HEADER IMMUNE SYSTEM 28-FEB-23 8GC0 TITLE CRYSTAL STRUCTURE OF PC39-50L, AN ANTI-HIV BROADLY NEUTRALIZING TITLE 2 ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PC39-50L FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PC39-50L FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIBODY, BROADLY NEUTRALIZING, HIV-1, V3 GLYCAN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.MURRELL,O.OMORODION,I.A.WILSON REVDAT 2 12-JUL-23 8GC0 1 JRNL REVDAT 1 07-JUN-23 8GC0 0 JRNL AUTH C.JOYCE,S.MURRELL,B.MURRELL,O.OMORODION,L.S.VER,N.CARRICO, JRNL AUTH 2 R.BASTIDAS,R.NEDELLEC,M.BICK,J.WOEHL,F.ZHAO,A.BURNS, JRNL AUTH 3 S.BARMAN,M.APPEL,A.RAMOS,L.WICKRAMASINGHE,K.EREN, JRNL AUTH 4 T.VOLLBRECHT,D.M.SMITH,S.L.KOSAKOVSKY POND,R.MCBRIDE, JRNL AUTH 5 C.WORTH,F.BATISTA,D.SOK,P.POIGNARD,B.BRINEY,I.A.WILSON, JRNL AUTH 6 E.LANDAIS,D.R.BURTON JRNL TITL ANTIGEN PRESSURE FROM TWO FOUNDER VIRUSES INDUCES MULTIPLE JRNL TITL 2 INSERTIONS AT A SINGLE ANTIBODY POSITION TO GENERATE BROADLY JRNL TITL 3 NEUTRALIZING HIV ANTIBODIES. JRNL REF PLOS PATHOG. V. 19 11416 2023 JRNL REFN ESSN 1553-7374 JRNL PMID 37384622 JRNL DOI 10.1371/JOURNAL.PPAT.1011416 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 16475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7100 - 4.4100 1.00 2710 128 0.1752 0.2055 REMARK 3 2 4.4100 - 3.5000 1.00 2665 138 0.1780 0.2131 REMARK 3 3 3.5000 - 3.0600 0.99 2648 112 0.2149 0.2464 REMARK 3 4 3.0600 - 2.7800 0.99 2627 165 0.2581 0.3094 REMARK 3 5 2.7800 - 2.5800 0.98 2606 130 0.2827 0.3221 REMARK 3 6 2.5800 - 2.4300 0.92 2411 135 0.3075 0.3533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.347 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3541 REMARK 3 ANGLE : 0.538 4828 REMARK 3 CHIRALITY : 0.044 539 REMARK 3 PLANARITY : 0.005 621 REMARK 3 DIHEDRAL : 15.146 1269 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1524 -24.1159 28.2718 REMARK 3 T TENSOR REMARK 3 T11: 0.3436 T22: 0.2325 REMARK 3 T33: 0.2630 T12: 0.0210 REMARK 3 T13: -0.0530 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.7066 L22: 3.8524 REMARK 3 L33: 3.3015 L12: 0.1480 REMARK 3 L13: -0.7344 L23: 0.4315 REMARK 3 S TENSOR REMARK 3 S11: -0.1963 S12: -0.0512 S13: -0.1726 REMARK 3 S21: 0.0243 S22: 0.1338 S23: 0.0030 REMARK 3 S31: -0.1711 S32: -0.1192 S33: 0.0789 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 64 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2449 -26.1883 26.0810 REMARK 3 T TENSOR REMARK 3 T11: 0.3348 T22: 0.2081 REMARK 3 T33: 0.3407 T12: -0.0050 REMARK 3 T13: -0.0549 T23: 0.0406 REMARK 3 L TENSOR REMARK 3 L11: 2.0128 L22: 4.2626 REMARK 3 L33: 3.8322 L12: -1.9715 REMARK 3 L13: -1.1083 L23: 1.7341 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: -0.1141 S13: -0.1866 REMARK 3 S21: -0.0251 S22: -0.0761 S23: -0.0587 REMARK 3 S31: -0.3943 S32: -0.0607 S33: 0.0767 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 105 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4063 4.5344 27.3460 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.2179 REMARK 3 T33: 0.2785 T12: -0.0053 REMARK 3 T13: 0.0570 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.7911 L22: 3.5524 REMARK 3 L33: 3.0466 L12: -1.6093 REMARK 3 L13: 1.5537 L23: -0.1360 REMARK 3 S TENSOR REMARK 3 S11: -0.0842 S12: -0.0214 S13: -0.1354 REMARK 3 S21: 0.6017 S22: 0.0195 S23: 0.0904 REMARK 3 S31: -0.0854 S32: 0.3108 S33: 0.0658 