data_8GD8 # _entry.id 8GD8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.396 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8GD8 pdb_00008gd8 10.2210/pdb8gd8/pdb WWPDB D_1000272637 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-11-15 2 'Structure model' 2 0 2024-09-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Database references' 5 2 'Structure model' 'Derived calculations' 6 2 'Structure model' 'Experimental preparation' 7 2 'Structure model' 'Non-polymer description' 8 2 'Structure model' 'Polymer sequence' 9 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' atom_site_anisotrop 3 2 'Structure model' chem_comp 4 2 'Structure model' chem_comp_atom 5 2 'Structure model' chem_comp_bond 6 2 'Structure model' entity 7 2 'Structure model' entity_poly 8 2 'Structure model' entity_poly_seq 9 2 'Structure model' exptl_crystal 10 2 'Structure model' pdbx_entity_nonpoly 11 2 'Structure model' pdbx_nonpoly_scheme 12 2 'Structure model' pdbx_poly_seq_scheme 13 2 'Structure model' pdbx_struct_assembly_gen 14 2 'Structure model' pdbx_unobs_or_zero_occ_residues 15 2 'Structure model' struct_asym 16 2 'Structure model' struct_conf 17 2 'Structure model' struct_conn 18 2 'Structure model' struct_ref # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_asym_id' 6 2 'Structure model' '_atom_site.auth_atom_id' 7 2 'Structure model' '_atom_site.auth_comp_id' 8 2 'Structure model' '_atom_site.auth_seq_id' 9 2 'Structure model' '_atom_site.group_PDB' 10 2 'Structure model' '_atom_site.label_alt_id' 11 2 'Structure model' '_atom_site.label_asym_id' 12 2 'Structure model' '_atom_site.label_atom_id' 13 2 'Structure model' '_atom_site.label_comp_id' 14 2 'Structure model' '_atom_site.label_entity_id' 15 2 'Structure model' '_atom_site.label_seq_id' 16 2 'Structure model' '_atom_site.occupancy' 17 2 'Structure model' '_atom_site.type_symbol' 18 2 'Structure model' '_atom_site_anisotrop.U[1][1]' 19 2 'Structure model' '_atom_site_anisotrop.U[1][2]' 20 2 'Structure model' '_atom_site_anisotrop.U[1][3]' 21 2 'Structure model' '_atom_site_anisotrop.U[2][2]' 22 2 'Structure model' '_atom_site_anisotrop.U[2][3]' 23 2 'Structure model' '_atom_site_anisotrop.U[3][3]' 24 2 'Structure model' '_atom_site_anisotrop.id' 25 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 26 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 27 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 28 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 29 2 'Structure model' '_atom_site_anisotrop.pdbx_label_alt_id' 30 2 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 31 2 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 32 2 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 33 2 'Structure model' '_atom_site_anisotrop.pdbx_label_seq_id' 34 2 'Structure model' '_atom_site_anisotrop.type_symbol' 35 2 'Structure model' '_chem_comp.formula' 36 2 'Structure model' '_chem_comp.formula_weight' 37 2 'Structure model' '_chem_comp.id' 38 2 'Structure model' '_chem_comp.mon_nstd_flag' 39 2 'Structure model' '_chem_comp.name' 40 2 'Structure model' '_chem_comp.type' 41 2 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 42 2 'Structure model' '_entity_poly_seq.mon_id' 43 2 'Structure model' '_exptl_crystal.density_Matthews' 44 2 'Structure model' '_exptl_crystal.density_percent_sol' 45 2 'Structure model' '_pdbx_poly_seq_scheme.auth_mon_id' 