.00 2754 144 0.1972 0.2413 REMARK 3 4 3.0200 - 2.7400 1.00 2728 144 0.2117 0.2513 REMARK 3 5 2.7400 - 2.5400 1.00 2705 141 0.2118 0.2773 REMARK 3 6 2.5400 - 2.3900 1.00 2695 141 0.2361 0.3247 REMARK 3 7 2.3900 - 2.2700 1.00 2684 142 0.2030 0.2464 REMARK 3 8 2.2700 - 2.1700 1.00 2695 143 0.2133 0.2463 REMARK 3 9 2.1700 - 2.0900 0.99 2675 139 0.2107 0.2459 REMARK 3 10 2.0900 - 2.0200 0.99 2667 138 0.2212 0.2664 REMARK 3 11 2.0200 - 1.9600 0.99 2643 141 0.2414 0.2817 REMARK 3 12 1.9600 - 1.9000 0.99 2629 138 0.3082 0.3397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.219 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.669 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2281 REMARK 3 ANGLE : 0.892 3092 REMARK 3 CHIRALITY : 0.068 355 REMARK 3 PLANARITY : 0.007 414 REMARK 3 DIHEDRAL : 5.247 317 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 28 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4077 20.6000 27.2167 REMARK 3 T TENSOR REMARK 3 T11: 0.2719 T22: 0.2976 REMARK 3 T33: 0.3221 T12: 0.0005 REMARK 3 T13: 0.0108 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.8312 L22: 2.4739 REMARK 3 L33: 7.6378 L12: 0.5133 REMARK 3 L13: 1.9533 L23: 1.4664 REMARK 3 S TENSOR REMARK 3 S11: 0.1006 S12: -0.1246 S13: -0.1500 REMARK 3 S21: 0.3090 S22: 0.0129 S23: -0.1140 REMARK 3 S31: 0.1331 S32: -0.1808 S33: -0.0889 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 47 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5063 24.6584 32.6280 REMARK 3 T TENSOR REMARK 3 T11: 0.3517 T22: 0.2751 REMARK 3 T33: 0.2646 T12: -0.0583 REMARK 3 T13: 0.0077 T23: 0.0471 REMARK 3 L TENSOR REMARK 3 L11: 3.8336 L22: 6.0017 REMARK 3 L33: 9.7882 L12: 0.1096 REMARK 3 L13: 1.5385 L23: 2.1502 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: -0.2496 S13: 0.2690 REMARK 3 S21: 0.5396 S22: -0.0028 S23: 0.1025 REMARK 3 S31: -0.5830 S32: -0.2729 S33: 0.0368 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 63 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5264 18.1227 22.4451 REMARK 3 T TENSOR REMARK 3 T11: 0.3359 T22: 0.3694 REMARK 3 T33: 0.3177 T12: -0.0288 REMARK 3 T13: -0.0077 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.2361 L22: 9.2559 REMARK 3 L33: 2.3081 L12: 3.7159 REMARK 3 L13: 1.8153 L23: 4.5120 REMARK 3 S TENSOR REMARK 3 S11: 0.7425 S12: -0.3241 S13: -0.9110 REMARK 3 S21: 0.4980 S22: -0.0373 S23: -0.5847 REMARK 3 S31: 0.9161 S32: 0.6328 S33: -0.4846 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 71 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5478 30.6644 28.4738 REMARK 3 T TENSOR REMARK 3 T11: 0.7149 T22: 0.2888 REMARK 3 T33: 0.3304 T12: 0.0125 REMARK 3 T13: -0.0781 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 7.8737 L22: 6.3541 REMARK 3 L33: 8.5750 L12: -3.0333 REMARK 3 L13: -0.9974 L23: 1.2864 REMARK 3 S TENSOR REMARK 3 S11: 0.2290 S12: 0.3641 S13: 0.5335 REMARK 3 S21: 0.0195 S22: -0.3025 S23: 0.1771 REMARK 3 S31: -2.0177 S32: -0.7655 S33: 0.1585 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 90 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9124 18.3510 14.2098 REMARK 3 T TENSOR REMARK 3 T11: 0.2572 T22: 0.3810 REMARK 3 T33: 0.3252 T12: -0.0440 REMARK 3 T13: -0.0236 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 5.0198 L22: 4.4122 REMARK 3 L33: 3.3752 L12: 1.4298 REMARK 3 L13: 0.3276 L23: 1.3489 REMARK 3 S TENSOR REMARK 3 S11: 0.0603 S12: 0.1952 S13: -0.2249 REMARK 3 S21: 0.1947 S22: -0.0401 S23: -0.2662 REMARK 3 S31: -0.1892 S32: 0.5928 S33: -0.0276 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 111 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5613 30.1904 20.6695 REMARK 3 T TENSOR REMARK 3 T11: 0.7249 T22: 0.3451 REMARK 3 T33: 0.4140 T12: -0.0892 REMARK 3 T13: -0.0758 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 3.0970 L22: 2.5893 REMARK 3 L33: 7.1596 L12: 1.1884 REMARK 3 L13: -0.7105 L23: 0.6455 REMARK 3 S TENSOR REMARK 3 S11: 0.2840 S12: 0.7976 S13: 0.7466 REMARK 3 S21: -0.0452 S22: -0.3847 S23: -0.3328 REMARK 3 S31: -1.6210 S32: 0.3836 S33: 0.0954 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 119 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5682 16.1890 12.7871 REMARK 3 T TENSOR REMARK 3 T11: 0.2776 T22: 0.4642 REMARK 3 T33: 0.3284 T12: -0.1697 REMARK 3 T13: -0.0108 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.4928 L22: 4.6111 REMARK 3 L33: 2.8530 L12: -1.8058 REMARK 3 L13: 0.2662 L23: 0.1050 REMARK 3 S TENSOR REMARK 3 S11: 0.1173 S12: 0.0375 S13: -0.0475 REMARK 3 S21: 0.2430 S22: -0.1263 S23: 0.1468 REMARK 3 S31: -0.1151 S32: 0.1209 S33: -0.0162 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 142 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8795 -0.3653 -1.3819 REMARK 3 T TENSOR REMARK 3 T11: 0.4977 T22: 0.4585 REMARK 3 T33: 0.3761 T12: 0.0315 REMARK 3 T13: -0.0644 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 7.1270 L22: 3.9694 REMARK 3 L33: 5.4832 L12: 3.4460 REMARK 3 L13: -4.0495 L23: -3.9209 REMARK 3 S TENSOR REMARK 3 S11: 0.6521 S12: -0.6050 S13: -0.0803 REMARK 3 S21: -0.2816 S22: -0.5922 S23: 0.1870 REMARK 3 S31: 0.0775 S32: 0.6406 S33: 0.0061 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1836 26.5468 23.1038 REMARK 3 T TENSOR REMARK 3 T11: 0.6109 T22: 0.6665 REMARK 3 T33: 0.4754 T12: 0.2554 REMARK 3 T13: 0.0325 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.7334 L22: 4.6116 REMARK 3 L33: 5.9607 L12: 3.2359 REMARK 3 L13: 3.8358 L23: 5.2095 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: 0.0703 S13: 1.1586 REMARK 3 S21: -0.5370 