HEADER CELL ADHESION 01-MAR-23 8GCD TITLE FULL LENGTH INTEGRIN ALPHAIIBBETA3 IN INACTIVE STATE CAVEAT 8GCD NAG C 2 HAS WRONG CHIRALITY AT ATOM C1 NAG E 1 HAS WRONG CAVEAT 2 8GCD CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN ALPHA-IIB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GPALPHA IIB,GPIIB,PLATELET MEMBRANE GLYCOPROTEIN IIB; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: INTEGRIN BETA-3; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: PLATELET MEMBRANE GLYCOPROTEIN IIIA,GPIIIA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS INTEGRIN, CELL ADHESION EXPDTA ELECTRON MICROSCOPY AUTHOR T.HUO,H.WU,Z.WANG REVDAT 2 17-APR-24 8GCD 1 JRNL REVDAT 1 06-MAR-24 8GCD 0 JRNL AUTH T.HUO,H.WU,Z.MOUSSA,M.SEN,V.DALTON,Z.WANG JRNL TITL FULL-LENGTH ALPHA IIB BETA 3 CRYO-EM STRUCTURE REVEALS JRNL TITL 2 INTACT INTEGRIN INITIATE-ACTIVATION INTRINSIC ARCHITECTURE. JRNL REF STRUCTURE 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 38579706 JRNL DOI 10.1016/J.STR.2024.03.006 REMARK 2 REMARK 2 RESOLUTION. 2.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.970 REMARK 3 NUMBER OF PARTICLES : 168938 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8GCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272584. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : THE EXTRACELLULAR DOMAIN OF REMARK 245 INTEGRIN ALPHAIIBBETA3 IN REMARK 245 INACTIVE STATE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -30 REMARK 465 ALA A -29 REMARK 465 ARG A -28 REMARK 465 ALA A -27 REMARK 465 LEU A -26 REMARK 465 CYS A -25 REMARK 465 PRO A -24 REMARK 465 LEU A -23 REMARK 465 GLN A -22 REMARK 465 ALA A -21 REMARK 465 LEU A -20 REMARK 465 TRP A -19 REMARK 465 LEU A -18 REMARK 465 LEU A -17 REMARK 465 GLU A -16 REMARK 465 TRP A -15 REMARK 465 VAL A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 LEU A -11 REMARK 465 LEU A -10 REMARK 465 GLY A -9 REMARK 465 PRO A -8 REMARK 465 CYS A -7 REMARK 465 ALA A -6 REMARK 465 ALA A -5 REMARK 465 PRO A -4 REMARK 465 PRO A -3 REMARK 465 ALA A -2 REMARK 465 TRP A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 764 REMARK 465 GLU A 765 REMARK 465 GLY A 766 REMARK 465 GLU A 767 REMARK 465 ARG A 768 REMARK 465 GLU A 769 REMARK 465 GLN A 770 REMARK 465 ASN A 771 REMARK 465 SER A 772 REMARK 465 LEU A 773 REMARK 465 ASP A 774 REMARK 465 TRP A 839 REMARK 465 GLY A 840 REMARK 465 LEU A 841 REMARK 465 PRO A 842 REMARK 465 ILE A 843 REMARK 465 PRO A 844 REMARK 465 SER A 845 REMARK 465 PRO A 846 REMARK 465 SER A 847 REMARK 465 PRO A 848 REMARK 465 ILE A 849 REMARK 465 HIS A 850 REMARK 465 PRO A 851 REMARK 465 ALA A 852 REMARK 465 HIS A 853 REMARK 465 HIS A 854 REMARK 465 LYS A 855 REMARK 465 ARG A 856 REMARK 465 ASP A 857 REMARK 465 ARG A 858 REMARK 465 ARG A 859 REMARK 465 GLN A 860 REMARK 465 ILE A 861 REMARK 465 PHE A 862 REMARK 465 LEU A 863 REMARK 465 PRO A 864 REMARK 465 GLU A 865 REMARK 465 PRO A 866 REMARK 465 GLU A 867 REMARK 465 GLN A 868 REMARK 465 PRO A 869 REMARK 465 SER A 870 REMARK 465 ARG A 871 REMARK 465 LEU A 872 REMARK 465 GLN A 873 REMARK 465 ALA A 986 REMARK 465 MET A 987 REMARK 465 TRP A 988 REMARK 465 LYS A 989 REMARK 465 VAL A 990 REMARK 465 GLY A 991 REMARK 465 PHE A 992 REMARK 465 PHE A 993 REMARK 465 LYS A 994 REMARK 465 ARG A 995 REMARK 465 ASN A 996 REMARK 465 ARG A 997 REMARK 465 PRO A 998 REMARK 465 PRO A 999 REMARK 465 LEU A 1000 REMARK 465 GLU A 1001 REMARK 465 GLU A 1002 REMARK 465 ASP A 1003 REMARK 465 ASP A 1004 REMARK 465 GLU A 1005 REMARK 465 GLU A 1006 REMARK 465 GLY A 1007 REMARK 465 GLU A 1008 REMARK 465 MET B -25 REMARK 465 ARG B -24 REMARK 465 ALA B -23 REMARK 465 ARG B -22 REMARK 465 PRO B -21 REMARK 465 ARG B -20 REMARK 465 PRO B -19 REMARK 465 ARG B -18 REMARK 465 PRO B -17 REMARK 465 LEU B -16 REMARK 465 TRP B -15 REMARK 465 ALA B -14 REMARK 465 THR B -13 REMARK 465 VAL B -12 REMARK 465 LEU B -11 REMARK 465 ALA B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 ALA B -7 REMARK 465 LEU B -6 REMARK 465 ALA B -5 REMARK 465 GLY B -4 REMARK 465 VAL B -3 REMARK 465 GLY B -2 REMARK 465 VAL B -1 REMARK 465 GLY B 0 REMARK 465 GLY B 75 REMARK 465 ASP B 76 REMARK 465 SER B 77 REMARK 465 SER B 78 REMARK 465 ASP B 477 REMARK 465 TYR B 478 REMARK 465 ARG B 479 REMARK 465 PRO B 480 REMARK 465 SER B 481 REMARK 465 GLN B 482 REMARK 465 PRO B 688 REMARK 465 LYS B 689 REMARK 465 GLY B 690 REMARK 465 PRO B 691 REMARK 465 ASP B 692 REMARK 465 LEU B 713 REMARK 465 ILE B 714 REMARK 465 TRP B 715 REMARK 465 LYS B 716 REMARK 465 LEU B 717 REMARK 465 LEU B 718 REMARK 465 ILE B 719 REMARK 465 THR B 720 REMARK 465 ILE B 721 REMARK 465 HIS B 722 REMARK 465 ASP B 723 REMARK 465 ARG B 724 REMARK 465 LYS B 725 REMARK 465 GLU B 726 REMARK 465 PHE B 727 REMARK 465 ALA B 728 REMARK 465 LYS B 729 REMARK 465 PHE B 730 REMARK 465 GLU B 731 REMARK 465 GLU B 732 REMARK 465 GLU B 733 REMARK 465 ARG B 734 REMARK 465 ALA B 735 REMARK 465 ARG B 736 REMARK 465 ALA B 737 REMARK 465 LYS B 738 REMARK 465 TRP B 739 REMARK 465 ASP B 740 REMARK 465 THR B 741 REMARK 465 ALA B 742 REMARK 465 ASN B 743 REMARK 465 ASN B 744 REMARK 465 PRO B 745 REMARK 465 LEU B 746 REMARK 465 TYR B 747 REMARK 465 LYS B 748 REMARK 465 GLU B 749 REMARK 465 ALA B 750 REMARK 465 THR B 751 REMARK 465 SER B 752 REMARK 465 THR B 753 REMARK 465 PHE B 754 REMARK 465 THR B 755 REMARK 465 ASN B 756 REMARK 465 ILE B 757 REMARK 465 THR B 758 REMARK 465 TYR B 759 REMARK 465 ARG B 760 REMARK 465 GLY B 761 REMARK 465 THR B 762 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 817 ND2 ASN A 833 1.13 REMARK 500 OD2 ASP A 245 OE2 GLU A 252 1.42 REMARK 500 O CYS A 602 OE2 GLU A 642 1.74 REMARK 500 OE1 GLU B 378 NE ARG B 633 1.80 REMARK 500 OE1 GLU B 378 CZ ARG B 633 1.97 REMARK 500 OD1 ASP A 365 OD1 ASP A 369 2.09 REMARK 500 OH TYR A 288 OD1 ASP B 259 2.15 REMARK 500 OE1 GLN A 197 OH TYR A 253 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 742 C ARG A 743 N 0.179 REMARK 500 ARG A 743 N ARG A 743 CA 0.177 REMARK 500 ARG A 743 CA ARG A 743 C 0.182 REMARK 500 ARG A 743 C ALA A 744 N 0.174 REMARK 500 ALA A 744 N ALA A 744 CA 0.171 REMARK 500 ALA A 744 C GLU A 745 N 0.189 REMARK 500 PRO B 602 N PRO B 602 CA 0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 743 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 743 CA - C - N ANGL. DEV. = 15.8 DEGREES REMARK 500 ALA A 744 C - N - CA ANGL. DEV. = 18.1 DEGREES REMARK 500 ALA A 744 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 ALA A 744 CA - C - N ANGL. DEV. = 15.6 DEGREES REMARK 500 LEU A 956 CA - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 LEU A 956 O - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 CYS B 601 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 CYS B 601 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 PRO B 602 CA - C - O ANGL. DEV. = -22.4 DEGREES REMARK 500 PRO B 602 CA - C - N ANGL. DEV. = 16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 101.41 -30.56 REMARK 500 HIS A 30 51.20 -93.29 REMARK 500 LEU A 43 -137.37 46.33 REMARK 500 SER A 67 134.57 91.90 REMARK 500 ARG A 73 21.56 -145.94 REMARK 500 TRP A 100 -167.72 -124.99 REMARK 500 LYS A 118 -113.95 55.53 REMARK 500 GLU A 123 133.18 74.42 REMARK 500 PRO A 135 175.15 -59.88 REMARK 500 SER A 137 -77.15 69.16 REMARK 500 ALA A 185 75.94 -159.32 REMARK 500 SER A 225 -165.84 -117.18 REMARK 500 SER A 226 33.01 -97.16 REMARK 500 VAL A 325 -61.31 -100.74 REMARK 500 PRO A 412 -176.72 -69.16 REMARK 500 GLU A 577 -167.61 -79.87 REMARK 500 MET A 580 -134.70 57.05 REMARK 500 ALA A 581 72.09 57.50 REMARK 500 LEU A 663 129.06 -174.20 REMARK 500 GLU A 667 -84.94 7.95 REMARK 500 GLU A 745 149.10 170.23 REMARK 500 GLN A 806 36.37 -97.31 REMARK 500 LEU A 816 -148.28 -87.49 REMARK 500 PRO A 820 -123.55 -88.61 REMARK 500 GLN A 821 -11.63 -164.14 REMARK 500 GLN A 825 23.34 -169.51 REMARK 500 PRO A 828 157.72 -47.13 REMARK 500 ASN A 833 56.35 38.61 REMARK 500 LEU A 835 -96.13 -94.12 REMARK 500 LYS A 836 -83.05 -177.29 REMARK 500 VAL A 837 170.49 62.85 REMARK 500 GLN A 893 -70.11 -115.86 REMARK 500 MET A 895 74.89 171.48 REMARK 500 ARG A 900 -102.26 -156.55 REMARK 500 ALA A 901 -177.62 71.77 REMARK 500 MET A 902 -144.81 -171.97 REMARK 500 ARG A 917 64.32 60.79 REMARK 500 PRO A 941 47.63 -91.92 REMARK 500 GLU A 960 -44.42 -165.59 REMARK 500 GLU A 961 -113.16 77.16 REMARK 500 ARG A 962 119.82 178.80 REMARK 500 ALA A 963 -93.57 -119.15 REMARK 500 ILE A 964 113.39 -38.09 REMARK 500 PRO A 965 76.50 -51.15 REMARK 500 ILE A 966 -57.28 -141.62 REMARK 500 PHE B 156 147.03 -173.31 REMARK 500 VAL B 157 -66.65 -125.57 REMARK 500 ASN B 175 75.11 -159.72 REMARK 500 PRO B 176 1.21 -62.04 REMARK 500 HIS B 192 127.02 -38.50 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 959 GLU A 960 -101.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 742 -13.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 243 OE1 REMARK 620 2 GLU A 243 OE2 55.2 REMARK 620 3 ASP A 245 OD1 119.9 66.8 REMARK 620 4 ASP A 245 OD2 152.3 106.0 55.0 REMARK 620 5 ASP A 247 O 79.1 81.0 77.7 120.9 REMARK 620 6 THR A 250 O 65.9 119.8 151.4 133.6 76.2 REMARK 620 7 THR A 250 OG1 139.3 142.0 81.4 68.3 72.0 79.6 REMARK 620 8 GLU A 252 OE1 80.2 86.0 111.9 78.2 159.3 96.7 126.5 REMARK 620 9 GLU A 252 OE2 133.7 123.2 89.7 35.1 145.7 105.5 74.6 54.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 297 OD1 REMARK 620 2 ASN A 299 OD1 83.9 REMARK 620 3 ASP A 301 OD1 74.7 75.7 REMARK 620 4 ARG A 303 O 60.7 142.8 83.6 REMARK 620 5 ASP A 305 OD1 134.3 118.6 145.8 95.7 REMARK 620 6 ASP A 305 OD2 96.6 78.3 153.3 114.6 55.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 365 OD1 REMARK 620 2 ASP A 367 OD1 56.3 REMARK 620 3 ASP A 367 OD2 110.6 54.7 REMARK 620 4 ASP A 369 OD1 51.4 65.7 93.7 REMARK 620 5 ASP A 369 OD2 106.5 89.9 67.9 55.4 REMARK 620 6 TYR A 371 O 69.4 125.4 168.6 77.4 100.9 REMARK 620 7 ASP A 373 OD1 129.0 124.8 95.9 168.9 123.9 92.4 REMARK 620 8 ASP A 373 OD2 77.0 83.4 101.1 128.2 169.0 90.1 55.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 426 OD1 REMARK 620 2 ASP A 428 OD1 77.5 REMARK 620 3 ASN A 430 OD1 68.3 85.2 REMARK 620 4 TYR A 432 O 80.4 152.3 71.2 REMARK 620 5 ASP A 434 OD1 132.0 136.1 132.0 71.5 REMARK 620 6 ASP A 434 OD2 117.1 82.9 165.4 122.3 56.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1105 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 602 O REMARK 620 2 ASP A 605 OD2 99.3 REMARK 620 3 GLU A 642 OE2 40.1 73.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 123 OG REMARK 620 2 GLU B 220 OE2 172.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 123 O REMARK 620 2 ASP B 126 OD1 118.7 REMARK 620 3 ASP B 126 OD2 94.6 55.2 REMARK 620 4 MET B 335 O 170.8 62.1 92.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 158 OD2 REMARK 620 2 ASP B 217 O 162.7 REMARK 620 3 ASP B 217 OD1 103.4 65.3 REMARK 620 4 PRO B 219 O 86.4 83.5 102.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-29931 RELATED DB: EMDB REMARK 900 FULL LENGTH INTEGRIN ALPHAIIBBETA3 IN INACTIVE STATE DBREF 8GCD A -30 1008 UNP P08514 ITA2B_HUMAN 1 1039 DBREF 8GCD B -25 762 UNP P05106 ITB3_HUMAN 1 788 SEQRES 1 A 1039 MET ALA ARG ALA LEU CYS PRO LEU GLN ALA LEU TRP LEU SEQRES 2 A 1039 LEU GLU TRP VAL LEU LEU LEU LEU GLY PRO CYS ALA ALA SEQRES 3 A 1039 PRO PRO ALA TRP ALA LEU ASN LEU ASP PRO VAL GLN LEU SEQRES 4 A 1039 THR PHE TYR ALA GLY PRO ASN GLY SER GLN PHE GLY PHE SEQRES 5 A 1039 SER LEU ASP PHE HIS LYS ASP SER HIS GLY ARG VAL ALA SEQRES 6 A 1039 ILE VAL VAL GLY ALA PRO ARG THR LEU GLY PRO SER GLN SEQRES 7 A 1039 GLU GLU THR GLY GLY VAL PHE LEU CYS PRO TRP ARG ALA SEQRES 8 A 1039 GLU GLY GLY GLN CYS PRO SER LEU LEU PHE ASP LEU ARG SEQRES 9 A 1039 ASP GLU THR ARG ASN VAL GLY SER GLN THR LEU GLN THR SEQRES 10 A 1039 PHE LYS ALA ARG GLN GLY LEU GLY ALA SER VAL VAL SER SEQRES 11 A 1039 TRP SER ASP VAL ILE VAL ALA CYS ALA PRO TRP GLN HIS SEQRES 12 A 1039 TRP ASN VAL