data_8GF7 # _entry.id 8GF7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8GF7 pdb_00008gf7 10.2210/pdb8gf7/pdb WWPDB D_1000272836 ? ? EMDB EMD-29980 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-11-08 2 'Structure model' 1 1 2024-02-28 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 3 'Structure model' '_citation.journal_volume' 10 3 'Structure model' '_citation.page_first' 11 3 'Structure model' '_citation.page_last' 12 3 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8GF7 _pdbx_database_status.recvd_initial_deposition_date 2023-03-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils' _pdbx_database_related.db_id EMD-29980 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 lorena.saelicesgomez@utsouthwestern.edu Lorena Saelices ? 'principal investigator/group leader' 0000-0002-1904-2150 4 mattherp@usc.edu Matthew Pratt R. 'principal investigator/group leader' 0000-0003-3205-5615 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Balana, J.A.' 1 0000-0002-1417-9887 'Nguyen, A.B.' 2 0000-0001-7055-8809 'Saelices, L.' 3 0000-0002-1904-2150 'Pratt, R.M.' 4 0000-0003-3205-5615 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 20 _citation.language ? _citation.page_first 646 _citation.page_last 655 _citation.title 'O-GlcNAc forces an alpha-synuclein amyloid strain with notably diminished seeding and pathology.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-024-01551-2 _citation.pdbx_database_id_PubMed 38347213 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Balana, A.T.' 1 ? primary 'Mahul-Mellier, A.L.' 2 ? primary 'Nguyen, B.A.' 3 ? primary 'Horvath, M.' 4 ? primary 'Javed, A.' 5 ? primary 'Hard, E.R.' 6 ? primary 'Jasiqi, Y.' 7 ? primary 'Singh, P.' 8 ? primary 'Afrin, S.' 9 ? primary 'Pedretti, R.' 10 ? primary 'Singh, V.' 11 ? primary 'Lee, V.M.' 12 ? primary 'Luk, K.C.' 13 ? primary 'Saelices, L.' 14 ? primary 'Lashuel, H.A.' 15 ? primary 'Pratt, M.R.' 16 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Alpha-synuclein 8781.005 6 ? ? ? ? 2 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 6 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Non-A beta component of AD amyloid,Non-A4 component of amyloid precursor,NACP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAG SIAAATGFVK ; _entity_poly.pdbx_seq_one_letter_code_can ;GLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAG SIAAATGFVK ; _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 