HEADER ANTIBIOTIC/LIPID TRANSPORT 23-FEB-23 8GAL TITLE CRYSTAL STRUCTURE OF THE E. COLI LPTA IN COMPLEX WITH MURGANTIA TITLE 2 HISTRIONICA THANATIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE EXPORT SYSTEM PROTEIN LPTA; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: THANATIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: LPTA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MURGANTIA HISTRIONICA; SOURCE 9 ORGANISM_TAXID: 460024; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LPTA, THANATIN, ANTIBIOTIC, ANTIBIOTIC-LIPID TRANSPORT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.KIBROM,K.HUYNH,B.DONALD,P.ZHOU REVDAT 1 19-JUL-23 8GAL 0 JRNL AUTH K.HUYNH,A.KIBROM,B.R.DONALD,P.ZHOU JRNL TITL DISCOVERY, CHARACTERIZATION, AND REDESIGN OF POTENT JRNL TITL 2 ANTIMICROBIAL THANATIN ORTHOLOGS FROM CHINAVIA UBICA AND JRNL TITL 3 MURGANTIA HISTRIONICA TARGETING E. COLI LPTA. JRNL REF J STRUCT BIOL X V. 8 00091 2023 JRNL REFN ESSN 2590-1524 JRNL PMID 37416832 JRNL DOI 10.1016/J.YJSBX.2023.100091 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 39030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6200 - 4.3400 0.95 2775 148 0.1631 0.1703 REMARK 3 2 4.3400 - 3.4400 0.96 2645 138 0.1514 0.1752 REMARK 3 3 3.4400 - 3.0100 0.97 2637 139 0.1803 0.1994 REMARK 3 4 3.0100 - 2.7300 0.98 2673 140 0.1892 0.2224 REMARK 3 5 2.7300 - 2.5400 0.98 2640 138 0.1849 0.2357 REMARK 3 6 2.5400 - 2.3900 0.99 2666 140 0.1977 0.2390 REMARK 3 7 2.3900 - 2.2700 0.98 2647 139 0.1855 0.2273 REMARK 3 8 2.2700 - 2.1700 0.98 2612 136 0.1891 0.2524 REMARK 3 9 2.1700 - 2.0900 0.98 2629 138 0.2002 0.2605 REMARK 3 10 2.0900 - 2.0100 0.98 2651 139 0.2238 0.2843 REMARK 3 11 2.0100 - 1.9500 0.99 2616 138 0.2493 0.3186 REMARK 3 12 1.9500 - 1.8900 0.99 2615 138 0.2235 0.2841 REMARK 3 13 1.8900 - 1.8400 0.99 2645 136 0.2474 0.3080 REMARK 3 14 1.8400 - 1.8000 0.98 2635 137 0.2707 0.3242 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.224 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.456 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2311 REMARK 3 ANGLE : 1.369 3134 REMARK 3 CHIRALITY : 0.098 356 REMARK 3 PLANARITY : 0.010 419 REMARK 3 DIHEDRAL : 5.644 318 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7754 3.7385 4.3258 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.4371 REMARK 3 T33: 0.2655 T12: 0.0389 REMARK 3 T13: 0.0250 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 7.8287 L22: 3.8401 REMARK 3 L33: 9.7674 L12: -1.6143 REMARK 3 L13: 7.7213 L23: -3.9035 REMARK 3 S TENSOR REMARK 3 S11: 0.2144 S12: 0.5273 S13: 0.0329 REMARK 3 S21: -0.3151 S22: 0.1762 S23: -0.1877 REMARK 3 S31: 0.3386 S32: 0.9316 S33: -0.3032 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6638 