46 2 'Structure model' '_pdbx_poly_seq_scheme.auth_seq_num' 47 2 'Structure model' '_pdbx_poly_seq_scheme.mon_id' 48 2 'Structure model' '_pdbx_poly_seq_scheme.pdb_mon_id' 49 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 50 2 'Structure model' '_struct_conf.beg_auth_comp_id' 51 2 'Structure model' '_struct_conf.beg_auth_seq_id' 52 2 'Structure model' '_struct_conf.beg_label_comp_id' 53 2 'Structure model' '_struct_conf.beg_label_seq_id' 54 2 'Structure model' '_struct_conf.pdbx_PDB_helix_length' 55 2 'Structure model' '_struct_conn.pdbx_dist_value' 56 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 57 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 58 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 59 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 60 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 61 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 62 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 63 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 64 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 65 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 66 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 67 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 68 2 'Structure model' '_struct_ref.entity_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8GD8 _pdbx_database_status.recvd_initial_deposition_date 2023-03-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email andyn@uic.edu _pdbx_contact_author.name_first Andy _pdbx_contact_author.name_last Nguyen _pdbx_contact_author.name_mi I _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4137-6453 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hess, S.S.' 1 0000-0002-2125-7679 'Nguyen, A.I.' 2 0000-0003-4137-6453 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary J.Am.Chem.Soc. JACSAT ? 1520-5126 ? ? 145 ? 19588 19600 'Noncovalent Peptide Assembly Enables Crystalline, Permutable, and Reactive Thiol Frameworks.' 2023 ? 10.1021/jacs.3c03645 37639365 ? ? ? ? ? ? ? ? ? DK ? ? 1 'Acta Crystallogr., Sect. D: Biol. Crystallogr.' ABCRE6 0766 0907-4449 ? ? 68 ? 352 67 'Towards automated crystallographic structure refinement with phenix.refine.' 2012 ? ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hess, S.S.' 1 ? primary 'Coppola, F.' 2 0000-0002-2429-204X primary 'Dang, V.T.' 3 ? primary 'Tran, P.N.' 4 ? primary 'Mickel, P.J.' 5 ? primary 'Oktawiec, J.' 6 0000-0002-2895-3327 primary 'Ren, Z.' 7 0000-0001-7098-3127 primary 'Kral, P.' 8 0000-0003-2992-9027 primary 'Nguyen, A.I.' 9 0000-0003-4137-6453 1 'Afonine, P.V.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'bipyridyl-conjugated helical peptide' 1259.479 4 ? ? ? ? 2 water nat water 18.015 10 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(NIO)L(AIB)ACL(AIB)Q(AIB)L(I77)' _entity_poly.pdbx_seq_one_letter_code_can XLAACLAQALX _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 NIO n 1 2 LEU n 1 3 AIB n 1 4 ALA n 1 5 CYS n 1 6 LEU n 1 7 AIB n 1 8 GLN n 1 9 AIB n 1 10 LEU n 1 11 I77 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AIB 'L-peptide linking' n 'ALPHA-AMINOISOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 I77 non-polymer . "5'-(hydrazinecarbonyl)[2,2'-bipyridine]-5-carboxamide" ? 'C12 H11 N5 O2' 257.248 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NIO non-polymer . 'NICOTINIC ACID' ? 