HEADER TRANSCRIPTION 06-MAR-23 8GDX TITLE CRYSTAL STRUCTURE OF JADE1 PZP DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN JADE-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PZP DOMAIN; COMPND 5 SYNONYM: JADE FAMILY PHD FINGER PROTEIN 1,PHD FINGER PROTEIN 17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JADE1, KIAA1807, PHF17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE ACETYLATION, TRANSCRIPTION ACTIVATION, NUCLEOSOME, PVHL, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR B.J.KLEIN,J.LIU,T.G.KUTATELADZE REVDAT 3 31-JUL-24 8GDX 1 JRNL REVDAT 2 20-MAR-24 8GDX 1 JRNL REVDAT 1 13-MAR-24 8GDX 0 JRNL AUTH N.GAURAV,A.KANAI,C.LACHANCE,K.L.COX,J.LIU,A.T.GRZYBOWSKI, JRNL AUTH 2 N.SAKSOUK,B.J.KLEIN,Y.KOMATA,S.ASADA,A.J.RUTHENBURG, JRNL AUTH 3 M.G.POIRIER,J.COTE,A.YOKOYAMA,T.G.KUTATELADZE JRNL TITL GUIDING THE HBO1 COMPLEX FUNCTION THROUGH THE JADE SUBUNIT. JRNL REF NAT.STRUCT.MOL.BIOL. V. 31 1039 2024 JRNL REFN ESSN 1545-9985 JRNL PMID 38448574 JRNL DOI 10.1038/S41594-024-01245-2 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 4908 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7900 - 3.4500 1.00 2387 122 0.2055 0.2371 REMARK 3 2 3.4500 - 2.7400 0.99 2292 107 0.2575 0.3549 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 203 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9296 -26.7626 8.2458 REMARK 3 T TENSOR REMARK 3 T11: 0.2742 T22: 0.3649 REMARK 3 T33: 0.2357 T12: 0.0371 REMARK 3 T13: -0.0047 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 3.0317 L22: 3.4627 REMARK 3 L33: 3.4306 L12: 0.5337 REMARK 3 L13: 1.6395 L23: -0.4424 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: -0.5103 S13: 0.0457 REMARK 3 S21: 0.1518 S22: -0.1015 S23: 0.2254 REMARK 3 S31: -0.1614 S32: -0.5595 S33: 0.1896 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6559 -16.6688 10.4349 REMARK 3 T TENSOR REMARK 3 T11: 0.2594 T22: 0.4064 REMARK 3 T33: 0.3810 T12: -0.0930 REMARK 3 T13: -0.0369 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 2.4687 L22: 3.0149 REMARK 3 L33: 2.3908 L12: 0.9435 REMARK 3 L13: 1.8699 L23: -0.7948 REMARK 3 S TENSOR REMARK 3 S11: 0.4718 S12: -0.0841 S13: -0.5472 REMARK 3 S21: 0.3345 S22: -0.3062 S23: 0.0268 REMARK 3 S31: 0.2085 S32: 0.0830 S33: -0.0903 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3047 -19.9554 0.1901 REMARK 3 T TENSOR REMARK 3 T11: 0.3044 T22: 0.4154 REMARK 3 T33: 0.3399 T12: -0.0253 REMARK 3 T13: -0.0813 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.9139 L22: 2.9027 REMARK 3 L33: 2.6286 L12: -0.4406 REMARK 3 L13: -0.5629 L23: -0.7112 REMARK 3 S TENSOR REMARK 3 S11: 0.4680 S12: 0.2020 S13: -0.6527 REMARK 3 S21: -0.1109 S22: -0.3094 S23: 0.3644 REMARK 3 S31: 0.2547 S32: 0.1714 S33: -0.1512 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4449 -9.6097 -1.9498 REMARK 3 T TENSOR REMARK 3 T11: 0.2900 T22: 0.4487 REMARK 3 T33: 0.3712 T12: -0.0910 REMARK 3 T13: -0.0520 T23: 0.0750 REMARK 3 L TENSOR REMARK 3 L11: 2.8540 L22: 5.3899 REMARK 3 L33: 2.4503 L12: -0.6033 REMARK 3 L13: 0.0520 L23: -0.9723 REMARK 3 S TENSOR REMARK 3 S11: 0.0940 S12: 0.1468 S13: 0.2980 REMARK 3 S21: -0.0862 S22: -0.3764 S23: -0.6267 REMARK 3 S31: -0.2190 S32: 0.3092 S33: 0.2755 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4734 -8.9848 -4.5297 REMARK 3 T TENSOR REMARK 3 T11: 0.1777 T22: 0.3872 REMARK 3 T33: 0.3077 T12: 0.0424 REMARK 3 T13: -0.0060 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 4.5245 L22: 3.9314 REMARK 3 L33: 3.6938 L12: 0.2672 REMARK 3 L13: -0.7002 L23: 0.1935 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: 0.1705 S13: -0.0567 REMARK 3 S21: -0.1171 S22: -0.1172 S23: 0.0746 REMARK 3 S31: -0.0502 S32: 0.1896 S33: 0.0560 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2263 -12.2343 -12.1492 REMARK 3 T TENSOR REMARK 3 T11: 0.2081 T22: 0.5366 REMARK 3 T33: 0.7186 T12: -0.0441 REMARK 3 T13: -0.0803 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3596 L22: 1.8159 REMARK 3 L33: 3.6991 L12: -0.6766 REMARK 3 L13: -0.6599 L23: 0.0905 REMARK 3 S TENSOR REMARK 3 S11: 0.1296 S12: 0.4693 S13: -0.7639 REMARK 3 S21: 0.1880 S22: -0.0734 S23: -0.4596 REMARK 3 S31: -0.1875 S32: -0.1137 S33: -0.0201 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 28.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ERC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.71950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.71950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.71950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.71950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.71950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.71950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 40.71950 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 40.71950 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 40.71950 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 40.71950 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 40.71950 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 40.71950 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 40.71950 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 40.71950 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 40.71950 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 40.71950 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 40.71950 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 40.71950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 507 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 513 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 200 REMARK 465 ASP A 201 REMARK 465 GLU A 202 REMARK 465 ASN A 356 REMARK 465 ASP A 357 REMARK 465 SER A 370 REMARK 465 HIS A 371 REMARK 465 ARG A 372 REMARK 465 LYS A 373 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 218 69.90 -152.27 REMARK 500 LYS A 225 -64.49 -96.36 REMARK 500 GLU A 298 153.21 177.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 206 SG REMARK 620 2 CYS A 209 SG 112.1 REMARK 620 3 HIS A 231 ND1 94.3 98.4 REMARK 620 4 CYS A 234 SG 116.3 115.1 117.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 223 SG REMARK 620 2 CYS A 226 SG 110.0 REMARK 620 3 CYS A 247 SG 102.6 117.1 REMARK 620 4 CYS A 250 SG 115.1 112.7 98.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 258 SG REMARK 620 2 CYS A 261 SG 113.3 REMARK 620 3 HIS A 279 ND1 99.5 85.6 REMARK 620 4 CYS A 282 SG 127.9 106.9 115.