SER n 1 4 LYS n 1 5 ALA n 1 6 LYS n 1 7 GLU n 1 8 GLY n 1 9 VAL n 1 10 VAL n 1 11 ALA n 1 12 ALA n 1 13 ALA n 1 14 GLU n 1 15 LYS n 1 16 THR n 1 17 LYS n 1 18 GLN n 1 19 GLY n 1 20 VAL n 1 21 ALA n 1 22 GLU n 1 23 ALA n 1 24 ALA n 1 25 GLY n 1 26 LYS n 1 27 THR n 1 28 LYS n 1 29 GLU n 1 30 GLY n 1 31 VAL n 1 32 LEU n 1 33 TYR n 1 34 VAL n 1 35 GLY n 1 36 SER n 1 37 LYS n 1 38 THR n 1 39 LYS n 1 40 GLU n 1 41 GLY n 1 42 VAL n 1 43 VAL n 1 44 HIS n 1 45 GLY n 1 46 VAL n 1 47 ALA n 1 48 THR n 1 49 VAL n 1 50 ALA n 1 51 GLU n 1 52 LYS n 1 53 THR n 1 54 LYS n 1 55 GLU n 1 56 GLN n 1 57 VAL n 1 58 THR n 1 59 ASN n 1 60 VAL n 1 61 GLY n 1 62 GLY n 1 63 ALA n 1 64 VAL n 1 65 VAL n 1 66 THR n 1 67 GLY n 1 68 VAL n 1 69 THR n 1 70 ALA n 1 71 VAL n 1 72 ALA n 1 73 GLN n 1 74 LYS n 1 75 THR n 1 76 VAL n 1 77 GLU n 1 78 GLY n 1 79 ALA n 1 80 GLY n 1 81 SER n 1 82 ILE n 1 83 ALA n 1 84 ALA n 1 85 ALA n 1 86 THR n 1 87 GLY n 1 88 PHE n 1 89 VAL n 1 90 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 90 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 7 7 GLY GLY A . n A 1 2 LEU 2 8 8 LEU LEU A . n A 1 3 SER 3 9 9 SER SER A . n A 1 4 LYS 4 10 10 LYS LYS A . n A 1 5 ALA 5 11 11 ALA ALA A . n A 1 6 LYS 6 12 12 LYS LYS A . n A 1 7 GLU 7 13 13 GLU GLU A . n A 1 8 GLY 8 14 14 GLY GLY A . n A 1 9 VAL 9 15 15 VAL VAL A . n A 1 10 VAL 10 16 16 VAL VAL A . n A 1 11 ALA 11 17 17 ALA ALA A . n A 1 12 ALA 12 18 18 ALA ALA A . n A 1 13 ALA 13 19 19 ALA ALA A . n A 1 14 GLU 14 20 20 GLU GLU A . n A 1 15 LYS 15 21 21 LYS LYS A . n A 1 16 THR 16 22 22 THR THR A . n A 1 17 LYS 17 23 23 LYS LYS A . n A 1 18 GLN 18 24 24 GLN GLN A . n A 1 19 GLY 19 25 25 GLY GLY A . n A 1 20 VAL 20 26 26 VAL VAL A . n A 1 21 ALA 21 27 27 ALA ALA A . n A 1 22 GLU 22 28 28 GLU GLU A . n A 1 23 ALA 23 29 29 ALA ALA A . n A 1 24 ALA 24 30 30 ALA ALA A . n A 1 25 GLY 25 31 31 GLY GLY A . n A 1 26 LYS 26 32 32 LYS LYS A . n A 1 27 THR 27 33 33 THR THR A . n A 1 28 LYS 28 34 34 LYS LYS A . n A 1 29 GLU 29 35 35 GLU GLU A . n A 1 30 GLY 30 36 36 GLY GLY A . n A 1 31 VAL 31 37 37 VAL VAL A . n A 1 32 LEU 32 38 38 LEU LEU A . n A 1 33 TYR 33 39 39 TYR TYR A . n A 1 34 VAL 34 40 40 VAL VAL A . n A 1 35 GLY 35 41 41 GLY GLY A . n A 1 36 SER 36 42 42 SER SER A . n A 1 37 LYS 37 43 43 LYS LYS A . n A 1 38 THR 38 44 44 THR THR A . n A 1 39 LYS 39 45 45 LYS LYS A . n A 1 40 GLU 40 46 46 GLU GLU A . n A 1 41 GLY 41 47 47 GLY GLY A . n A 1 42 VAL 42 48 48 VAL VAL A . n A 