S22: -0.4407 S23: 0.4986 REMARK 3 S31: -2.3133 S32: -1.7140 S33: 0.0742 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3012 16.6978 35.2491 REMARK 3 T TENSOR REMARK 3 T11: 0.5668 T22: 0.5073 REMARK 3 T33: 0.3216 T12: 0.0323 REMARK 3 T13: 0.0309 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 8.9683 L22: 3.2605 REMARK 3 L33: 4.9702 L12: -3.0589 REMARK 3 L13: 3.4578 L23: -3.9253 REMARK 3 S TENSOR REMARK 3 S11: -0.3889 S12: -0.3447 S13: -0.4780 REMARK 3 S21: 1.1588 S22: 0.3076 S23: 0.1860 REMARK 3 S31: -0.0360 S32: -1.0799 S33: 0.1032 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7958 3.7095 5.0581 REMARK 3 T TENSOR REMARK 3 T11: 0.3116 T22: 0.5296 REMARK 3 T33: 0.4074 T12: 0.0325 REMARK 3 T13: 0.0585 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 5.9968 L22: 1.7942 REMARK 3 L33: 8.1411 L12: -3.0948 REMARK 3 L13: 6.9708 L23: -3.7250 REMARK 3 S TENSOR REMARK 3 S11: 0.3491 S12: 0.1097 S13: 0.4106 REMARK 3 S21: -0.1553 S22: -0.1289 S23: -0.0790 REMARK 3 S31: 0.0457 S32: 0.1689 S33: -0.0727 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5105 4.6029 25.1008 REMARK 3 T TENSOR REMARK 3 T11: 0.3119 T22: 0.3991 REMARK 3 T33: 0.3770 T12: 0.0031 REMARK 3 T13: 0.0078 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.8188 L22: 5.5295 REMARK 3 L33: 2.1949 L12: -1.7627 REMARK 3 L13: 0.7500 L23: 1.9493 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: -0.0583 S13: 0.2948 REMARK 3 S21: 0.4059 S22: -0.0871 S23: -0.1292 REMARK 3 S31: -0.6693 S32: 0.1248 S33: -0.0008 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1831 -0.7657 24.9344 REMARK 3 T TENSOR REMARK 3 T11: 0.3987 T22: 0.2869 REMARK 3 T33: 0.3243 T12: 0.0320 REMARK 3 T13: -0.0757 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 6.3786 L22: 2.5621 REMARK 3 L33: 7.2446 L12: 0.3808 REMARK 3 L13: 0.1081 L23: -2.0136 REMARK 3 S TENSOR REMARK 3 S11: 0.1416 S12: -0.3220 S13: -0.6823 REMARK 3 S21: -0.2187 S22: 0.2773 S23: -0.3173 REMARK 3 S31: 1.0478 S32: 0.4967 S33: -0.3836 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7838 6.9107 16.9263 REMARK 3 T TENSOR REMARK 3 T11: 0.2836 T22: 0.4070 REMARK 3 T33: 0.3602 T12: 0.0130 REMARK 3 T13: -0.0214 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 4.3419 L22: 9.2165 REMARK 3 L33: 5.9666 L12: 5.7423 REMARK 3 L13: -5.0564 L23: -7.1094 REMARK 3 S TENSOR REMARK 3 S11: 0.1942 S12: -0.5032 S13: 0.5169 REMARK 3 S21: 0.5339 S22: 0.0792 S23: 0.3570 REMARK 3 S31: -1.0226 S32: -0.2114 S33: -0.3324 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9260 -6.7002 19.2789 REMARK 3 T TENSOR REMARK 3 T11: 0.5734 T22: 0.3038 REMARK 3 T33: 0.5090 T12: 0.0243 REMARK 3 T13: -0.1340 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 8.7560 L22: 6.9086 REMARK 3 L33: 2.8115 L12: -1.8726 REMARK 3 L13: -1.9903 L23: 2.4679 REMARK 3 S TENSOR REMARK 3 S11: 0.1565 S12: -0.3104 S13: -1.0137 REMARK 3 S21: 0.3477 S22: 0.1321 S23: -0.4070 REMARK 3 S31: 1.2382 S32: 0.1180 S33: -0.2080 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5522 7.4427 11.0941 REMARK 3 T TENSOR REMARK 3 T11: 0.2665 T22: 0.4386 REMARK 3 T33: 0.3804 T12: -0.0329 REMARK 3 T13: 0.0042 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 3.7383 L22: 1.3791 REMARK 3 L33: 9.4229 L12: -0.8639 REMARK 3 L13: -0.4022 L23: -1.8148 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.1555 S13: -0.1252 REMARK 3 S21: -0.0269 S22: 0.0039 S23: 0.0602 REMARK 3 S31: 0.2440 S32: -0.7908 S33: -0.1200 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3626 -5.2062 14.3150 REMARK 3 T TENSOR REMARK 3 T11: 0.6440 T22: 0.4679 REMARK 3 T33: 0.4692 T12: -0.0757 REMARK 3 T13: -0.0849 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 4.2657 L22: 7.7995 REMARK 3 L33: 4.1057 L12: -2.3385 REMARK 3 L13: -4.1848 L23: 2.5242 REMARK 3 S TENSOR REMARK 3 S11: 0.3783 S12: 0.4990 S13: -0.8942 REMARK 3 S21: -0.2644 S22: -0.3043 S23: 0.0574 REMARK 3 S31: 1.1297 S32: -0.6155 S33: 0.0090 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9292 9.7743 11.2429 REMARK 3 T TENSOR REMARK 3 T11: 0.2602 T22: 0.5376 REMARK 3 T33: 0.3439 T12: -0.1780 REMARK 3 T13: -0.0195 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 2.3911 L22: 7.8105 REMARK 3 L33: 2.3936 L12: -2.5847 REMARK 3 L13: 0.0880 L23: -0.6950 REMARK 3 S TENSOR REMARK 3 S11: 0.2241 S12: 0.1001 S13: -0.0314 REMARK 3 S21: -0.1365 S22: -0.2430 S23: -0.0988 REMARK 3 S31: 0.1307 S32: 0.0053 S33: -0.0409 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4748 29.4136 3.1248 REMARK 3 T TENSOR REMARK 3 T11: 0.4692 T22: 0.6089 REMARK 3 T33: 0.4505 T12: 0.1463 REMARK 3 T13: 0.0203 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 5.0520 L22: 7.2316 REMARK 3 L33: 8.1883 L12: -5.8689 REMARK 3 L13: 6.4178 L23: -6.6802 REMARK 3 S TENSOR REMARK 3 S11: 0.8432 S12: 0.6652 S13: -0.1598 REMARK 3 S21: -0.1903 S22: -0.3928 S23: 0.8175 REMARK 3 S31: -0.1329 S32: -0.0297 S33: -0.3711 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7284 -2.9665 9.8742 REMARK 3 T TENSOR REMARK 3 T11: 0.6908 T22: 0.5172 REMARK 3 T33: 0.5155 T12: 0.3316 REMARK 3 T13: -0.0233 T23: -0.1529 REMARK 3 L TENSOR REMARK 3 L11: 6.1969 L22: 7.9914 REMARK 3 L33: 8.1017 L12: 3.3665 REMARK 3 L13: -2.6975 L23: 5.0463 REMARK 3 S TENSOR REMARK 3 S11: 0.5484 S12: 0.8482 S13: -1.7052 REMARK 3 S21: -1.6557 S22: -0.0590 S23: -0.9050 REMARK 3 S31: -0.0429 S32: 0.4422 S33: -0.4817 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9436 6.6646 23.8918 REMARK 3 T TENSOR REMARK 3 T11: 0.3564 T22: 0.3855 REMARK 3 T33: 0.3890 T12: 0.0410 REMARK 