LEU GLU LYS THR GLU GLU ALA GLU LYS THR SEQRES 13 A 1039 PRO VAL GLY SER CYS PHE LEU ALA GLN PRO GLU SER GLY SEQRES 14 A 1039 ARG ARG ALA GLU TYR SER PRO CYS ARG GLY ASN THR LEU SEQRES 15 A 1039 SER ARG ILE TYR VAL GLU ASN ASP PHE SER TRP ASP LYS SEQRES 16 A 1039 ARG TYR CYS GLU ALA GLY PHE SER SER VAL VAL THR GLN SEQRES 17 A 1039 ALA GLY GLU LEU VAL LEU GLY ALA PRO GLY GLY TYR TYR SEQRES 18 A 1039 PHE LEU GLY LEU LEU ALA GLN ALA PRO VAL ALA ASP ILE SEQRES 19 A 1039 PHE SER SER TYR ARG PRO GLY ILE LEU LEU TRP HIS VAL SEQRES 20 A 1039 SER SER GLN SER LEU SER PHE ASP SER SER ASN PRO GLU SEQRES 21 A 1039 TYR PHE ASP GLY TYR TRP GLY TYR SER VAL ALA VAL GLY SEQRES 22 A 1039 GLU PHE ASP GLY ASP LEU ASN THR THR GLU TYR VAL VAL SEQRES 23 A 1039 GLY ALA PRO THR TRP SER TRP THR LEU GLY ALA VAL GLU SEQRES 24 A 1039 ILE LEU ASP SER TYR TYR GLN ARG LEU HIS ARG LEU ARG SEQRES 25 A 1039 GLY GLU GLN MET ALA SER TYR PHE GLY HIS SER VAL ALA SEQRES 26 A 1039 VAL THR ASP VAL ASN GLY ASP GLY ARG HIS ASP LEU LEU SEQRES 27 A 1039 VAL GLY ALA PRO LEU TYR MET GLU SER ARG ALA ASP ARG SEQRES 28 A 1039 LYS LEU ALA GLU VAL GLY ARG VAL TYR LEU PHE LEU GLN SEQRES 29 A 1039 PRO ARG GLY PRO HIS ALA LEU GLY ALA PRO SER LEU LEU SEQRES 30 A 1039 LEU THR GLY THR GLN LEU TYR GLY ARG PHE GLY SER ALA SEQRES 31 A 1039 ILE ALA PRO LEU GLY ASP LEU ASP ARG ASP GLY TYR ASN SEQRES 32 A 1039 ASP ILE ALA VAL ALA ALA PRO TYR GLY GLY PRO SER GLY SEQRES 33 A 1039 ARG GLY GLN VAL LEU VAL PHE LEU GLY GLN SER GLU GLY SEQRES 34 A 1039 LEU ARG SER ARG PRO SER GLN VAL LEU ASP SER PRO PHE SEQRES 35 A 1039 PRO THR GLY SER ALA PHE GLY PHE SER LEU ARG GLY ALA SEQRES 36 A 1039 VAL ASP ILE ASP ASP ASN GLY TYR PRO ASP LEU ILE VAL SEQRES 37 A 1039 GLY ALA TYR GLY ALA ASN GLN VAL ALA VAL TYR ARG ALA SEQRES 38 A 1039 GLN PRO VAL VAL LYS ALA SER VAL GLN LEU LEU VAL GLN SEQRES 39 A 1039 ASP SER LEU ASN PRO ALA VAL LYS SER CYS VAL LEU PRO SEQRES 40 A 1039 GLN THR LYS THR PRO VAL SER CYS PHE ASN ILE GLN MET SEQRES 41 A 1039 CYS VAL GLY ALA THR GLY HIS ASN ILE PRO GLN LYS LEU SEQRES 42 A 1039 SER LEU ASN ALA GLU LEU GLN LEU ASP ARG GLN LYS PRO SEQRES 43 A 1039 ARG GLN GLY ARG ARG VAL LEU LEU LEU GLY SER GLN GLN SEQRES 44 A 1039 ALA GLY THR THR LEU ASN LEU ASP LEU GLY GLY LYS HIS SEQRES 45 A 1039 SER PRO ILE CYS HIS THR THR MET ALA PHE LEU ARG ASP SEQRES 46 A 1039 GLU ALA ASP PHE ARG ASP LYS LEU SER PRO ILE VAL LEU SEQRES 47 A 1039 SER LEU ASN VAL SER LEU PRO PRO THR GLU ALA GLY MET SEQRES 48 A 1039 ALA PRO ALA VAL VAL LEU HIS GLY ASP THR HIS VAL GLN SEQRES 49 A 1039 GLU GLN THR ARG ILE VAL LEU ASP CYS GLY GLU ASP ASP SEQRES 50 A 1039 VAL CYS VAL PRO GLN LEU GLN LEU THR ALA SER VAL THR SEQRES 51 A 1039 GLY SER PRO LEU LEU VAL GLY ALA ASP ASN VAL LEU GLU SEQRES 52 A 1039 LEU GLN MET ASP ALA ALA ASN GLU GLY GLU GLY ALA TYR SEQRES 53 A 1039 GLU ALA GLU LEU ALA VAL HIS LEU PRO GLN GLY ALA HIS SEQRES 54 A 1039 TYR MET ARG ALA LEU SER ASN VAL GLU GLY PHE GLU ARG SEQRES 55 A 1039 LEU ILE CYS ASN GLN LYS LYS GLU ASN GLU THR ARG VAL SEQRES 56 A 1039 VAL LEU CYS GLU LEU GLY ASN PRO MET LYS LYS ASN ALA SEQRES 57 A 1039 GLN ILE GLY ILE ALA MET LEU VAL SER VAL GLY ASN LEU SEQRES 58 A 1039 GLU GLU ALA GLY GLU SER VAL SER PHE GLN LEU GLN ILE SEQRES 59 A 1039 ARG SER LYS ASN SER GLN ASN PRO ASN SER LYS ILE VAL SEQRES 60 A 1039 LEU LEU ASP VAL PRO VAL ARG ALA GLU ALA GLN VAL GLU SEQRES 61 A 1039 LEU ARG GLY ASN SER PHE PRO ALA SER LEU VAL VAL ALA SEQRES 62 A 1039 ALA GLU GLU GLY GLU ARG GLU GLN ASN SER LEU ASP SER SEQRES 63 A 1039 TRP GLY PRO LYS VAL GLU HIS THR TYR GLU LEU HIS ASN SEQRES 64 A 1039 ASN GLY PRO GLY THR VAL ASN GLY LEU HIS LEU SER ILE SEQRES 65 A 1039 HIS LEU PRO GLY GLN SER GLN PRO SER ASP LEU LEU TYR SEQRES 66 A 1039 ILE LEU ASP ILE GLN PRO GLN GLY GLY LEU GLN CYS PHE SEQRES 67 A 1039 PRO GLN PRO PRO VAL ASN PRO LEU LYS VAL ASP TRP GLY SEQRES 68 A 1039 LEU PRO ILE PRO SER PRO SER PRO ILE HIS PRO ALA HIS SEQRES 69 A 1039 HIS LYS ARG ASP