'C6 H5 N O2' 123.109 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 NIO 1 1 1 NIO NIO A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 AIB 3 3 3 AIB AIB A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 AIB 7 7 7 AIB AIB A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 AIB 9 9 9 AIB AIB A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 I77 11 11 11 I77 BPH A . n B 1 1 NIO 1 1 1 NIO NIO B . n B 1 2 LEU 2 2 2 LEU LEU B . n B 1 3 AIB 3 3 3 AIB AIB B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 CYS 5 5 5 CYS CYS B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 AIB 7 7 7 AIB AIB B . n B 1 8 GLN 8 8 8 GLN GLN B . n B 1 9 AIB 9 9 9 AIB AIB B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 I77 11 11 11 I77 BPH B . n C 1 1 NIO 1 1 1 NIO NIO C . n C 1 2 LEU 2 2 2 LEU LEU C . n C 1 3 AIB 3 3 3 AIB AIB C . n C 1 4 ALA 4 4 4 ALA ALA C . n C 1 5 CYS 5 5 5 CYS CYS C . n C 1 6 LEU 6 6 6 LEU LEU C . n C 1 7 AIB 7 7 7 AIB AIB C . n C 1 8 GLN 8 8 8 GLN GLN C . n C 1 9 AIB 9 9 9 AIB AIB C . n C 1 10 LEU 10 10 10 LEU LEU C . n C 1 11 I77 11 11 11 I77 BPH C . n D 1 1 NIO 1 1 1 NIO NIO D . n D 1 2 LEU 2 2 2 LEU LEU D . n D 1 3 AIB 3 3 3 AIB AIB D . n D 1 4 ALA 4 4 4 ALA ALA D . n D 1 5 CYS 5 5 5 CYS CYS D . n D 1 6 LEU 6 6 6 LEU LEU D . n D 1 7 AIB 7 7 7 AIB AIB D . n D 1 8 GLN 8 8 8 GLN GLN D . n D 1 9 AIB 9 9 9 AIB AIB D . n D 1 10 LEU 10 10 10 LEU LEU D . n D 1 11 I77 11 11 11 I77 BPH D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 201 5 HOH HOH A . E 2 HOH 2 202 7 HOH HOH A . E 2 HOH 3 203 8 HOH HOH A . E 2 HOH 4 204 9 HOH HOH A . F 2 HOH 1 201 2 HOH HOH B . G 2 HOH 1 201 1 HOH HOH C . G 2 HOH 2 202 3 HOH HOH C . H 2 HOH 1 201 6 HOH HOH D . H 2 HOH 2 202 4 HOH HOH D . H 2 HOH 3 203 10 HOH HOH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 89.990 _cell.angle_alpha_esd ? _cell.angle_beta 89.970 _cell.angle_beta_esd ? _cell.angle_gamma 90.011 _cell.angle_gamma_esd ? _cell.entry_id 8GD8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 8.791 _cell.length_a_esd ? _cell.length_b 16.592 _cell.length_b_esd ? _cell.length_c 51.150 _cell.length_c_esd ? _cell.volume 7460.752 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8GD8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8GD8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'SLOW COOLING' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details Water/Acetonitrile _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 298 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-04-29 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.619920 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.619920 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 5.04 _reflns.entry_id 8GD8 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.04 _reflns.d_resolution_low 16.59 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22123 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 88.81 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.47 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.04922 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.04 _reflns_shell.d_res_low 1.077 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1210 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.06539 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 8.33 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8GD8 