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 135 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4868 4.8764 22.3588 REMARK 3 T TENSOR REMARK 3 T11: 0.1611 T22: 0.1819 REMARK 3 T33: 0.2258 T12: -0.0161 REMARK 3 T13: -0.0122 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 2.4037 L22: 4.7379 REMARK 3 L33: 2.9703 L12: -0.0767 REMARK 3 L13: 0.0749 L23: -1.0476 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: -0.0368 S13: -0.2674 REMARK 3 S21: 0.2028 S22: -0.0563 S23: 0.2497 REMARK 3 S31: 0.0398 S32: 0.0607 S33: 0.0072 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 191 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2848 8.0720 26.3539 REMARK 3 T TENSOR REMARK 3 T11: 0.2100 T22: 0.2497 REMARK 3 T33: 0.4039 T12: 0.0274 REMARK 3 T13: 0.0804 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 4.9406 L22: 5.6794 REMARK 3 L33: 4.2556 L12: -1.8957 REMARK 3 L13: 1.7043 L23: -2.1272 REMARK 3 S TENSOR REMARK 3 S11: -0.1137 S12: -0.4999 S13: -0.1926 REMARK 3 S21: 0.4321 S22: 0.3623 S23: 1.1029 REMARK 3 S31: -0.2984 S32: -0.3032 S33: -0.2052 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6039 -9.0216 3.7649 REMARK 3 T TENSOR REMARK 3 T11: 0.3597 T22: 0.2459 REMARK 3 T33: 0.3100 T12: -0.0301 REMARK 3 T13: 0.0454 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 3.8686 L22: 6.2700 REMARK 3 L33: 4.6494 L12: -1.3267 REMARK 3 L13: 2.9834 L23: -2.4113 REMARK 3 S TENSOR REMARK 3 S11: 0.1027 S12: 0.3208 S13: -0.0863 REMARK 3 S21: -0.4686 S22: -0.4420 S23: -0.2494 REMARK 3 S31: 0.0659 S32: 0.4964 S33: 0.3900 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 19 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8266 -14.5279 7.4275 REMARK 3 T TENSOR REMARK 3 T11: 0.4278 T22: 0.3654 REMARK 3 T33: 0.6152 T12: 0.0269 REMARK 3 T13: 0.2168 T23: 0.1081 REMARK 3 L TENSOR REMARK 3 L11: 5.0736 L22: 6.4316 REMARK 3 L33: 3.9683 L12: -1.9019 REMARK 3 L13: 3.8524 L23: -2.5773 REMARK 3 S TENSOR REMARK 3 S11: 0.3480 S12: 0.6221 S13: 0.6299 REMARK 3 S21: -0.1291 S22: -0.5118 S23: -1.3071 REMARK 3 S31: -0.3671 S32: 0.7681 S33: 0.7635 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 30 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8864 -16.7493 7.5534 REMARK 3 T TENSOR REMARK 3 T11: 0.3451 T22: 0.2609 REMARK 3 T33: 0.2285 T12: 0.0432 REMARK 3 T13: 0.0199 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.5782 L22: 5.1110 REMARK 3 L33: 1.9545 L12: -1.5877 REMARK 3 L13: 0.7432 L23: -2.4436 REMARK 3 S TENSOR REMARK 3 S11: 0.1779 S12: 0.1915 S13: -0.2903 REMARK 3 S21: -0.5716 S22: -0.2205 S23: 0.0054 REMARK 3 S31: 0.1254 S32: 0.1917 S33: 0.0567 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5156 12.9012 20.1308 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: 0.1657 REMARK 3 T33: 0.2886 T12: -0.0032 REMARK 3 T13: -0.0143 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.4194 L22: 3.6199 REMARK 3 L33: 7.5437 L12: 0.5730 REMARK 3 L13: 1.2506 L23: 1.7845 REMARK 3 S TENSOR REMARK 3 S11: 0.0668 S12: -0.0041 S13: 0.0458 REMARK 3 S21: 0.2079 S22: 0.0721 S23: -0.1719 REMARK 3 S31: 0.3276 S32: -0.0580 S33: -0.1227 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 151 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3752 12.7606 23.6330 REMARK 3 T TENSOR REMARK 3 T11: 0.2109 T22: 0.3052 REMARK 3 T33: 0.3093 T12: 0.0057 REMARK 3 T13: -0.0189 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.3159 L22: 6.8597 REMARK 3 L33: 