ARG ARG GLN ILE PHE LEU PRO GLU PRO SEQRES 70 A 1039 GLU GLN PRO SER ARG LEU GLN ASP PRO VAL LEU VAL SER SEQRES 71 A 1039 CYS ASP SER ALA PRO CYS THR VAL VAL GLN CYS ASP LEU SEQRES 72 A 1039 GLN GLU MET ALA ARG GLY GLN ARG ALA MET VAL THR VAL SEQRES 73 A 1039 LEU ALA PHE LEU TRP LEU PRO SER LEU TYR GLN ARG PRO SEQRES 74 A 1039 LEU ASP GLN PHE VAL LEU GLN SER HIS ALA TRP PHE ASN SEQRES 75 A 1039 VAL SER SER LEU PRO TYR ALA VAL PRO PRO LEU SER LEU SEQRES 76 A 1039 PRO ARG GLY GLU ALA GLN VAL TRP THR GLN LEU LEU ARG SEQRES 77 A 1039 ALA LEU GLU GLU ARG ALA ILE PRO ILE TRP TRP VAL LEU SEQRES 78 A 1039 VAL GLY VAL LEU GLY GLY LEU LEU LEU LEU THR ILE LEU SEQRES 79 A 1039 VAL LEU ALA MET TRP LYS VAL GLY PHE PHE LYS ARG ASN SEQRES 80 A 1039 ARG PRO PRO LEU GLU GLU ASP ASP GLU GLU GLY GLU SEQRES 1 B 788 MET ARG ALA ARG PRO ARG PRO ARG PRO LEU TRP ALA THR SEQRES 2 B 788 VAL LEU ALA LEU GLY ALA LEU ALA GLY VAL GLY VAL GLY SEQRES 3 B 788 GLY PRO ASN ILE CYS THR THR ARG GLY VAL SER SER CYS SEQRES 4 B 788 GLN GLN CYS LEU ALA VAL SER PRO MET CYS ALA TRP CYS SEQRES 5 B 788 SER ASP GLU ALA LEU PRO LEU GLY SER PRO ARG CYS ASP SEQRES 6 B 788 LEU LYS GLU ASN LEU LEU LYS ASP ASN CYS ALA PRO GLU SEQRES 7 B 788 SER ILE GLU PHE PRO VAL SER GLU ALA ARG VAL LEU GLU SEQRES 8 B 788 ASP ARG PRO LEU SER ASP LYS GLY SER GLY ASP SER SER SEQRES 9 B 788 GLN VAL THR GLN VAL SER PRO GLN ARG ILE ALA LEU ARG SEQRES 10 B 788 LEU ARG PRO ASP ASP SER LYS ASN PHE SER ILE GLN VAL SEQRES 11 B 788 ARG GLN VAL GLU ASP TYR PRO VAL ASP ILE TYR TYR LEU SEQRES 12 B 788 MET ASP LEU SER TYR SER MET LYS ASP ASP LEU TRP SER SEQRES 13 B 788 ILE GLN ASN LEU GLY THR LYS LEU ALA THR GLN MET ARG SEQRES 14 B 788 LYS LEU THR SER ASN LEU ARG ILE GLY PHE GLY ALA PHE SEQRES 15 B 788 VAL ASP LYS PRO VAL SER PRO TYR MET TYR ILE SER PRO SEQRES 16 B 788 PRO GLU ALA LEU GLU ASN PRO CYS TYR ASP MET LYS THR SEQRES 17 B 788 THR CYS LEU PRO MET PHE GLY TYR LYS HIS VAL LEU THR SEQRES 18 B 788 LEU THR ASP GLN VAL THR ARG PHE ASN GLU GLU VAL LYS SEQRES 19 B 788 LYS GLN SER VAL SER ARG ASN ARG ASP ALA PRO GLU GLY SEQRES 20 B 788 GLY PHE ASP ALA ILE MET GLN ALA THR VAL CYS ASP GLU SEQRES 21 B 788 LYS ILE GLY TRP ARG ASN ASP ALA SER HIS LEU LEU VAL SEQRES 22 B 788 PHE THR THR ASP ALA LYS THR HIS ILE ALA LEU ASP GLY SEQRES 23 B 788 ARG LEU ALA GLY ILE VAL GLN PRO ASN ASP GLY GLN CYS SEQRES 24 B 788 HIS VAL GLY SER ASP ASN HIS TYR SER ALA SER THR THR SEQRES 25 B 788 MET ASP TYR PRO SER LEU GLY LEU MET THR GLU LYS LEU SEQRES 26 B 788 SER GLN LYS ASN ILE ASN LEU ILE PHE ALA VAL THR GLU SEQRES 27 B 788 ASN VAL VAL ASN LEU TYR GLN ASN TYR SER GLU LEU ILE SEQRES 28 B 788 PRO GLY THR THR VAL GLY VAL LEU SER MET ASP SER SER SEQRES 29 B 788 ASN VAL LEU GLN LEU ILE VAL ASP ALA TYR GLY LYS ILE SEQRES 30 B 788 ARG SER LYS VAL GLU LEU GLU VAL ARG ASP LEU PRO GLU SEQRES 31 B 788 GLU LEU SER LEU SER PHE ASN ALA THR CYS LEU ASN ASN SEQRES 32 B 788 GLU VAL ILE PRO GLY LEU LYS SER CYS MET GLY LEU LYS SEQRES 33 B 788 ILE GLY ASP THR VAL SER PHE SER ILE GLU ALA LYS VAL SEQRES 34 B 788 ARG GLY CYS PRO GLN GLU LYS GLU LYS SER PHE THR ILE SEQRES 35 B 788 LYS PRO VAL GLY PHE LYS ASP SER LEU ILE VAL GLN VAL SEQRES 36 B 788 THR PHE ASP CYS ASP CYS ALA CYS GLN ALA GLN ALA GLU SEQRES 37 B 788 PRO ASN SER HIS ARG CYS ASN ASN GLY ASN GLY THR PHE SEQRES 38 B 788 GLU CYS GLY VAL CYS ARG CYS GLY PRO GLY TRP LEU GLY SEQRES 39 B 788 SER GLN CYS GLU CYS SER GLU GLU ASP TYR ARG PRO SER SEQRES 40 B 788 GLN GLN ASP GLU CYS SER PRO ARG GLU GLY GLN PRO VAL SEQRES 41 B 788 CYS SER GLN ARG GLY GLU CYS LEU CYS GLY GLN CYS VAL SEQRES 42 B 788 CYS HIS SER SER ASP PHE GLY LYS ILE THR GLY LYS TYR SEQRES 43 B 788 CYS GLU CYS ASP ASP PHE SER CYS VAL ARG TYR LYS GLY SEQRES 44 B 788 GLU MET CYS SER GLY HIS GLY GLN CYS SER CYS GLY ASP SEQRES 45 B 788 CYS LEU CYS ASP SER ASP TRP THR GLY TYR TYR CYS ASN SEQRES 46 B 788 CYS THR THR ARG THR ASP THR CYS MET SER SER ASN GLY SEQRES 47 B 788 LEU LEU