3.5393 24.4782 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.2187 REMARK 3 T33: 0.2509 T12: -0.0369 REMARK 3 T13: 0.0155 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 7.0621 L22: 5.5150 REMARK 3 L33: 2.4381 L12: -3.5012 REMARK 3 L13: 3.3086 L23: 0.1740 REMARK 3 S TENSOR REMARK 3 S11: -0.1239 S12: 0.1084 S13: 0.1220 REMARK 3 S21: 0.4480 S22: -0.0591 S23: -0.0339 REMARK 3 S31: -0.4986 S32: 0.0523 S33: 0.1680 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2357 -1.4756 23.2986 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.2332 REMARK 3 T33: 0.2078 T12: 0.0028 REMARK 3 T13: -0.0298 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 4.4377 L22: 3.6729 REMARK 3 L33: 7.6544 L12: -0.4504 REMARK 3 L13: 0.8229 L23: -0.5964 REMARK 3 S TENSOR REMARK 3 S11: 0.1484 S12: 0.1250 S13: -0.3724 REMARK 3 S21: 0.1525 S22: 0.1654 S23: -0.0891 REMARK 3 S31: 0.5152 S32: 0.3040 S33: -0.2603 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3903 -0.8532 18.5497 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.2142 REMARK 3 T33: 0.2351 T12: -0.0497 REMARK 3 T13: -0.0151 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 4.4716 L22: 2.9814 REMARK 3 L33: 7.2419 L12: -0.1113 REMARK 3 L13: 0.2435 L23: -1.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.1024 S12: 0.0932 S13: -0.3444 REMARK 3 S21: 0.3606 S22: 0.0799 S23: 0.1442 REMARK 3 S31: 0.3739 S32: -0.2521 S33: -0.1719 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2392 -7.5085 16.0971 REMARK 3 T TENSOR REMARK 3 T11: 0.4707 T22: 0.4165 REMARK 3 T33: 0.3691 T12: 0.0267 REMARK 3 T13: -0.1200 T23: -0.0742 REMARK 3 L TENSOR REMARK 3 L11: 4.3243 L22: 8.6814 REMARK 3 L33: 8.9460 L12: -4.4053 REMARK 3 L13: -5.6348 L23: 3.3576 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: 0.2374 S13: -0.7697 REMARK 3 S21: -0.2044 S22: 0.0866 S23: 0.0165 REMARK 3 S31: 1.1793 S32: 0.2922 S33: -0.0835 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3291 7.7332 10.1167 REMARK 3 T TENSOR REMARK 3 T11: 0.2109 T22: 0.3907 REMARK 3 T33: 0.2759 T12: 0.0230 REMARK 3 T13: 0.0084 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 2.3417 L22: 2.4393 REMARK 3 L33: 2.3739 L12: 0.8255 REMARK 3 L13: -1.4827 L23: -2.2779 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: 0.2973 S13: 0.0640 REMARK 3 S21: -0.0259 S22: 0.0955 S23: 0.1028 REMARK 3 S31: -0.0926 S32: -0.8614 S33: -0.1641 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8985 -4.7219 12.0385 REMARK 3 T TENSOR REMARK 3 T11: 0.3267 T22: 0.2624 REMARK 3 T33: 0.3056 T12: -0.0546 REMARK 3 T13: -0.0782 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 5.5902 L22: 3.2055 REMARK 3 L33: 6.1717 L12: 0.9653 REMARK 3 L13: -1.3521 L23: -0.3478 REMARK 3 S TENSOR