2.1203 L12: -0.0661 REMARK 3 L13: -0.2059 L23: 1.7526 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: -0.3890 S13: 0.2386 REMARK 3 S21: 0.5054 S22: -0.2548 S23: -0.1664 REMARK 3 S31: 0.0782 S32: -0.1337 S33: 0.1515 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 164 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2550 11.9388 19.5531 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.1793 REMARK 3 T33: 0.3054 T12: -0.0043 REMARK 3 T13: -0.0157 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 1.6507 L22: 4.1306 REMARK 3 L33: 6.3688 L12: 1.2688 REMARK 3 L13: 2.1778 L23: 3.5933 REMARK 3 S TENSOR REMARK 3 S11: 0.1214 S12: 0.0037 S13: -0.1706 REMARK 3 S21: 0.0630 S22: 0.1875 S23: -0.2699 REMARK 3 S31: 0.1787 S32: -0.0024 S33: -0.2615 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 199 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6712 21.7985 15.3723 REMARK 3 T TENSOR REMARK 3 T11: 0.4594 T22: 0.0474 REMARK 3 T33: 0.5086 T12: -0.0898 REMARK 3 T13: 0.0776 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.7793 L22: 5.5170 REMARK 3 L33: 9.9300 L12: 1.7727 REMARK 3 L13: 2.0078 L23: 5.0338 REMARK 3 S TENSOR REMARK 3 S11: -0.6260 S12: -0.4339 S13: -0.0695 REMARK 3 S21: -1.2931 S22: 0.1928 S23: 0.1271 REMARK 3 S31: -1.2645 S32: -0.5837 S33: 0.0846 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16654 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17000 REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.61000 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085 M SODIUM ACETATE PH 4.6, 0.17 M REMARK 280 AMMONIUM ACETATE, 15% GLYCEROL, 25.5% PEG 4000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.60950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP H 217 REMARK 465 GLU L 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS H 43 -169.91 -100.74 REMARK 500 LYS H 64 -131.41 51.45 REMARK 500 ASP H 144 60.59 61.83 REMARK 500 ASP L 151 -107.99 54.18 REMARK 500 LYS L 190 -53.52 -123.49 REMARK 500 GLU L 213 -167.98 -79.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8GBV RELATED DB: PDB REMARK 900 RELATED ID: 8GBW RELATED DB: PDB REMARK 900 RELATED ID: 8GBX RELATED DB: PDB REMARK 900 RELATED ID: 8GBY RELATED DB: PDB REMARK 900 RELATED ID: 8GBZ RELATED DB: PDB REMARK 900 RELATED ID: 8GC1 RELATED DB: PDB DBREF 8GC0 H 1 217 PDB 8GC0 8GC0 1 217 DBREF 8GC0 L 1 214 PDB 8GC0 8GC0 1 214 SEQRES 1 H 236 GLN VAL GLN LEU GLN GLN TRP GLY ALA GLY LEU LEU ASN SEQRES 2 H 236 SER SER GLU THR LEU SER LEU THR CYS ALA ILE TYR GLY SEQRES 3 H 236 GLU SER PHE THR GLY SER TRP ASN ASP GLN LEU TRP ASN SEQRES 4 H 236 TRP ILE ARG GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE SEQRES 5 H 236 GLY GLU ILE ASP HIS SER GLU ASN ARG ARG TYR GLN PRO SEQRES 6 H 236 SER LEU LYS GLY ARG VAL THR ILE SER VAL ASP ARG SER SEQRES 7 H 236 LYS ASN GLN ILE SER LEU LYS MET ARG ALA VAL SER VAL SEQRES 8 H 236 ALA ASP THR ALA VAL TYR TYR CYS VAL ARG GLY ARG ARG SEQRES 9 H 236 ALA THR GLN TRP TRP ALA VAL GLU PRO PRO ALA ASN TYR SEQRES 10 H 236 GLY PHE ASP VAL TRP GLY GLN GLY THR PRO VAL SER VAL SEQRES 11 H 236 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 236 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 236 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 236 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 236 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 236 