CYS SER GLY ARG GLY LYS CYS GLU CYS GLY SER SEQRES 48 B 788 CYS VAL CYS ILE GLN PRO GLY SER TYR GLY ASP THR CYS SEQRES 49 B 788 GLU LYS CYS PRO THR CYS PRO ASP ALA CYS THR PHE LYS SEQRES 50 B 788 LYS GLU CYS VAL GLU CYS LYS LYS PHE ASP ARG GLY ALA SEQRES 51 B 788 LEU HIS ASP GLU ASN THR CYS ASN ARG TYR CYS ARG ASP SEQRES 52 B 788 GLU ILE GLU SER VAL LYS GLU LEU LYS ASP THR GLY LYS SEQRES 53 B 788 ASP ALA VAL ASN CYS THR TYR LYS ASN GLU ASP ASP CYS SEQRES 54 B 788 VAL VAL ARG PHE GLN TYR TYR GLU ASP SER SER GLY LYS SEQRES 55 B 788 SER ILE LEU TYR VAL VAL GLU GLU PRO GLU CYS PRO LYS SEQRES 56 B 788 GLY PRO ASP ILE LEU VAL VAL LEU LEU SER VAL MET GLY SEQRES 57 B 788 ALA ILE LEU LEU ILE GLY LEU ALA ALA LEU LEU ILE TRP SEQRES 58 B 788 LYS LEU LEU ILE THR ILE HIS ASP ARG LYS GLU PHE ALA SEQRES 59 B 788 LYS PHE GLU GLU GLU ARG ALA ARG ALA LYS TRP ASP THR SEQRES 60 B 788 ALA ASN ASN PRO LEU TYR LYS GLU ALA THR SER THR PHE SEQRES 61 B 788 THR ASN ILE THR TYR ARG GLY THR HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET BMA C 5 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET CA A1101 1 HET CA A1102 1 HET CA A1103 1 HET CA A1104 1 HET CA A1105 1 HET NAG A1106 14 HET NAG A1107 14 HET NAG A1108 14 HET MG B2001 1 HET CA B2002 1 HET CA B2003 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 11(C8 H15 N O6) FORMUL 3 BMA 3(C6 H12 O6) FORMUL 3 MAN C6 H12 O6 FORMUL 7 CA 7(CA 2+) FORMUL 15 MG MG 2+ FORMUL 18 HOH *(H2 O) HELIX 1 AA1 LEU A 151 ASN A 158 1 8 HELIX 2 AA2 GLY A 187 LEU A 192 1 6 HELIX 3 AA3 VAL A 200 TYR A 207 1 8 HELIX 4 AA4 ASN A 227 PHE A 231 5 5 HELIX 5 AA5 THR A 259 LEU A 264 1 6 HELIX 6 AA6 PRO A 515 ARG A 519 5 5 HELIX 7 AA7 ASP A 554 PHE A 558 5 5 HELIX 8 AA8 CYS A 602 ASP A 606 5 5 HELIX 9 AA9 VAL A 666 GLU A 670 5 5 HELIX 10 AB1 LEU A 710 GLY A 714 5 5 HELIX 11 AB2 TRP A 910 TYR A 915 1 6 HELIX 12 AB3 LEU A 970 LEU A 985 1 16 HELIX 13 AB4 SER B 12 SER B 20 1 9 HELIX 14 AB5 LYS B 41 ASP B 47 1 7 HELIX 15 AB6 SER B 121 LYS B 125 5 5 HELIX 16 AB7 ASP B 126 LEU B 134 5 9 HELIX 17 AB8 GLY B 135 ARG B 143 1 9 HELIX 18 AB9 PRO B 169 LEU B 173 5 5 HELIX 19 AC1 VAL B 200 VAL B 207 1 8 HELIX 20 AC2 MET B 227 CYS B 232 1 6 HELIX 21 AC3 CYS B 232 GLY B 237 1 6 HELIX 22 AC4 LEU B 258 ALA B 263 5 6 HELIX 23 AC5 SER B 291 ASN B 303 1 13 HELIX 24 AC6 VAL B 314 GLU B 323 1 10 HELIX 25 AC7 ASN B 339 ARG B 352 1 14 HELIX 26 AC8 CYS B 435 GLN B 440 1 6 HELIX 27 AC9 PRO B 493 GLN B 497 5 5 HELIX 28 AD1 GLU B 534 GLY B 538 5 5 HELIX 29 AD2 ASP B 606 LYS B 611 1 6 HELIX 30 AD3 LYS B 612 GLU B 616 5 5 HELIX 31 AD4 LEU B 694 LEU B 712 1 19 SHEET 1 AA1 4 THR A 9 ALA A 12 0 SHEET 2 AA1 4 GLN A 444 TYR A 448 -1 O VAL A 445 N TYR A 11 SHEET 3 AA1 4 LEU A 435 ALA A 439 -1 N LEU A 435 O TYR A 448 SHEET 4 AA1 4 LEU A 421 GLY A 423 -1 N ARG A 422 O ILE A 436 SHEET 1 AA2 3 LEU A 23 ASP A 28 0 SHEET 2 AA2 3 GLY A 31 ALA A 39 -1 O VAL A 36 N ASP A 24 SHEET 3 AA2 3 GLY A 52 CYS A 56 -1 O CYS A 56 N ILE A 35 SHEET 1 AA3 3 THR A 86 PHE A 87 0 SHEET 2 AA3 3 HIS A 112 TRP A 113 -1 O HIS A 112 N PHE A 87 SHEET 3 AA3 3 THR A 125 PRO A 126 -1 O THR A 125 N TRP A 113 SHEET 1 AA4 3 CYS A 107 ALA A 108 0 SHEET 2 AA4 3 SER A 129 LEU A 132 -1 O SER A 129 N ALA A 108 SHEET 3 AA4 3 ALA A 141 GLU A 142 -1 O ALA A 141 N LEU A 132 SHEET 1 AA5 2 LEU A 116 GLU A 117 0 SHEET 2 AA5 2 GLU A 120 GLU A 121 -1 O GLU A 120 N GLU A 117 SHEET 1 AA6 4 SER A 173 VAL A 175 0 SHEET 2 AA6 4 GLU A 180 ALA A 185 -1 O VAL A 182 N VAL A 174 SHEET 3 AA6 4 LEU A 194 PRO A 199 -1 O ALA A 196 N LEU A 183 SHEET 4 AA6 4 SER A 220 LEU A 221 -1 O SER A 220 N GLN A 197 SHEET 1 AA7 4 VAL A 239 GLY A 242 0 SHEET 2 AA7 4 GLU A 252 ALA A 257 -1 O VAL A 254 N ALA A 240 SHEET 3 AA7 4 ALA A 266 ILE A 269 -1 O ALA A 266 N ALA A 257 SHEET 4 AA7 4 HIS A 278 ARG A 281 -1 O LEU A 280 N VAL A 267 SHEET 1 AA8 4 VAL A 293 THR A 296 0 SHEET 2 AA8 4 ASP A 305 ALA A 310 -1 O LEU A 307 N ALA A 294 SHEET 3 AA8 4 ARG A 327 PHE A 331 -1 O TYR A 