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.04 _refine.ls_d_res_low 16.59 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22123 _refine.ls_number_reflns_R_free 2093 _refine.ls_number_reflns_R_work 20030 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 79.67 _refine.ls_percent_reflns_R_free 9.46 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2084 _refine.ls_R_factor_R_free 0.2310 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2059 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.04 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.7979 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1049 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.04 _refine_hist.d_res_low 16.59 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 366 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 248 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 108 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0091 ? 384 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.6585 ? 536 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0769 ? 40 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0108 ? 64 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 32.8260 ? 68 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.04 1.06 . . 126 1273 77.90 . . . . 0.2303 . . . . . . . . . . . 0.2493 'X-RAY DIFFRACTION' 1.06 1.09 . . 129 1411 78.49 . . . . 0.2006 . . . . . . . . . . . 0.2828 'X-RAY DIFFRACTION' 1.09 1.12 . . 145 1250 78.02 . . . . 0.2176 . . . . . . . . . . . 0.1833 'X-RAY DIFFRACTION' 1.12 1.15 . . 147 1278 76.12 . . . . 0.2060 . . . . . . . . . . . 0.1976 'X-RAY DIFFRACTION' 1.15 1.19 . . 128 1188 73.44 . . . . 0.2078 . . . . . . . . . . . 0.2889 'X-RAY DIFFRACTION' 1.19 1.23 . . 122 1236 72.08 . . . . 0.2186 . . . . . . . . . . . 0.2917 'X-RAY DIFFRACTION' 1.23 1.28 . . 122 1202 70.43 . . . . 0.2094 . . . . . . . . . . . 0.2693 'X-RAY DIFFRACTION' 1.28 1.34 . . 138 1350 82.03 . . . . 0.2230 . . . . . . . . . . . 0.2629 'X-RAY DIFFRACTION' 1.34 1.41 . . 124 1416 83.60 . . . . 0.2163 . . . . . . . . . . . 0.2616 'X-RAY DIFFRACTION' 1.41 1.50 . . 158 1450 83.49 . . . . 0.2216 . . . . . . . . . . . 0.3160 'X-RAY DIFFRACTION' 1.50 1.62 . . 142 1327 82.99 . . . . 0.2082 . . . . . . . . . . . 0.1862 'X-RAY DIFFRACTION' 1.62 1.78 . . 162 1431 84.46 . . . . 0.2198 . . . . . . . . . . . 0.2188 'X-RAY DIFFRACTION' 1.78 2.03 . . 142 1363 82.15 . . . . 0.1959 . . . . . . . . . . . 0.2553 'X-RAY DIFFRACTION' 2.03 2.56 . . 123 1252 75.05 . . . . 0.1999 . . . . . . . . . . . 0.1896 'X-RAY DIFFRACTION' 2.56 16.59 . . 185 1603 94.70 . . . . 0.1905 . . . . . . . . . . . 0.2093 # _struct.entry_id 8GD8 _struct.title 'Porous framework formed by assembly of a bipyridyl-conjugated helical peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8GD8 _struct_keywords.text 'DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8GD8 _struct_ref.pdbx_db_accession 8GD8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 2 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8GD8 A 1 ? 11 ? 8GD8 1 ? 11 ? 1 11 2 1 8GD8 B 1 ? 11 ? 8GD8 1 ? 11 ? 1 11 3 1 8GD8 C 1 ? 11 ? 8GD8 1 ? 11 ? 1 11 4 1 8GD8 D 1 ? 11 ? 8GD8 1 ? 11 ? 1 11 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,G 2 1 B,D,F,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 AIB A 3 ? LEU A 10 ? AIB A 3 LEU A 10 1 ? 8 HELX_P HELX_P2 AA2 AIB B 3 ? LEU B 10 ? AIB B 3 LEU B 10 1 ? 