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 236 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 236 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 19 H 236 CYS ASP SEQRES 1 L 216 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 216 SER PRO GLY ASP ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 216 GLN THR ILE ALA SER THR TYR VAL ALA TRP TYR GLN GLN SEQRES 4 L 216 LYS PRO GLY GLN ALA PRO ARG LEU LEU LEU HIS GLN GLY SEQRES 5 L 216 TYR ASN ARG ALA THR GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 216 SER GLY SER GLY THR ALA TYR SER LEU THR ILE SER SER SEQRES 7 L 216 LEU GLU PRO ASP ASP PHE ALA VAL TYR TYR CYS GLN HIS SEQRES 8 L 216 PHE GLY THR SER PRO PRO TYR SER PHE GLY GLN GLY THR SEQRES 9 L 216 LYS VAL ASP ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 216 LYS SER PHE ASN ARG GLY GLU CYS HET NAG H 301 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG C8 H15 N O6 FORMUL 4 HOH *82(H2 O) HELIX 1 AA1 PRO H 61 LYS H 64 5 4 HELIX 2 AA2 SER H 83 THR H 87 5 5 HELIX 3 AA3 SER H 156 ALA H 158 5 3 HELIX 4 AA4 SER H 187 THR H 191 5 5 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 ALA L 29 THR L 31 5 3 HELIX 7 AA7 GLU L 79 PHE L 83 5 5 HELIX 8 AA8 SER L 121 LYS L 126 1 6 HELIX 9 AA9 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 4 GLN H 3 ALA H 9 0 SHEET 2 AA1 4 LEU H 18 TYR H 25 -1 O TYR H 25 N GLN H 3 SHEET 3 AA1 4 GLN H 77 MET H 82 -1 O ILE H 78 N CYS H 22 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O GLN H 77 SHEET 1 AA2 6 LEU H 11 LEU H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O SER H 110 N LEU H 12 SHEET 3 AA2 6 ALA H 88 ARG H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 GLN H 32 GLN H 39 -1 N LEU H 33 O GLY H 95 SHEET 5 AA2 6 GLU H 46 ASP H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 ARG H 57 TYR H 59 -1 O ARG H 58 N GLU H 50 SHEET 1 AA3 4 LEU H 11 LEU H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O SER H 110 N LEU H 12 SHEET 3 AA3 4 ALA H 88 ARG H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 VAL H 102 TRP H 103 -1 O VAL H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O VAL H 184 N ALA H 136 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O THR H 205 N HIS H 200 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ALA L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA8 6 VAL L 85 HIS L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 VAL L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA8 6 ARG L 45 HIS L 49 -1 O ARG L 45 N GLN L 37 SHEET 6 AA8 6 ASN L 53 ARG L 54 -1 O ASN L 53 N HIS L 49 SHEET 1 AA9 4 THR L 10 LEU L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA9 4 VAL L 85 HIS L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 SER L 97 PHE L 98 -1 O SER L 97 N HIS L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O PHE L 209 N TYR L 192 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 3 CYS H 216 CYS L 214 1555 1555 2.02 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN H 13 C1 NAG H 301 1555 1555 1.45 CISPEP 1 PHE H 146 PRO H 147 0 -3.77 CISPEP 2 GLU H 148 PRO H 149 0 -5.22 CISPEP 3 SER L 7 PRO L 8 0 -4.19 CISPEP 4 PRO L 95 PRO L 95A 0 2.06 CISPEP 5 TYR L 140 PRO L 141 0 2.35 CRYST1 39.810 69.219 81.643 90.00 94.28 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025119 0.000000 0.001878 0.00000 SCALE2 0.000000 0.014447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012283 0.00000