329 N VAL A 308 SHEET 4 AA8 4 LEU A 345 THR A 348 -1 O LEU A 347 N VAL A 328 SHEET 1 AA9 2 MET A 314 GLU A 315 0 SHEET 2 AA9 2 ALA A 323 GLU A 324 -1 O ALA A 323 N GLU A 315 SHEET 1 AB1 4 ILE A 360 PRO A 362 0 SHEET 2 AB1 4 ILE A 374 ALA A 378 -1 O ALA A 375 N ALA A 361 SHEET 3 AB1 4 GLN A 388 PHE A 392 -1 O LEU A 390 N VAL A 376 SHEET 4 AB1 4 GLN A 405 ASP A 408 -1 O LEU A 407 N VAL A 389 SHEET 1 AB2 4 CYS A 473 VAL A 474 0 SHEET 2 AB2 4 PRO A 481 THR A 494 -1 O VAL A 482 N CYS A 473 SHEET 3 AB2 4 ILE A 544 LEU A 552 -1 O ALA A 550 N PHE A 485 SHEET 4 AB2 4 VAL A 521 LEU A 523 -1 N LEU A 522 O PHE A 551 SHEET 1 AB3 4 CYS A 473 VAL A 474 0 SHEET 2 AB3 4 PRO A 481 THR A 494 -1 O VAL A 482 N CYS A 473 SHEET 3 AB3 4 VAL A 453 VAL A 462 -1 N SER A 457 O GLY A 492 SHEET 4 AB3 4 VAL A 585 GLY A 588 1 O HIS A 587 N VAL A 454 SHEET 1 AB4 4 GLY A 530 ASP A 536 0 SHEET 2 AB4 4 SER A 503 LEU A 510 -1 N LEU A 504 O LEU A 535 SHEET 3 AB4 4 ILE A 565 SER A 572 -1 O ASN A 570 N GLU A 507 SHEET 4 AB4 4 HIS A 591 THR A 596 -1 O THR A 596 N ILE A 565 SHEET 1 AB5 4 LEU A 612 THR A 619 0 SHEET 2 AB5 4 VAL A 630 ASN A 639 -1 O GLN A 634 N SER A 617 SHEET 3 AB5 4 ALA A 697 SER A 706 -1 O MET A 703 N LEU A 633 SHEET 4 AB5 4 HIS A 658 LEU A 663 -1 N LEU A 663 O ALA A 702 SHEET 1 AB6 6 LEU A 623 LEU A 624 0 SHEET 2 AB6 6 VAL A 736 ARG A 743 1 O ARG A 743 N LEU A 623 SHEET 3 AB6 6 SER A 716 ARG A 724 -1 N PHE A 719 O LEU A 738 SHEET 4 AB6 6 ALA A 647 LEU A 653 -1 N ALA A 650 O GLN A 722 SHEET 5 AB6 6 ARG A 683 GLY A 690 -1 O CYS A 687 N LEU A 649 SHEET 6 AB6 6 CYS A 674 LYS A 677 -1 N LYS A 677 O VAL A 684 SHEET 1 AB7 2 VAL A 748 GLU A 749 0 SHEET 2 AB7 2 HIS A 787 ASN A 788 -1 O HIS A 787 N GLU A 749 SHEET 1 AB8 4 SER A 758 VAL A 761 0 SHEET 2 AB8 4 THR A 953 ARG A 957 1 O LEU A 956 N VAL A 761 SHEET 3 AB8 4 VAL A 923 LEU A 924 -1 N LEU A 924 O THR A 953 SHEET 4 AB8 4 LEU A 877 VAL A 878 1 N VAL A 878 O VAL A 923 SHEET 1 AB9 2 LEU A 797 HIS A 798 0 SHEET 2 AB9 2 ASP A 891 LEU A 892 -1 O LEU A 892 N LEU A 797 SHEET 1 AC1 2 ILE A 801 PRO A 804 0 SHEET 2 AC1 2 CYS A 885 VAL A 888 -1 O THR A 886 N LEU A 803 SHEET 1 AC2 2 ILE A 815 ILE A 818 0 SHEET 2 AC2 2 VAL A 905 ALA A 907 -1 O LEU A 906 N LEU A 816 SHEET 1 AC3 3 CYS B 38 LEU B 40 0 SHEET 2 AC3 3 CYS B 23 CYS B 26 -1 N ALA B 24 O ASP B 39 SHEET 3 AC3 3 ILE B 54 GLU B 55 -1 O GLU B 55 N TRP B 25 SHEET 1 AC4 4 ALA B 61 GLU B 65 0 SHEET 2 AC4 4 ARG B 87 LEU B 90 -1 O ARG B 87 N LEU B 64 SHEET 3 AC4 4 LEU B 425 VAL B 429 1 O GLN B 428 N ILE B 88 SHEET 4 AC4 4 LYS B 412 ILE B 416 -1 N ILE B 416 O LEU B 425 SHEET 1 AC5 3 SER B 97 PHE B 100 0 SHEET 2 AC5 3 ILE B 399 VAL B 403 -1 O ILE B 399 N PHE B 100 SHEET 3 AC5 3 LEU B 366 SER B 369 -1 N SER B 369 O GLU B 400 SHEET 1 AC6 2 GLN B 103 ARG B 105 0 SHEET 2 AC6 2 THR B 394 SER B 396 -1 O VAL B 395 N VAL B 104 SHEET 1 AC7 6 LEU B 194 THR B 197 0 SHEET 2 AC7 6 LEU B 149 PHE B 156 -1 N ILE B 151 O THR B 197 SHEET 3 AC7 6 VAL B 112 ASP B 119 1 N ILE B 114 O ARG B 150 SHEET 4 AC7 6 SER B 243 THR B 249 1 O SER B 243 N ASP B 113 SHEET 5 AC7 6 ASN B 305 PHE B 308 1 O ILE B 307 N LEU B 246 SHEET 6 AC7 6 THR B 328 THR B 329 1 O THR B 329 N PHE B 308 SHEET 1 AC8 2 LYS B 354 GLU B 356 0 SHEET 2 AC8 2 SER B 385 MET B 387 -1 O CYS B 386 N VAL B 355 SHEET 1 AC9 2 GLY B 499 LEU B 502 0 SHEET 2 AC9 2 GLN B 505 CYS B 508 -1 O VAL B 507 N GLU B 500 SHEET 1 AD1 2 GLY B 540 SER B 543 0 SHEET 2 AD1 2 ASP B 546 CYS B 549 -1 O LEU B 548 N GLN B 541 SHEET 1 AD2 2 GLY B 579 GLU B 582 0 SHEET 2 AD2 2 SER B 585 CYS B 588 -1 O VAL B 587 N LYS B 580 SHEET 1 AD3 2 ASN B 654 LYS B 658 0 SHEET 2 AD3 2 VAL B 664 GLN B 668 -1 O PHE B 667 N CYS B 655 SSBOND 1 CYS A 56 CYS A 65 1555 1555 2.03 SSBOND 2 CYS A 107 CYS A 130 1555 1555 2.03 SSBOND 3 CYS A 146 CYS A 167 1555 1555 2.03 SSBOND 4 CYS A 473 CYS A 484 1555 1555 2.03 SSBOND 5 CYS A 490 CYS A 545 1555 1555 2.03 SSBOND 6 CYS A 602 CYS A 608 1555 1555 2.04 SSBOND 7 CYS A 674 CYS A 687 