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 315 SG REMARK 620 2 CYS A 318 SG 109.3 REMARK 620 3 HIS A 338 ND1 97.4 104.4 REMARK 620 4 CYS A 341 SG 120.2 112.2 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 328 SG REMARK 620 2 CYS A 333 SG 109.1 REMARK 620 3 CYS A 365 SG 111.2 106.7 REMARK 620 4 HIS A 368 ND1 96.7 120.2 112.6 REMARK 620 N 1 2 3 DBREF 8GDX A 201 373 UNP Q6IE81 JADE1_HUMAN 201 373 SEQADV 8GDX GLY A 200 UNP Q6IE81 EXPRESSION TAG SEQRES 1 A 174 GLY ASP GLU ASP VAL VAL CYS ASP VAL CYS GLN SER PRO SEQRES 2 A 174 ASP GLY GLU ASP GLY ASN GLU MET VAL PHE CYS ASP LYS SEQRES 3 A 174 CYS ASN ILE CYS VAL HIS GLN ALA CYS TYR GLY ILE LEU SEQRES 4 A 174 LYS VAL PRO GLU GLY SER TRP LEU CYS ARG THR CYS ALA SEQRES 5 A 174 LEU GLY VAL GLN PRO LYS CYS LEU LEU CYS PRO LYS LYS SEQRES 6 A 174 GLY GLY ALA MET LYS PRO THR ARG SER GLY THR LYS TRP SEQRES 7 A 174 VAL HIS VAL SER CYS ALA LEU TRP ILE PRO GLU VAL SER SEQRES 8 A 174 ILE GLY SER PRO GLU LYS MET GLU PRO ILE THR LYS VAL SEQRES 9 A 174 SER HIS ILE PRO SER SER ARG TRP ALA LEU VAL CYS SER SEQRES 10 A 174 LEU CYS ASN GLU LYS PHE GLY ALA SER ILE GLN CYS SER SEQRES 11 A 174 VAL LYS ASN CYS ARG THR ALA PHE HIS VAL THR CYS ALA SEQRES 12 A 174 PHE ASP ARG GLY LEU GLU MET LYS THR ILE LEU ALA GLU SEQRES 13 A 174 ASN ASP GLU VAL LYS PHE LYS SER TYR CYS PRO LYS HIS SEQRES 14 A 174 SER SER HIS ARG LYS HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET GOL A 406 14 HET GOL A 407 14 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 5(ZN 2+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *13(H2 O) HELIX 1 AA1 GLN A 232 GLY A 236 1 5 HELIX 2 AA2 CYS A 247 GLY A 253 1 7 HELIX 3 AA3 VAL A 280 ILE A 286 1 7 HELIX 4 AA4 LYS A 302 ILE A 306 5 5 HELIX 5 AA5 PRO A 307 LEU A 313 1 7 HELIX 6 AA6 HIS A 338 GLY A 346 1 9 SHEET 1 AA1 2 MET A 220 PHE A 222 0 SHEET 2 AA1 2 CYS A 229 HIS A 231 -1 O VAL A 230 N VAL A 221 SHEET 1 AA2 2 MET A 268 PRO A 270 0 SHEET 2 AA2 2 TRP A 277 HIS A 279 -1 O VAL A 278 N LYS A 269 SHEET 1 AA3 2 SER A 290 SER A 293 0 SHEET 2 AA3 2 GLU A 298 THR A 301 -1 O PRO A 299 N GLY A 292 SHEET 1 AA4 2 ILE A 326 GLN A 327 0 SHEET 2 AA4 2 ALA A 336 PHE A 337 -1 O PHE A 337 N ILE A 326 SHEET 1 AA5 2 GLU A 348 LEU A 353 0 SHEET 2 AA5 2 VAL A 359 TYR A 364 -1 O LYS A 360 N ILE A 352 LINK SG CYS A 206 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 209 ZN ZN A 401 1555 1555 2.28 LINK SG CYS A 223 ZN ZN A 405 1555 1555 2.28 LINK SG CYS A 226 ZN ZN A 405 1555 1555 2.30 LINK ND1 HIS A 231 ZN ZN A 401 1555 1555 2.04 LINK SG CYS A 234 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 247 ZN ZN A 405 1555 1555 2.27 LINK SG CYS A 250 ZN ZN A 405 1555 1555 2.29 LINK SG CYS A 258 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 261 ZN ZN A 402 1555 1555 2.32 LINK ND1 HIS A 279 ZN ZN A 402 1555 1555 2.04 LINK SG CYS A 282 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 315 ZN ZN A 403 1555 1555 2.29 LINK SG CYS A 318 ZN ZN A 403 1555 1555 2.29 LINK SG CYS A 328 ZN ZN A 404 1555 1555 2.33 LINK SG CYS A 333 ZN ZN A 404 1555 1555 2.29 LINK ND1 HIS A 338 ZN ZN A 403 1555 1555 2.04 LINK SG CYS A 341 ZN ZN A 403 1555 1555 2.27 LINK SG CYS A 365 ZN ZN A 404 1555 1555 2.31 LINK ND1 HIS A 368 ZN ZN A 404 1555 1555 2.02 CISPEP 1 GLU A 298 PRO A 299 0 -0.62 CRYST1 81.439 81.439 81.439 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012279 0.00000