1 43 VAL 43 49 49 VAL VAL A . n A 1 44 HIS 44 50 50 HIS HIS A . n A 1 45 GLY 45 51 51 GLY GLY A . n A 1 46 VAL 46 52 52 VAL VAL A . n A 1 47 ALA 47 53 53 ALA ALA A . n A 1 48 THR 48 54 54 THR THR A . n A 1 49 VAL 49 55 55 VAL VAL A . n A 1 50 ALA 50 56 56 ALA ALA A . n A 1 51 GLU 51 57 57 GLU GLU A . n A 1 52 LYS 52 58 58 LYS LYS A . n A 1 53 THR 53 59 59 THR THR A . n A 1 54 LYS 54 60 60 LYS LYS A . n A 1 55 GLU 55 61 61 GLU GLU A . n A 1 56 GLN 56 62 62 GLN GLN A . n A 1 57 VAL 57 63 63 VAL VAL A . n A 1 58 THR 58 64 64 THR THR A . n A 1 59 ASN 59 65 65 ASN ASN A . n A 1 60 VAL 60 66 66 VAL VAL A . n A 1 61 GLY 61 67 67 GLY GLY A . n A 1 62 GLY 62 68 68 GLY GLY A . n A 1 63 ALA 63 69 69 ALA ALA A . n A 1 64 VAL 64 70 70 VAL VAL A . n A 1 65 VAL 65 71 71 VAL VAL A . n A 1 66 THR 66 72 72 THR THR A . n A 1 67 GLY 67 73 73 GLY GLY A . n A 1 68 VAL 68 74 74 VAL VAL A . n A 1 69 THR 69 75 75 THR THR A . n A 1 70 ALA 70 76 76 ALA ALA A . n A 1 71 VAL 71 77 77 VAL VAL A . n A 1 72 ALA 72 78 78 ALA ALA A . n A 1 73 GLN 73 79 79 GLN GLN A . n A 1 74 LYS 74 80 80 LYS LYS A . n A 1 75 THR 75 81 81 THR THR A . n A 1 76 VAL 76 82 82 VAL VAL A . n A 1 77 GLU 77 83 83 GLU GLU A . n A 1 78 GLY 78 84 84 GLY GLY A . n A 1 79 ALA 79 85 85 ALA ALA A . n A 1 80 GLY 80 86 86 GLY GLY A . n A 1 81 SER 81 87 87 SER SER A . n A 1 82 ILE 82 88 88 ILE ILE A . n A 1 83 ALA 83 89 89 ALA ALA A . n A 1 84 ALA 84 90 90 ALA ALA A . n A 1 85 ALA 85 91 91 ALA ALA A . n A 1 86 THR 86 92 92 THR THR A . n A 1 87 GLY 87 93 93 GLY GLY A . n A 1 88 PHE 88 94 94 PHE PHE A . n A 1 89 VAL 89 95 95 VAL VAL A . n A 1 90 LYS 90 96 96 LYS LYS A . n B 1 1 GLY 1 7 7 GLY GLY B . n B 1 2 LEU 2 8 8 LEU LEU B . n B 1 3 SER 3 9 9 SER SER B . n B 1 4 LYS 4 10 10 LYS LYS B . n B 1 5 ALA 5 11 11 ALA ALA B . n B 1 6 LYS 6 12 12 LYS LYS B . n B 1 7 GLU 7 13 13 GLU GLU B . n B 1 8 GLY 8 14 14 GLY GLY B . n B 1 9 VAL 9 15 15 VAL VAL B . n B 1 10 VAL 10 16 16 VAL VAL B . n B 1 11 ALA 11 17 17 ALA ALA B . n B 1 12 ALA 12 18 18 ALA ALA B . n B 1 13 ALA 13 19 19 ALA ALA B . n B 1 14 GLU 14 20 20 GLU GLU B . n B 1 15 LYS 15 21 21 LYS LYS B . n B 1 16 THR 16 22 22 THR THR B . n B 1 17 LYS 17 23 23 LYS LYS B . n B 1 18 GLN 18 24 24 GLN GLN B . n B 1 19 GLY 19 25 25 GLY GLY B . n B 1 20 VAL 20 26 26 VAL VAL B . n B 1 21 ALA 21 27 27 ALA ALA B . n B 1 22 GLU 22 28 28 GLU GLU B . n B 1 23 ALA 23 29 29 ALA ALA B . n B 1 24 ALA 24 30 30 ALA ALA B . n B 1 25 GLY 25 31 31 GLY GLY B . n