8 HELX_P HELX_P3 AA3 AIB C 3 ? LEU C 10 ? AIB C 3 LEU C 10 1 ? 8 HELX_P HELX_P4 AA4 AIB D 3 ? LEU D 10 ? AIB D 3 LEU D 10 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A NIO 1 C6 ? ? ? 1_555 A LEU 2 N ? ? A NIO 1 A LEU 2 1_555 ? ? ? ? ? ? ? 1.422 ? ? covale2 covale both ? A LEU 2 C ? ? ? 1_555 A AIB 3 N ? ? A LEU 2 A AIB 3 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale3 covale both ? A AIB 3 C ? ? ? 1_555 A ALA 4 N ? ? A AIB 3 A ALA 4 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A LEU 6 C ? ? ? 1_555 A AIB 7 N ? ? A LEU 6 A AIB 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? A AIB 7 C ? ? ? 1_555 A GLN 8 N ? ? A AIB 7 A GLN 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? A GLN 8 C ? ? ? 1_555 A AIB 9 N ? ? A GLN 8 A AIB 9 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale7 covale both ? A AIB 9 C ? ? ? 1_555 A LEU 10 N ? ? A AIB 9 A LEU 10 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale8 covale one ? A LEU 10 C ? ? ? 1_555 A I77 11 N15 ? ? A LEU 10 A I77 11 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale9 covale one ? B NIO 1 C6 ? ? ? 1_555 B LEU 2 N ? ? B NIO 1 B LEU 2 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale10 covale both ? B LEU 2 C ? ? ? 1_555 B AIB 3 N ? ? B LEU 2 B AIB 3 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale11 covale both ? B AIB 3 C ? ? ? 1_555 B ALA 4 N ? ? B AIB 3 B ALA 4 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? B LEU 6 C ? ? ? 1_555 B AIB 7 N ? ? B LEU 6 B AIB 7 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale13 covale both ? B AIB 7 C ? ? ? 1_555 B GLN 8 N ? ? B AIB 7 B GLN 8 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale14 covale both ? B GLN 8 C ? ? ? 1_555 B AIB 9 N ? ? B GLN 8 B AIB 9 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale15 covale both ? B AIB 9 C ? ? ? 1_555 B LEU 10 N ? ? B AIB 9 B LEU 10 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale16 covale one ? B LEU 10 C ? ? ? 1_555 B I77 11 N15 ? ? B LEU 10 B I77 11 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale17 covale one ? C NIO 1 C6 ? ? ? 1_555 C LEU 2 N ? ? C NIO 1 C LEU 2 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale18 covale both ? C LEU 2 C ? ? ? 1_555 C AIB 3 N ? ? C LEU 2 C AIB 3 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale19 covale both ? C AIB 3 C ? ? ? 1_555 C ALA 4 N ? ? C AIB 3 C ALA 4 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale20 covale both ? C LEU 6 C ? ? ? 1_555 C AIB 7 N ? ? C LEU 6 C AIB 7 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale21 covale both ? C AIB 7 C ? ? ? 1_555 C GLN 8 N ? ? C AIB 7 C GLN 8 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale22 covale both ? C GLN 8 C ? ? ? 1_555 C AIB 9 N ? ? C GLN 8 C AIB 9 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale23 covale both ? C AIB 9 C ? ? ? 1_555 C LEU 10 N ? ? C AIB 9 C LEU 10 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale24 covale one ? C LEU 10 C ? ? ? 1_555 C I77 11 N15 ? ? C LEU 10 C I77 11 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale25 covale one ? D NIO 1 C6 ? ? ? 1_555 D LEU 2 N ? ? D NIO 1 D LEU 2 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale26 covale both ? D LEU 2 C ? ? ? 1_555 D AIB 3 N ? ? D LEU 2 D AIB 3 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale27 covale both ? D AIB 3 C ? ? ? 