3 T13: -0.0305 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 5.8410 L22: 9.1474 REMARK 3 L33: 5.8645 L12: 0.5164 REMARK 3 L13: 0.7116 L23: 4.1002 REMARK 3 S TENSOR REMARK 3 S11: 0.3449 S12: 0.4667 S13: 0.1673 REMARK 3 S21: 0.2463 S22: -0.1501 S23: -0.9408 REMARK 3 S31: 0.4524 S32: 0.5860 S33: -0.1504 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000270139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34382 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.025 M TRIS PH 8.5, 100 MM NACL, 0.05 REMARK 280 M MES PH 5.8, 30% MPD, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.75500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.04000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.04000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 156 REMARK 465 GLY A 157 REMARK 465 LYS A 158 REMARK 465 ARG A 159 REMARK 465 ASP C 155 REMARK 465 LYS C 156 REMARK 465 GLY C 157 REMARK 465 LYS C 158 REMARK 465 ARG C 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 45 CD1 CD2 REMARK 470 LYS A 91 CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ASP A 155 CG OD1 OD2 REMARK 470 SER B 3 OG REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 LYS B 14 CD CE NZ REMARK 470 LEU C 45 CD1 CD2 REMARK 470 GLU C 80 CG CD OE1 OE2 REMARK 470 LYS C 91 CE NZ REMARK 470 LYS C 137 CD CE NZ REMARK 470 LEU C 144 CD1 CD2 REMARK 470 MET C 150 SD CE REMARK 470 SER D 3 OG REMARK 470 LYS D 4 CG CD CE NZ REMARK 470 LYS D 14 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN C 148 81.72 -151.95 REMARK 500 SER D 3 -107.14 -95.01 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8GAK A 28 159 UNP A0A6D0DFJ5_ECOLX DBREF2 8GAK A A0A6D0DFJ5 28 159 DBREF 8GAK B 2 21 PDB 8GAK 8GAK 2 21 DBREF1 8GAK C 28 159 UNP A0A6D0DFJ5_ECOLX DBREF2 8GAK C A0A6D0DFJ5 28 159 DBREF 8GAK D 2 21 PDB 8GAK 8GAK 2 21 SEQRES 1 A 132 VAL THR GLY ASP THR ASP GLN PRO ILE HIS ILE GLU SER SEQRES 2 A 132 ASP GLN GLN SER LEU ASP MET GLN GLY ASN VAL VAL THR SEQRES 3 A 132 PHE THR GLY ASN VAL ILE VAL THR GLN GLY THR ILE LYS SEQRES 4 A 132 ILE ASN ALA ASP LYS VAL VAL VAL THR ARG PRO GLY GLY SEQRES 5 A 132 GLU GLN GLY LYS GLU VAL ILE ASP GLY TYR GLY LYS PRO SEQRES 6 A 132 ALA THR PHE TYR GLN MET GLN ASP ASN GLY LYS PRO VAL SEQRES 7 A 132 GLU GLY HIS ALA SER GLN MET HIS TYR GLU LEU ALA LYS SEQRES 8 A 132 ASP PHE VAL VAL LEU THR GLY ASN ALA TYR LEU GLN GLN SEQRES 9 A 132 VAL ASP SER ASN ILE LYS GLY ASP LYS ILE THR TYR LEU SEQRES 10 A 132 VAL LYS GLU GLN LYS MET GLN ALA PHE SER ASP LYS GLY SEQRES 11 A 132 LYS ARG SEQRES 1 B 20 GLY SER LYS PRO VAL PRO ILE ILE ALA CYS ASN ARG LYS SEQRES 2 B 20 THR GLY LYS CYS THR ARG ILE SEQRES 1 C 132 VAL THR GLY ASP THR ASP GLN PRO ILE HIS ILE GLU SER SEQRES 2 C 132 ASP GLN GLN SER LEU ASP MET