B 1 26 LYS 26 32 32 LYS LYS B . n B 1 27 THR 27 33 33 THR THR B . n B 1 28 LYS 28 34 34 LYS LYS B . n B 1 29 GLU 29 35 35 GLU GLU B . n B 1 30 GLY 30 36 36 GLY GLY B . n B 1 31 VAL 31 37 37 VAL VAL B . n B 1 32 LEU 32 38 38 LEU LEU B . n B 1 33 TYR 33 39 39 TYR TYR B . n B 1 34 VAL 34 40 40 VAL VAL B . n B 1 35 GLY 35 41 41 GLY GLY B . n B 1 36 SER 36 42 42 SER SER B . n B 1 37 LYS 37 43 43 LYS LYS B . n B 1 38 THR 38 44 44 THR THR B . n B 1 39 LYS 39 45 45 LYS LYS B . n B 1 40 GLU 40 46 46 GLU GLU B . n B 1 41 GLY 41 47 47 GLY GLY B . n B 1 42 VAL 42 48 48 VAL VAL B . n B 1 43 VAL 43 49 49 VAL VAL B . n B 1 44 HIS 44 50 50 HIS HIS B . n B 1 45 GLY 45 51 51 GLY GLY B . n B 1 46 VAL 46 52 52 VAL VAL B . n B 1 47 ALA 47 53 53 ALA ALA B . n B 1 48 THR 48 54 54 THR THR B . n B 1 49 VAL 49 55 55 VAL VAL B . n B 1 50 ALA 50 56 56 ALA ALA B . n B 1 51 GLU 51 57 57 GLU GLU B . n B 1 52 LYS 52 58 58 LYS LYS B . n B 1 53 THR 53 59 59 THR THR B . n B 1 54 LYS 54 60 60 LYS LYS B . n B 1 55 GLU 55 61 61 GLU GLU B . n B 1 56 GLN 56 62 62 GLN GLN B . n B 1 57 VAL 57 63 63 VAL VAL B . n B 1 58 THR 58 64 64 THR THR B . n B 1 59 ASN 59 65 65 ASN ASN B . n B 1 60 VAL 60 66 66 VAL VAL B . n B 1 61 GLY 61 67 67 GLY GLY B . n B 1 62 GLY 62 68 68 GLY GLY B . n B 1 63 ALA 63 69 69 ALA ALA B . n B 1 64 VAL 64 70 70 VAL VAL B . n B 1 65 VAL 65 71 71 VAL VAL B . n B 1 66 THR 66 72 72 THR THR B . n B 1 67 GLY 67 73 73 GLY GLY B . n B 1 68 VAL 68 74 74 VAL VAL B . n B 1 69 THR 69 75 75 THR THR B . n B 1 70 ALA 70 76 76 ALA ALA B . n B 1 71 VAL 71 77 77 VAL VAL B . n B 1 72 ALA 72 78 78 ALA ALA B . n B 1 73 GLN 73 79 79 GLN GLN B . n B 1 74 LYS 74 80 80 LYS LYS B . n B 1 75 THR 75 81 81 THR THR B . n B 1 76 VAL 76 82 82 VAL VAL B . n B 1 77 GLU 77 83 83 GLU GLU B . n B 1 78 GLY 78 84 84 GLY GLY B . n B 1 79 ALA 79 85 85 ALA ALA B . n B 1 80 GLY 80 86 86 GLY GLY B . n B 1 81 SER 81 87 87 SER SER B . n B 1 82 ILE 82 88 88 ILE ILE B . n B 1 83 ALA 83 89 89 ALA ALA B . n B 1 84 ALA 84 90 90 ALA ALA B . n B 1 85 ALA 85 91 91 ALA ALA B . n B 1 86 THR 86 92 92 THR THR B . n B 1 87 GLY 87 93 93 GLY GLY B . n B 1 88 PHE 88 94 94 PHE PHE B . n B 1 89 VAL 89 95 95 VAL VAL B . n B 1 90 LYS 90 96 96 LYS LYS B . n C 1 1 GLY 1 7 7 GLY GLY C . n C 1 2 LEU 2 8 8 LEU LEU C . n C 1 3 SER 3 9 9 SER SER C . n C 1 4 LYS 4 10 10 LYS LYS C . n C 1 5 ALA 5 11 11 ALA ALA C . n C 1 6 LYS 6 12 12 LYS LYS C . n C 1 7 GLU 7 13 13 GLU GLU C . n C 1 8 GLY 8 14 14 GLY GLY