1_555 D ALA 4 N ? ? D AIB 3 D ALA 4 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale28 covale both ? D LEU 6 C ? ? ? 1_555 D AIB 7 N ? ? D LEU 6 D AIB 7 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale29 covale both ? D AIB 7 C ? ? ? 1_555 D GLN 8 N ? ? D AIB 7 D GLN 8 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale30 covale both ? D GLN 8 C ? ? ? 1_555 D AIB 9 N ? ? D GLN 8 D AIB 9 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale31 covale both ? D AIB 9 C ? ? ? 1_555 D LEU 10 N ? ? D AIB 9 D LEU 10 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale32 covale one ? D LEU 10 C ? ? ? 1_555 D I77 11 N15 ? ? D LEU 10 D I77 11 1_555 ? ? ? ? ? ? ? 1.432 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 8GD8 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification ? # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AIB N N N N 1 AIB CA C N N 2 AIB C C N N 3 AIB O O N N 4 AIB OXT O N N 5 AIB CB1 C N N 6 AIB CB2 C N N 7 AIB H H N N 8 AIB H2 H N N 9 AIB HXT H N N 10 AIB HB11 H N N 11 AIB HB12 H N N 12 AIB HB13 H N N 13 AIB HB21 H N N 14 AIB HB22 H N N 15 AIB HB23 H N N 16 ALA N N N N 17 ALA CA C N S 18 ALA C C N N 19 ALA O O N N 20 ALA CB C N N 21 ALA OXT O N N 22 ALA H H N N 23 ALA H2 H N N 24 ALA HA H N N 25 ALA HB1 H N N 26 ALA HB2 H N N 27 ALA HB3 H N N 28 ALA HXT H N N 29 CYS N N N N 30 CYS CA C N R 31 CYS C C N N 32 CYS O O N N 33 CYS CB C N N 34 CYS SG S N N 35 CYS OXT O N N 36 CYS H H N N 37 CYS H2 H N N 38 CYS HA H N N 39 CYS HB2 H N N 40 CYS HB3 H N N 41 CYS HG H N N 42 CYS HXT H N N 43 GLN N N N N 44 GLN CA C N S 45 GLN C C N N 46 GLN O O N N 47 GLN CB C N N 48 GLN CG C N N 49 GLN CD C N N 50 GLN OE1 O N N 51 GLN NE2 N N N 52 GLN OXT O N N 53 GLN H H N N 54 GLN H2 H N N 55 GLN HA H N N 56 GLN HB2 H N N 57 GLN HB3 H N N 58 GLN HG2 H N N 59 GLN HG3 H N N 60 GLN HE21 H N N 61 GLN HE22 H N N 62 GLN HXT H N N 63 HOH O O N N 64 HOH H1 H N N 65 HOH H2 H N N 66 I77 C11 C Y N 67 I77 C12 C Y N 68 I77 C13 C N N 69 I77 C17 C Y N 70 I77 C18 C Y N 71 I77 C02 C N N 72 I77 C03 C Y N 73 I77 C04 C Y N 74 I77 C05 C Y N 75 I77 C06 C Y N 76 I77 C08 C Y N 77 I77 C09 C Y N 78 I77 N01 N N N 79 I77 N07 N Y N 80 I77 N10 N Y N 81 I77 N14 N N N 82 I77 N15 N N N 83 I77 O16 O N N 84 I77 O19 O N N 85 I77 H111 H N N 86 I77 H171 H N N 87 I77 H181 H N N 88 I77 H041 H N N 89 I77 H051 H N N 90 I77 H061 H N N 91 I77 H011 H N N 92 I77 H012 H N N 93 I77 H141 H N N 94 I77 H1 H N N 95 I77 H2 H N N 96 LEU N N N N 97 LEU CA C N S 98 LEU C C N N 99 LEU O O N N 100 LEU CB C N N 101 LEU CG C N N 102 LEU CD1 C N N 103 LEU CD2 C N N 104 LEU OXT O N N 105 LEU H H N N 106 LEU H2 H N N 107 LEU HA H N N 108 LEU HB2 H N N 109 LEU HB3 H N N 110 LEU HG H N N 111 LEU HD11 H N N 112 LEU HD12 H N N 113 LEU HD13 H N N 114 LEU HD21 H N N 115 LEU HD22 H N N 116 LEU HD23 H N N 117 LEU HXT H N N 118 NIO N N Y N 119 NIO C1 C Y N 120 NIO C2 C Y N 121 NIO C3 C Y N 122 NIO C4 C Y N 123 NIO C5 C Y N 124 NIO C6 C N N 125 NIO O1 O N N 126 NIO O2 O N N 127 NIO H1 H N N 128 NIO H3 H N N 129 NIO H4 H N N 130 NIO H5 H N N 131 NIO HO2 H N N 132 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AIB N CA sing N N 1 AIB N H sing N N 2 AIB N H2 sing N N 3 AIB CA C sing N N 4 AIB CA CB1 sing N N 5 AIB CA CB2 sing N N 6 AIB C O doub N N 7 AIB C OXT sing N N 8 AIB OXT HXT sing N N 9 AIB CB1 HB11 sing N N 10 AIB CB1 HB12 sing N N 11 AIB CB1 HB13 