REMARK 3 S11: 0.1782 S12: 0.2364 S13: -0.2548 REMARK 3 S21: -0.1972 S22: 0.1684 S23: 0.1979 REMARK 3 S31: 0.5827 S32: -0.4859 S33: -0.2984 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1640 4.0175 13.3429 REMARK 3 T TENSOR REMARK 3 T11: 0.2676 T22: 0.5735 REMARK 3 T33: 0.4361 T12: 0.0257 REMARK 3 T13: 0.0407 T23: 0.0929 REMARK 3 L TENSOR REMARK 3 L11: 1.3378 L22: 4.3950 REMARK 3 L33: 6.6561 L12: 1.1094 REMARK 3 L13: -1.2887 L23: -5.4040 REMARK 3 S TENSOR REMARK 3 S11: 0.3185 S12: 0.0059 S13: -0.3481 REMARK 3 S21: 0.1896 S22: 0.3318 S23: 0.9360 REMARK 3 S31: -0.3826 S32: -0.9612 S33: -0.6082 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9713 24.2921 9.5088 REMARK 3 T TENSOR REMARK 3 T11: 0.2825 T22: 0.5022 REMARK 3 T33: 0.3085 T12: -0.1109 REMARK 3 T13: 0.0118 T23: 0.0812 REMARK 3 L TENSOR REMARK 3 L11: 3.2053 L22: 9.6490 REMARK 3 L33: 5.8790 L12: 0.0758 REMARK 3 L13: -0.7449 L23: 4.8506 REMARK 3 S TENSOR REMARK 3 S11: 0.3002 S12: 0.0860 S13: 0.1176 REMARK 3 S21: -0.3538 S22: -0.3223 S23: -0.5783 REMARK 3 S31: -0.5922 S32: 0.7933 S33: 0.0329 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0524 29.3204 3.3498 REMARK 3 T TENSOR REMARK 3 T11: 0.3034 T22: 0.4818 REMARK 3 T33: 0.3309 T12: 0.1182 REMARK 3 T13: 0.0451 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 3.8442 L22: 5.8914 REMARK 3 L33: 9.5357 L12: -2.8809 REMARK 3 L13: 4.4608 L23: -4.9713 REMARK 3 S TENSOR REMARK 3 S11: 0.4938 S12: 0.1593 S13: -0.3444 REMARK 3 S21: -0.1648 S22: -0.0049 S23: 0.7392 REMARK 3 S31: -0.2134 S32: -0.2992 S33: -0.4323 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7627 0.0243 14.1397 REMARK 3 T TENSOR REMARK 3 T11: 0.3569 T22: 0.3753 REMARK 3 T33: 0.2802 T12: 0.1425 REMARK 3 T13: -0.0323 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 6.9831 L22: 9.2993 REMARK 3 L33: 4.8170 L12: 1.0672 REMARK 3 L13: 0.3550 L23: 6.6304 REMARK 3 S TENSOR REMARK 3 S11: 0.4931 S12: 0.3503 S13: -0.3531 REMARK 3 S21: -0.6727 S22: -0.3238 S23: -0.1851 REMARK 3 S31: -0.2759 S32: 0.1950 S33: -0.1430 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5004 5.6660 24.4603 REMARK 3 T TENSOR REMARK 3 T11: 0.2299 T22: 0.2663 REMARK 3 T33: 0.2757 T12: 0.0207 REMARK 3 T13: -0.0313 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 6.6349 L22: 7.8309 REMARK 3 L33: 5.8767 L12: 0.5392 REMARK 3 L13: 1.6487 L23: 0.6783 REMARK 3 S TENSOR REMARK 3 S11: 0.4180 S12: 0.3592 S13: -0.1888 REMARK 3 S21: 0.1740 S22: -0.1634 S23: -0.5424 REMARK 3 S31: 0.1198 S32: 0.5904 S33: -0.2497 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 28 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2420 18.8779 27.8464 REMARK 3 T TENSOR REMARK 3 T11: 0.2774 T22: 0.1835 REMARK 3 T33: 0.3055 T12: -0.0218 REMARK 3 