C . n C 1 9 VAL 9 15 15 VAL VAL C . n C 1 10 VAL 10 16 16 VAL VAL C . n C 1 11 ALA 11 17 17 ALA ALA C . n C 1 12 ALA 12 18 18 ALA ALA C . n C 1 13 ALA 13 19 19 ALA ALA C . n C 1 14 GLU 14 20 20 GLU GLU C . n C 1 15 LYS 15 21 21 LYS LYS C . n C 1 16 THR 16 22 22 THR THR C . n C 1 17 LYS 17 23 23 LYS LYS C . n C 1 18 GLN 18 24 24 GLN GLN C . n C 1 19 GLY 19 25 25 GLY GLY C . n C 1 20 VAL 20 26 26 VAL VAL C . n C 1 21 ALA 21 27 27 ALA ALA C . n C 1 22 GLU 22 28 28 GLU GLU C . n C 1 23 ALA 23 29 29 ALA ALA C . n C 1 24 ALA 24 30 30 ALA ALA C . n C 1 25 GLY 25 31 31 GLY GLY C . n C 1 26 LYS 26 32 32 LYS LYS C . n C 1 27 THR 27 33 33 THR THR C . n C 1 28 LYS 28 34 34 LYS LYS C . n C 1 29 GLU 29 35 35 GLU GLU C . n C 1 30 GLY 30 36 36 GLY GLY C . n C 1 31 VAL 31 37 37 VAL VAL C . n C 1 32 LEU 32 38 38 LEU LEU C . n C 1 33 TYR 33 39 39 TYR TYR C . n C 1 34 VAL 34 40 40 VAL VAL C . n C 1 35 GLY 35 41 41 GLY GLY C . n C 1 36 SER 36 42 42 SER SER C . n C 1 37 LYS 37 43 43 LYS LYS C . n C 1 38 THR 38 44 44 THR THR C . n C 1 39 LYS 39 45 45 LYS LYS C . n C 1 40 GLU 40 46 46 GLU GLU C . n C 1 41 GLY 41 47 47 GLY GLY C . n C 1 42 VAL 42 48 48 VAL VAL C . n C 1 43 VAL 43 49 49 VAL VAL C . n C 1 44 HIS 44 50 50 HIS HIS C . n C 1 45 GLY 45 51 51 GLY GLY C . n C 1 46 VAL 46 52 52 VAL VAL C . n C 1 47 ALA 47 53 53 ALA ALA C . n C 1 48 THR 48 54 54 THR THR C . n C 1 49 VAL 49 55 55 VAL VAL C . n C 1 50 ALA 50 56 56 ALA ALA C . n C 1 51 GLU 51 57 57 GLU GLU C . n C 1 52 LYS 52 58 58 LYS LYS C . n C 1 53 THR 53 59 59 THR THR C . n C 1 54 LYS 54 60 60 LYS LYS C . n C 1 55 GLU 55 61 61 GLU GLU C . n C 1 56 GLN 56 62 62 GLN GLN C . n C 1 57 VAL 57 63 63 VAL VAL C . n C 1 58 THR 58 64 64 THR THR C . n C 1 59 ASN 59 65 65 ASN ASN C . n C 1 60 VAL 60 66 66 VAL VAL C . n C 1 61 GLY 61 67 67 GLY GLY C . n C 1 62 GLY 62 68 68 GLY GLY C . n C 1 63 ALA 63 69 69 ALA ALA C . n C 1 64 VAL 64 70 70 VAL VAL C . n C 1 65 VAL 65 71 71 VAL VAL C . n C 1 66 THR 66 72 72 THR THR C . n C 1 67 GLY 67 73 73 GLY GLY C . n C 1 68 VAL 68 74 74 VAL VAL C . n C 1 69 THR 69 75 75 THR THR C . n C 1 70 ALA 70 76 76 ALA ALA C . n C 1 71 VAL 71 77 77 VAL VAL C . n C 1 72 ALA 72 78 78 ALA ALA C . n C 1 73 GLN 73 79 79 GLN GLN C . n C 1 74 LYS 74 80 80 LYS LYS C . n C 1 75 THR 75 81 81 THR THR C . n C 1 76 VAL 76 82 82 VAL VAL C . n C 1 77 GLU 77 83 83 GLU GLU C . n C 1 78 GLY 78 84 84 GLY GLY C . n C 1 79 ALA 79 85 85 ALA ALA C . n C 1 80 GLY 80 86 86 GLY GLY C . n C 1 