GLN GLY ASN VAL VAL THR SEQRES 3 C 132 PHE THR GLY ASN VAL ILE VAL THR GLN GLY THR ILE LYS SEQRES 4 C 132 ILE ASN ALA ASP LYS VAL VAL VAL THR ARG PRO GLY GLY SEQRES 5 C 132 GLU GLN GLY LYS GLU VAL ILE ASP GLY TYR GLY LYS PRO SEQRES 6 C 132 ALA THR PHE TYR GLN MET GLN ASP ASN GLY LYS PRO VAL SEQRES 7 C 132 GLU GLY HIS ALA SER GLN MET HIS TYR GLU LEU ALA LYS SEQRES 8 C 132 ASP PHE VAL VAL LEU THR GLY ASN ALA TYR LEU GLN GLN SEQRES 9 C 132 VAL ASP SER ASN ILE LYS GLY ASP LYS ILE THR TYR LEU SEQRES 10 C 132 VAL LYS GLU GLN LYS MET GLN ALA PHE SER ASP LYS GLY SEQRES 11 C 132 LYS ARG SEQRES 1 D 20 GLY SER LYS PRO VAL PRO ILE ILE ALA CYS ASN ARG LYS SEQRES 2 D 20 THR GLY LYS CYS THR ARG ILE FORMUL 5 HOH *139(H2 O) HELIX 1 AA1 GLY A 30 GLN A 34 5 5 HELIX 2 AA2 PRO A 77 GLU A 80 5 4 HELIX 3 AA3 GLY C 30 GLN C 34 5 5 HELIX 4 AA4 PRO C 77 GLU C 80 5 4 SHEET 1 AA112 GLN A 42 LEU A 45 0 SHEET 2 AA112 VAL A 51 GLN A 62 -1 O THR A 53 N SER A 44 SHEET 3 AA112 ILE A 65 THR A 75 -1 O VAL A 72 N PHE A 54 SHEET 4 AA112 VAL A 85 MET A 98 -1 O ASP A 87 N VAL A 73 SHEET 5 AA112 PRO A 104 GLU A 115 -1 O VAL A 105 N GLN A 97 SHEET 6 AA112 PHE A 120 LEU A 144 -1 O GLN A 130 N GLU A 106 SHEET 7 AA112 PHE C 120 LEU C 144 -1 O ILE C 141 N LEU A 123 SHEET 8 AA112 PRO C 104 GLU C 115 -1 N HIS C 113 O VAL C 122 SHEET 9 AA112 VAL C 85 MET C 98 -1 N GLY C 88 O MET C 112 SHEET 10 AA112 ILE C 65 THR C 75 -1 N VAL C 73 O ASP C 87 SHEET 11 AA112 VAL C 51 GLN C 62 -1 N PHE C 54 O VAL C 72 SHEET 12 AA112 GLN C 42 ASP C 46 -1 N ASP C 46 O VAL C 51 SHEET 1 AA216 CYS B 18 ARG B 20 0 SHEET 2 AA216 ILE B 8 ASN B 12 -1 N ALA B 10 O THR B 19 SHEET 3 AA216 ILE A 36 SER A 40 1 N ILE A 38 O CYS B 11 SHEET 4 AA216 VAL A 51 GLN A 62 -1 O THR A 61 N HIS A 37 SHEET 5 AA216 ILE A 65 THR A 75 -1 O VAL A 72 N PHE A 54 SHEET 6 AA216 VAL A 85 MET A 98 -1 O ASP A 87 N VAL A 73 SHEET 7 AA216 PRO A 104 GLU A 115 -1 O VAL A 105 N GLN A 97 SHEET 8 AA216 PHE A 120 LEU A 144 -1 O GLN A 130 N GLU A 106 SHEET 9 AA216 PHE C 120 LEU C 144 -1 O ILE C 141 N LEU A 123 SHEET 10 AA216 PRO C 104 GLU C 115 -1 N HIS C 113 O VAL C 122 SHEET 11 AA216 VAL C 85 MET C 98 -1 N GLY C 88 O MET C 112 SHEET 12 AA216 ILE C 65 THR C 75 -1 N VAL C 73 O ASP C 87 SHEET 13 AA216 VAL C 51 GLN C 62 -1 N PHE C 54 O VAL C 72 SHEET 14 AA216 ILE C 36 SER C 40 -1 N HIS C 37 O THR C 61 SHEET 15 AA216 ILE D 8 ASN D 12 1 O CYS D 11 N ILE C 38 SHEET 16 AA216 CYS D 18 ARG D 20 -1 O THR D 19 N ALA D 10 SSBOND 1 CYS B 11 CYS B 18 1555 1555 2.07 SSBOND 2 CYS D 11 CYS D 18 1555 1555 2.05 CISPEP 1 LYS A 91 PRO A 92 0 -0.08 CISPEP 2 LYS C 91 PRO C 92 0 -2.48 CRYST1 45.510 62.130 150.080 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021973 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006663 0.00000