T13: 0.0095 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 2.1228 L22: 1.8446 REMARK 3 L33: 5.6200 L12: 0.2466 REMARK 3 L13: 0.2958 L23: 1.4266 REMARK 3 S TENSOR REMARK 3 S11: 0.2063 S12: 0.0857 S13: -0.0833 REMARK 3 S21: 0.3526 S22: -0.0211 S23: -0.0103 REMARK 3 S31: 0.2242 S32: -0.0825 S33: -0.1653 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 46 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0534 24.3077 23.7562 REMARK 3 T TENSOR REMARK 3 T11: 0.2655 T22: 0.1946 REMARK 3 T33: 0.2621 T12: -0.0429 REMARK 3 T13: -0.0210 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.1786 L22: 1.1330 REMARK 3 L33: 6.1910 L12: 0.0475 REMARK 3 L13: 0.1778 L23: 1.0287 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: 0.1193 S13: 0.0758 REMARK 3 S21: 0.0057 S22: -0.0118 S23: -0.0639 REMARK 3 S31: -0.5602 S32: 0.1882 S33: -0.0219 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 125 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0111 10.6282 11.0965 REMARK 3 T TENSOR REMARK 3 T11: 0.2333 T22: 0.5259 REMARK 3 T33: 0.3753 T12: -0.0723 REMARK 3 T13: -0.0154 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4328 L22: 7.4749 REMARK 3 L33: 1.0375 L12: -1.7324 REMARK 3 L13: 0.0267 L23: 0.7233 REMARK 3 S TENSOR REMARK 3 S11: 0.2521 S12: 0.0813 S13: -0.1939 REMARK 3 S21: -0.2552 S22: -0.2723 S23: 0.5342 REMARK 3 S31: 0.1082 S32: -0.2370 S33: 0.0141 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 142 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5866 -0.0176 -3.0139 REMARK 3 T TENSOR REMARK 3 T11: 0.3572 T22: 0.4779 REMARK 3 T33: 0.2935 T12: 0.1069 REMARK 3 T13: -0.0259 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 2.1065 L22: 3.6599 REMARK 3 L33: 5.1508 L12: 1.2802 REMARK 3 L13: -1.0495 L23: -0.8266 REMARK 3 S TENSOR REMARK 3 S11: 0.0821 S12: -0.0660 S13: -0.0019 REMARK 3 S21: -0.4442 S22: -0.2729 S23: -0.1729 REMARK 3 S31: 0.5371 S32: 0.8647 S33: 0.1705 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 4 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0062 21.1497 28.5158 REMARK 3 T TENSOR REMARK 3 T11: 0.3375 T22: 0.2914 REMARK 3 T33: 0.3611 T12: 0.0653 REMARK 3 T13: 0.0790 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.0137 L22: 8.4272 REMARK 3 L33: 9.8261 L12: -0.9759 REMARK 3 L13: 1.8450 L23: 0.3934 REMARK 3 S TENSOR REMARK 3 S11: 0.4251 S12: 0.0591 S13: 0.0014 REMARK 3 S21: -0.1285 S22: -0.3750 S23: 0.6251 REMARK 3 S31: -0.1257 S32: -0.5378 S33: -0.0670 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8082 14.8449 37.3826 REMARK 3 T TENSOR REMARK 3 T11: 0.5214 T22: 0.3535 REMARK 3 T33: 0.3684 T12: -0.0058 REMARK 3 T13: 0.0680 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 7.8914 L22: 8.4389 REMARK 3 L33: 8.2545 L12: -5.1880 REMARK 3 L13: 2.2556 L23: -2.5621 REMARK 3 S TENSOR REMARK 3 S11: -0.0744 S12: -0.8970 S13: -0.0684 REMARK 3 S21: 0.9880 S22: 0.4038 S23: 0.1679 REMARK 3 S31: -0.5402 S32: -0.6630 S33: -0.3975 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000270224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39095 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM TRIS PH 8.5, 100 MM NACL, 0.0475 REMARK 280 M SODIUM CITRATE PH 5.6, 9.5% ISOPROPANOL, 9.5% PEG 4000, 2.5% REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.80000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.56000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.23500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.56000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.80000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.23500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 156 REMARK 465 GLY A 157 REMARK 465 LYS A 158 REMARK 465 ARG A 159 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 LYS C 156 REMARK 465 GLY C 157 REMARK 465 LYS C 158 REMARK 465 ARG C 159 REMARK 465 GLY D 2 REMARK 465 SER D 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 47 CG SD CE REMARK 470 LYS A 91 CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 GLN A 148 CG CD OE1 NE2 REMARK 470 LYS A 149 CD CE NZ REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 LYS C 91 CE NZ REMARK 470 ASP C 119 CG OD1 OD2 REMARK 470 ASP C 155 CG OD1 OD2 REMARK 470 LYS D 4 CG CD CE NZ REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 337 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH C 347 DISTANCE = 6.18 ANGSTROMS DBREF1 8GAL A 28 159 UNP A0A6D0DFJ5_ECOLX DBREF2 8GAL A A0A6D0DFJ5 28 159 DBREF 8GAL B 2 21 PDB 8GAL 8GAL 2 21 DBREF1 8GAL C 28 159 UNP A0A6D0DFJ5_ECOLX DBREF2 8GAL C A0A6D0DFJ5 28 159 DBREF 8GAL D 2 21 PDB 8GAL 8GAL 2 21 SEQRES 1 A 132 VAL THR GLY ASP THR ASP GLN PRO ILE HIS ILE GLU SER SEQRES 2 A 132 ASP GLN GLN SER LEU ASP MET GLN GLY ASN VAL VAL THR SEQRES 3 A 132 PHE THR GLY ASN VAL ILE VAL THR GLN GLY THR ILE LYS SEQRES 4 A 132 ILE ASN ALA ASP LYS VAL VAL VAL THR ARG PRO GLY GLY SEQRES 5 A 132 GLU GLN GLY LYS GLU VAL ILE ASP GLY TYR GLY LYS PRO SEQRES 6 A 132 ALA THR PHE TYR GLN MET GLN ASP ASN GLY LYS PRO VAL SEQRES 7 A 132 GLU GLY HIS ALA SER GLN MET HIS TYR GLU LEU ALA LYS SEQRES 8 A 132 ASP PHE VAL VAL LEU THR GLY ASN ALA TYR LEU GLN GLN SEQRES 9 A 132 VAL ASP SER ASN ILE LYS GLY ASP LYS ILE THR TYR LEU SEQRES 10 A 132 VAL LYS GLU GLN LYS MET GLN ALA PHE SER ASP LYS GLY SEQRES 11 A 132 LYS ARG SEQRES 1 B 20 GLY SER LYS PRO VAL PRO ILE ILE ALA CYS ASN ARG LYS SEQRES 2 B 20 THR GLY LYS CYS ARG ARG ILE SEQRES 1 C 132 VAL THR GLY ASP THR ASP GLN PRO ILE HIS ILE GLU SER