sing N N 12 AIB CB2 HB21 sing N N 13 AIB CB2 HB22 sing N N 14 AIB CB2 HB23 sing N N 15 ALA N CA sing N N 16 ALA N H sing N N 17 ALA N H2 sing N N 18 ALA CA C sing N N 19 ALA CA CB sing N N 20 ALA CA HA sing N N 21 ALA C O doub N N 22 ALA C OXT sing N N 23 ALA CB HB1 sing N N 24 ALA CB HB2 sing N N 25 ALA CB HB3 sing N N 26 ALA OXT HXT sing N N 27 CYS N CA sing N N 28 CYS N H sing N N 29 CYS N H2 sing N N 30 CYS CA C sing N N 31 CYS CA CB sing N N 32 CYS CA HA sing N N 33 CYS C O doub N N 34 CYS C OXT sing N N 35 CYS CB SG sing N N 36 CYS CB HB2 sing N N 37 CYS CB HB3 sing N N 38 CYS SG HG sing N N 39 CYS OXT HXT sing N N 40 GLN N CA sing N N 41 GLN N H sing N N 42 GLN N H2 sing N N 43 GLN CA C sing N N 44 GLN CA CB sing N N 45 GLN CA HA sing N N 46 GLN C O doub N N 47 GLN C OXT sing N N 48 GLN CB CG sing N N 49 GLN CB HB2 sing N N 50 GLN CB HB3 sing N N 51 GLN CG CD sing N N 52 GLN CG HG2 sing N N 53 GLN CG HG3 sing N N 54 GLN CD OE1 doub N N 55 GLN CD NE2 sing N N 56 GLN NE2 HE21 sing N N 57 GLN NE2 HE22 sing N N 58 GLN OXT HXT sing N N 59 HOH O H1 sing N N 60 HOH O H2 sing N N 61 I77 N15 N14 sing N N 62 I77 O16 C13 doub N N 63 I77 N14 C13 sing N N 64 I77 C13 C12 sing N N 65 I77 C12 C17 doub Y N 66 I77 C12 C11 sing Y N 67 I77 C17 C18 sing Y N 68 I77 C11 N10 doub Y N 69 I77 C18 C09 doub Y N 70 I77 N10 C09 sing Y N 71 I77 C09 C08 sing N N 72 I77 C08 N07 doub Y N 73 I77 C08 C05 sing Y N 74 I77 N07 C06 sing Y N 75 I77 C05 C04 doub Y N 76 I77 C06 C03 doub Y N 77 I77 C04 C03 sing Y N 78 I77 C03 C02 sing N N 79 I77 C02 N01 sing N N 80 I77 C02 O19 doub N N 81 I77 C11 H111 sing N N 82 I77 C17 H171 sing N N 83 I77 C18 H181 sing N N 84 I77 C04 H041 sing N N 85 I77 C05 H051 sing N N 86 I77 C06 H061 sing N N 87 I77 N01 H011 sing N N 88 I77 N01 H012 sing N N 89 I77 N14 H141 sing N N 90 I77 N15 H1 sing N N 91 I77 N15 H2 sing N N 92 LEU N CA sing N N 93 LEU N H sing N N 94 LEU N H2 sing N N 95 LEU CA C sing N N 96 LEU CA CB sing N N 97 LEU CA HA sing N N 98 LEU C O doub N N 99 LEU C OXT sing N N 100 LEU CB CG sing N N 101 LEU CB HB2 sing N N 102 LEU CB HB3 sing N N 103 LEU CG CD1 sing N N 104 LEU CG CD2 sing N N 105 LEU CG HG sing N N 106 LEU CD1 HD11 sing N N 107 LEU CD1 HD12 sing N N 108 LEU CD1 HD13 sing N N 109 LEU CD2 HD21 sing N N 110 LEU CD2 HD22 sing N N 111 LEU CD2 HD23 sing N N 112 LEU OXT HXT sing N N 113 NIO N C1 doub Y N 114 NIO N C5 sing Y N 115 NIO C1 C2 sing Y N 116 NIO C1 H1 sing N N 117 NIO C2 C3 doub Y N 118 NIO C2 C6 sing N N 119 NIO C3 C4 sing Y N 120 NIO C3 H3 sing N N 121 NIO C4 C5 doub Y N 122 NIO C4 H4 sing N N 123 NIO C5 H5 sing N N 124 NIO C6 O1 doub N N 125 NIO C6 O2 sing N N 126 NIO O2 HO2 sing N N 127 # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details model # _space_group.name_H-M_alt 'P 1' _space_group.name_Hall 'P 1' _space_group.IT_number 1 _space_group.crystal_system triclinic _space_group.id 1 # _atom_sites.entry_id 8GD8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.113753 _atom_sites.fract_transf_matrix[1][2] 0.000022 _atom_sites.fract_transf_matrix[1][3] -0.000060 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.060270 _atom_sites.fract_transf_matrix[2][3] -0.000011 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019550 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.53795 0.34799 0.11320 ? 10.08003 29.74760 2.57510 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_