81 SER 81 87 87 SER SER C . n C 1 82 ILE 82 88 88 ILE ILE C . n C 1 83 ALA 83 89 89 ALA ALA C . n C 1 84 ALA 84 90 90 ALA ALA C . n C 1 85 ALA 85 91 91 ALA ALA C . n C 1 86 THR 86 92 92 THR THR C . n C 1 87 GLY 87 93 93 GLY GLY C . n C 1 88 PHE 88 94 94 PHE PHE C . n C 1 89 VAL 89 95 95 VAL VAL C . n C 1 90 LYS 90 96 96 LYS LYS C . n D 1 1 GLY 1 7 7 GLY GLY D . n D 1 2 LEU 2 8 8 LEU LEU D . n D 1 3 SER 3 9 9 SER SER D . n D 1 4 LYS 4 10 10 LYS LYS D . n D 1 5 ALA 5 11 11 ALA ALA D . n D 1 6 LYS 6 12 12 LYS LYS D . n D 1 7 GLU 7 13 13 GLU GLU D . n D 1 8 GLY 8 14 14 GLY GLY D . n D 1 9 VAL 9 15 15 VAL VAL D . n D 1 10 VAL 10 16 16 VAL VAL D . n D 1 11 ALA 11 17 17 ALA ALA D . n D 1 12 ALA 12 18 18 ALA ALA D . n D 1 13 ALA 13 19 19 ALA ALA D . n D 1 14 GLU 14 20 20 GLU GLU D . n D 1 15 LYS 15 21 21 LYS LYS D . n D 1 16 THR 16 22 22 THR THR D . n D 1 17 LYS 17 23 23 LYS LYS D . n D 1 18 GLN 18 24 24 GLN GLN D . n D 1 19 GLY 19 25 25 GLY GLY D . n D 1 20 VAL 20 26 26 VAL VAL D . n D 1 21 ALA 21 27 27 ALA ALA D . n D 1 22 GLU 22 28 28 GLU GLU D . n D 1 23 ALA 23 29 29 ALA ALA D . n D 1 24 ALA 24 30 30 ALA ALA D . n D 1 25 GLY 25 31 31 GLY GLY D . n D 1 26 LYS 26 32 32 LYS LYS D . n D 1 27 THR 27 33 33 THR THR D . n D 1 28 LYS 28 34 34 LYS LYS D . n D 1 29 GLU 29 35 35 GLU GLU D . n D 1 30 GLY 30 36 36 GLY GLY D . n D 1 31 VAL 31 37 37 VAL VAL D . n D 1 32 LEU 32 38 38 LEU LEU D . n D 1 33 TYR 33 39 39 TYR TYR D . n D 1 34 VAL 34 40 40 VAL VAL D . n D 1 35 GLY 35 41 41 GLY GLY D . n D 1 36 SER 36 42 42 SER SER D . n D 1 37 LYS 37 43 43 LYS LYS D . n D 1 38 THR 38 44 44 THR THR D . n D 1 39 LYS 39 45 45 LYS LYS D . n D 1 40 GLU 40 46 46 GLU GLU D . n D 1 41 GLY 41 47 47 GLY GLY D . n D 1 42 VAL 42 48 48 VAL VAL D . n D 1 43 VAL 43 49 49 VAL VAL D . n D 1 44 HIS 44 50 50 HIS HIS D . n D 1 45 GLY 45 51 51 GLY GLY D . n D 1 46 VAL 46 52 52 VAL VAL D . n D 1 47 ALA 47 53 53 ALA ALA D . n D 1 48 THR 48 54 54 THR THR D . n D 1 49 VAL 49 55 55 VAL VAL D . n D 1 50 ALA 50 56 56 ALA ALA D . n D 1 51 GLU 51 57 57 GLU GLU D . n D 1 52 LYS 52 58 58 LYS LYS D . n D 1 53 THR 53 59 59 THR THR D . n D 1 54 LYS 54 60 60 LYS LYS D . n D 1 55 GLU 55 61 61 GLU GLU D . n D 1 56 GLN 56 62 62 GLN GLN D . n D 1 57 VAL 57 63 63 VAL VAL D . n D 1 58 THR 58 64 64 THR THR D . n D 1 59 ASN 59 65 65 ASN ASN D . n D 1 60 VAL 60 66 66 VAL VAL D . n D 1 61 GLY 61 67 67 GLY GLY D . n D 1 62 GLY 62 68 68 GLY GLY D . n D 1 63 ALA 63 69 69 ALA ALA D . n