SEQRES 2 C 132 ASP GLN GLN SER LEU ASP MET GLN GLY ASN VAL VAL THR SEQRES 3 C 132 PHE THR GLY ASN VAL ILE VAL THR GLN GLY THR ILE LYS SEQRES 4 C 132 ILE ASN ALA ASP LYS VAL VAL VAL THR ARG PRO GLY GLY SEQRES 5 C 132 GLU GLN GLY LYS GLU VAL ILE ASP GLY TYR GLY LYS PRO SEQRES 6 C 132 ALA THR PHE TYR GLN MET GLN ASP ASN GLY LYS PRO VAL SEQRES 7 C 132 GLU GLY HIS ALA SER GLN MET HIS TYR GLU LEU ALA LYS SEQRES 8 C 132 ASP PHE VAL VAL LEU THR GLY ASN ALA TYR LEU GLN GLN SEQRES 9 C 132 VAL ASP SER ASN ILE LYS GLY ASP LYS ILE THR TYR LEU SEQRES 10 C 132 VAL LYS GLU GLN LYS MET GLN ALA PHE SER ASP LYS GLY SEQRES 11 C 132 LYS ARG SEQRES 1 D 20 GLY SER LYS PRO VAL PRO ILE ILE ALA CYS ASN ARG LYS SEQRES 2 D 20 THR GLY LYS CYS ARG ARG ILE FORMUL 5 HOH *334(H2 O) HELIX 1 AA1 GLY A 30 GLN A 34 5 5 HELIX 2 AA2 PRO A 77 GLU A 80 5 4 HELIX 3 AA3 GLY C 30 GLN C 34 5 5 HELIX 4 AA4 PRO C 77 GLU C 80 5 4 SHEET 1 AA112 GLN A 42 LEU A 45 0 SHEET 2 AA112 VAL A 51 GLN A 62 -1 O THR A 53 N SER A 44 SHEET 3 AA112 ILE A 65 THR A 75 -1 O VAL A 72 N PHE A 54 SHEET 4 AA112 VAL A 85 MET A 98 -1 O VAL A 85 N THR A 75 SHEET 5 AA112 PRO A 104 GLU A 115 -1 O VAL A 105 N GLN A 97 SHEET 6 AA112 PHE A 120 LEU A 144 -1 O GLN A 130 N GLU A 106 SHEET 7 AA112 PHE C 120 LEU C 144 -1 O LEU C 123 N ILE A 141 SHEET 8 AA112 PRO C 104 GLU C 115 -1 N GLU C 106 O GLN C 130 SHEET 9 AA112 VAL C 85 MET C 98 -1 N ILE C 86 O TYR C 114 SHEET 10 AA112 ILE C 65 THR C 75 -1 N LYS C 71 O TYR C 89 SHEET 11 AA112 VAL C 51 GLN C 62 -1 N PHE C 54 O VAL C 72 SHEET 12 AA112 GLN C 42 LEU C 45 -1 N SER C 44 O THR C 53 SHEET 1 AA216 CYS B 18 ILE B 21 0 SHEET 2 AA216 ILE B 8 ASN B 12 -1 N ALA B 10 O ARG B 19 SHEET 3 AA216 ILE A 36 SER A 40 1 N ILE A 36 O ILE B 9 SHEET 4 AA216 VAL A 51 GLN A 62 -1 O THR A 61 N HIS A 37 SHEET 5 AA216 ILE A 65 THR A 75 -1 O VAL A 72 N PHE A 54 SHEET 6 AA216 VAL A 85 MET A 98 -1 O VAL A 85 N THR A 75 SHEET 7 AA216 PRO A 104 GLU A 115 -1 O VAL A 105 N GLN A 97 SHEET 8 AA216 PHE A 120 LEU A 144 -1 O GLN A 130 N GLU A 106 SHEET 9 AA216 PHE C 120 LEU C 144 -1 O LEU C 123 N ILE A 141 SHEET 10 AA216 PRO C 104 GLU C 115 -1 N GLU C 106 O GLN C 130 SHEET 11 AA216 VAL C 85 MET C 98 -1 N ILE C 86 O TYR C 114 SHEET 12 AA216 ILE C 65 THR C 75 -1 N LYS C 71 O TYR C 89 SHEET 13 AA216 VAL C 51 GLN C 62 -1 N PHE C 54 O VAL C 72 SHEET 14 AA216 ILE C 36 SER C 40 -1 N HIS C 37 O THR C 61 SHEET 15 AA216 ILE D 8 ASN D 12 1 O CYS D 11 N ILE C 38 SHEET 16 AA216 CYS D 18 ILE D 21 -1 O ILE D 21 N ILE D 8 SSBOND 1 CYS B 11 CYS B 18 1555 1555 2.14 SSBOND 2 CYS D 11 CYS D 18 1555 1555 2.08 CISPEP 1 LYS A 91 PRO A 92 0 -2.36 CISPEP 2 LYS C 91 PRO C 92 0 1.51 CRYST1 45.600 62.470 147.120 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006797 0.00000