1555 1555 2.03 SSBOND 8 CYS A 826 CYS A 890 1555 1555 2.02 SSBOND 9 CYS A 880 CYS A 885 1555 1555 2.03 SSBOND 10 CYS B 5 CYS B 23 1555 1555 2.03 SSBOND 11 CYS B 13 CYS B 435 1555 1555 2.03 SSBOND 12 CYS B 16 CYS B 38 1555 1555 2.03 SSBOND 13 CYS B 26 CYS B 49 1555 1555 2.03 SSBOND 14 CYS B 177 CYS B 184 1555 1555 2.03 SSBOND 15 CYS B 232 CYS B 273 1555 1555 2.03 SSBOND 16 CYS B 374 CYS B 386 1555 1555 2.03 SSBOND 17 CYS B 406 CYS B 433 1555 1555 2.03 SSBOND 18 CYS B 437 CYS B 457 1555 1555 2.03 SSBOND 19 CYS B 448 CYS B 460 1555 1555 2.03 SSBOND 20 CYS B 462 CYS B 471 1555 1555 2.03 SSBOND 21 CYS B 473 CYS B 503 1555 1555 2.03 SSBOND 22 CYS B 486 CYS B 501 1555 1555 2.03 SSBOND 23 CYS B 495 CYS B 506 1555 1555 2.03 SSBOND 24 CYS B 508 CYS B 521 1555 1555 2.03 SSBOND 25 CYS B 523 CYS B 544 1555 1555 2.03 SSBOND 26 CYS B 528 CYS B 542 1555 1555 2.03 SSBOND 27 CYS B 536 CYS B 547 1555 1555 2.03 SSBOND 28 CYS B 549 CYS B 558 1555 1555 2.01 SSBOND 29 CYS B 560 CYS B 583 1555 1555 2.04 SSBOND 30 CYS B 567 CYS B 581 1555 1555 2.03 SSBOND 31 CYS B 575 CYS B 586 1555 1555 2.03 SSBOND 32 CYS B 588 CYS B 598 1555 1555 2.05 SSBOND 33 CYS B 601 CYS B 604 1555 1555 2.10 SSBOND 34 CYS B 608 CYS B 655 1555 1555 2.03 SSBOND 35 CYS B 614 CYS B 635 1555 1555 2.03 SSBOND 36 CYS B 617 CYS B 631 1555 1555 2.03 SSBOND 37 CYS B 663 CYS B 687 1555 1555 2.03 LINK ND2 ASN A 15 C1 NAG A1106 1555 1555 1.43 LINK ND2 ASN A 249 C1 NAG A1108 1555 1555 1.43 LINK ND2 ASN A 570 C1 NAG A1107 1555 1555 1.43 LINK ND2 ASN B 99 C1 NAG F 1 1555 1555 1.43 LINK ND2 ASN B 320 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 371 C1 NAG D 1 1555 1555 1.41 LINK ND2 ASN B 559 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O6 BMA C 3 C1 BMA C 5 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK OE1 GLU A 243 CA CA A1101 1555 1555 2.40 LINK OE2 GLU A 243 CA CA A1101 1555 1555 2.33 LINK OD1 ASP A 245 CA CA A1101 1555 1555 2.41 LINK OD2 ASP A 245 CA CA A1101 1555 1555 2.33 LINK O ASP A 247 CA CA A1101 1555 1555 2.36 LINK O THR A 250 CA CA A1101 1555 1555 2.31 LINK OG1 THR A 250 CA CA A1101 1555 1555 2.38 LINK OE1 GLU A 252 CA CA A1101 1555 1555 2.40 LINK OE2 GLU A 252 CA CA A1101 1555 1555 2.37 LINK OD1 ASP A 297 CA CA A1102 1555 1555 2.33 LINK OD1 ASN A 299 CA CA A1102 1555 1555 2.36 LINK OD1 ASP A 301 CA CA A1102 1555 1555 2.34 LINK O ARG A 303 CA CA A1102 1555 1555 2.42 LINK OD1 ASP A 305 CA CA A1102 1555 1555 2.32 LINK OD2 ASP A 305 CA CA A1102 1555 1555 2.36 LINK OD1 ASP A 365 CA CA A1103 1555 1555 2.50 LINK OD1 ASP A 367 CA CA A1103 1555 1555 2.24 LINK OD2 ASP A 367 CA CA A1103 1555 1555 2.50 LINK OD1 ASP A 369 CA CA A1103 1555 1555 2.28 LINK OD2 ASP A 369 CA CA A1103 1555 1555 2.43 LINK O TYR A 371 CA CA A1103 1555 1555 2.32 LINK OD1 ASP A 373 CA CA A1103 1555 1555 2.32 LINK OD2 ASP A 373 CA CA A1103 1555 1555 2.41 LINK OD1 ASP A 426 CA CA A1104 1555 1555 2.31 LINK OD1 ASP A 428 CA CA A1104 1555 1555 2.39 LINK OD1 ASN A 430 CA CA A1104 1555 1555 2.32 LINK O TYR A 432 CA CA A1104 1555 1555 2.41 LINK OD1 ASP A 434 CA CA A1104 1555 1555 2.21 LINK OD2 ASP A 434 CA CA A1104 1555 1555 2.43 LINK O CYS A 602 CA CA A1105 1555 1555 2.25 LINK OD2 ASP A 605 CA CA A1105 1555 1555 2.49 LINK OE2 GLU A 642 CA CA A1105 1555 1555 2.69 LINK OG SER B 123 MG MG B2001 1555 1555 2.18 LINK O SER B 123 CA CA B2002 1555 1555 2.48 LINK OD1 ASP B 126 CA CA B2002 1555 1555 2.37 LINK OD2 ASP B 126 CA CA B2002 1555 1555 2.36 LINK OD2 ASP B 158 CA CA B2003 1555 1555 2.40 LINK O ASP B 217 CA CA B2003 1555 1555 2.46 LINK OD1 ASP B 217 CA CA B2003 1555 1555 2.32 LINK O PRO B 219 CA CA B2003 1555 1555 2.25 LINK OE2 GLU B 220 MG MG B2001 1555 1555 2.17 LINK O MET B 335 CA CA B2002 1555 1555 3.02 CISPEP 1 ASN A 691 PRO A 692 0 -6.47 CISPEP 2 PHE A 755 PRO A 756 0 -0.75 CISPEP 3 GLN A 829 PRO A 830 0 -3.02 CISPEP 4 SER B 84 PRO B 85 0 -3.68 CISPEP 5 SER B 168 PRO B 169 0 2.40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000