D 1 64 VAL 64 70 70 VAL VAL D . n D 1 65 VAL 65 71 71 VAL VAL D . n D 1 66 THR 66 72 72 THR THR D . n D 1 67 GLY 67 73 73 GLY GLY D . n D 1 68 VAL 68 74 74 VAL VAL D . n D 1 69 THR 69 75 75 THR THR D . n D 1 70 ALA 70 76 76 ALA ALA D . n D 1 71 VAL 71 77 77 VAL VAL D . n D 1 72 ALA 72 78 78 ALA ALA D . n D 1 73 GLN 73 79 79 GLN GLN D . n D 1 74 LYS 74 80 80 LYS LYS D . n D 1 75 THR 75 81 81 THR THR D . n D 1 76 VAL 76 82 82 VAL VAL D . n D 1 77 GLU 77 83 83 GLU GLU D . n D 1 78 GLY 78 84 84 GLY GLY D . n D 1 79 ALA 79 85 85 ALA ALA D . n D 1 80 GLY 80 86 86 GLY GLY D . n D 1 81 SER 81 87 87 SER SER D . n D 1 82 ILE 82 88 88 ILE ILE D . n D 1 83 ALA 83 89 89 ALA ALA D . n D 1 84 ALA 84 90 90 ALA ALA D . n D 1 85 ALA 85 91 91 ALA ALA D . n D 1 86 THR 86 92 92 THR THR D . n D 1 87 GLY 87 93 93 GLY GLY D . n D 1 88 PHE 88 94 94 PHE PHE D . n D 1 89 VAL 89 95 95 VAL VAL D . n D 1 90 LYS 90 96 96 LYS LYS D . n E 1 1 GLY 1 7 7 GLY GLY E . n E 1 2 LEU 2 8 8 LEU LEU E . n E 1 3 SER 3 9 9 SER SER E . n E 1 4 LYS 4 10 10 LYS LYS E . n E 1 5 ALA 5 11 11 ALA ALA E . n E 1 6 LYS 6 12 12 LYS LYS E . n E 1 7 GLU 7 13 13 GLU GLU E . n E 1 8 GLY 8 14 14 GLY GLY E . n E 1 9 VAL 9 15 15 VAL VAL E . n E 1 10 VAL 10 16 16 VAL VAL E . n E 1 11 ALA 11 17 17 ALA ALA E . n E 1 12 ALA 12 18 18 ALA ALA E . n E 1 13 ALA 13 19 19 ALA ALA E . n E 1 14 GLU 14 20 20 GLU GLU E . n E 1 15 LYS 15 21 21 LYS LYS E . n E 1 16 THR 16 22 22 THR THR E . n E 1 17 LYS 17 23 23 LYS LYS E . n E 1 18 GLN 18 24 24 GLN GLN E . n E 1 19 GLY 19 25 25 GLY GLY E . n E 1 20 VAL 20 26 26 VAL VAL E . n E 1 21 ALA 21 27 27 ALA ALA E . n E 1 22 GLU 22 28 28 GLU GLU E . n E 1 23 ALA 23 29 29 ALA ALA E . n E 1 24 ALA 24 30 30 ALA ALA E . n E 1 25 GLY 25 31 31 GLY GLY E . n E 1 26 LYS 26 32 32 LYS LYS E . n E 1 27 THR 27 33 33 THR THR E . n E 1 28 LYS 28 34 34 LYS LYS E . n E 1 29 GLU 29 35 35 GLU GLU E . n E 1 30 GLY 30 36 36 GLY GLY E . n E 1 31 VAL 31 37 37 VAL VAL E . n E 1 32 LEU 32 38 38 LEU LEU E . n E 1 33 TYR 33 39 39 TYR TYR E . n E 1 34 VAL 34 40 40 VAL VAL E . n E 1 35 GLY 35 41 41 GLY GLY E . n E 1 36 SER 36 42 42 SER SER E . n E 1 37 LYS 37 43 43 LYS LYS E . n E 1 38 THR 38 44 44 THR THR E . n E 1 39 LYS 39 45 45 LYS LYS E . n E 1 40 GLU 40 46 46 GLU GLU E . n E 1 41 GLY 41 47 47 GLY GLY E . n E 1 42 VAL 42 48 48 VAL VAL E . n E 1 43 VAL 43 49 49 VAL VAL E . n E 1 44 HIS 44 50 50 HIS HIS E . n E 1 45 GLY 45 51 51 GLY GLY E . n E 1 46 VAL 46 52 52 VAL VAL E . n E 1 47 ALA 47 53 53 ALA ALA E . n E 1 48 THR 48 54 54 THR THR E . n E 1 49 VAL 49 55 55 VAL VAL E . n E 1 50 ALA 50 56 56 ALA ALA E . n E 1 51 GLU 51 57 57 GLU GLU E . n E 1 52 LYS 52 58 58 LYS LYS E . n E 1 53 THR 53 59 59 THR THR E . n E 1 54 LYS 54 60 60 LYS LYS E . n E 1 55 GLU 55 61 61 GLU GLU E . n E 1 56 GLN 56 62 62 GLN GLN E . n E 1 57 VAL 57 63 63 VAL VAL E . n E 1 58 THR 58 64 64 THR THR E . n E 1 59 ASN 59 65 65 ASN ASN E . n E 1 60 VAL 60 66 66 VAL VAL E . n E 1 61 GLY 61 67 67 GLY GLY E . n E 1 62 GLY 62 68 68 GLY GLY E . n E 1 63 ALA 63 69 69 ALA ALA E . n E 1 64 VAL 64 70 70 VAL VAL E . n E 1 65 VAL 65 71 71 VAL VAL E . n E 1 66 THR 66 72 72 THR THR E . n E 1 67 GLY 67 73 73 GLY GLY E . n E 1 68 VAL 68 74 74 VAL VAL E . n E 1 69 THR 69 75 75 THR THR E . n E 1 70 ALA 70 76 76 ALA ALA E . n E 1 71 VAL 71 77 77 VAL VAL E . n E 1 72 ALA 72 78 78 ALA ALA E . n E 1 73 GLN 73 79 79 GLN GLN E . n E 1 74 LYS 74 80 80 LYS LYS E . n E 1 75 THR 75 81 81 THR THR E . n E 1 76 VAL 76 82 82 VAL VAL E . n E 1 77 GLU 77 83 83 GLU GLU E . n E 1 78 GLY 78 84 84 GLY GLY E . n E 1 79 ALA 79 85 85 ALA ALA E . n E 1 80 GLY 80 86 86 GLY GLY E . n E 1 81 SER 81 87 87 SER SER E . n E 1 82 ILE 82 88 88 ILE ILE E . n E 1 83 ALA 83 89 89 ALA ALA E . n E 1 84 ALA 84 90 90 ALA ALA E . n E 1 85 ALA 85 91 91 ALA ALA E . n E 1 86 THR 86 92 92 THR THR E . n E 1 87 GLY 87 93 93 GLY GLY E . n E 1 88 PHE 88 94 94 PHE PHE E . n E 1 89 VAL 89 95 95 VAL VAL E . n E 1 90 LYS 90 96 96 LYS LYS E . n F 1 1 GLY 1 7 7 GLY GLY F . n F 1 2 LEU 2 8 8 LEU LEU F . n F 1 3 SER 3 9 9 SER SER F . n F 1 4 LYS 4 10 10 LYS LYS F . n F 1 5 ALA 5 11 11 ALA ALA F . n F 1 6 LYS 6 12 12 LYS LYS F . n F 1 7 GLU 7 13 13 GLU GLU F . n F 1 8 GLY 8 14 14 GLY GLY F . n F 1 9 VAL 9 15 15 VAL VAL F . n F 1 10 VAL 10 16 16 VAL VAL F . n F 1 11 ALA 11 17 17 ALA ALA F . n F 1 12 ALA 12 18 18 ALA ALA F . n F 1 13 ALA 13 19 19 ALA ALA F . n F 1 14 GLU 14 20 20 GLU GLU F . n F 1 15 LYS 15 21 21 LYS LYS F . n F 1 16 THR 16 22 22 THR THR F . n F 1 17 LYS 17 23 23 LYS LYS F . n F 1 18 GLN 18 24 24 GLN GLN F . n F 1 19 GLY 19 25 25 GLY GLY F . n F 1 20 VAL 20 26 26 VAL VAL F . n F 1 21 ALA 21 27 27 ALA ALA F . n F 1 22 GLU 22 28 28 GLU GLU F . n F 1 23 ALA 23 29 29 ALA ALA F . n F 1 24 ALA 24 30 30 ALA ALA F . n F 1 25 GLY 25 31 31 GLY GLY F . n F 1 26 LYS 26 32 32 LYS LYS F . n F 1 27 THR 27 33 33 THR THR F . n F 1 28 LYS 28 34 34 LYS LYS F . n F 1 29 GLU 29 35 35 GLU GLU F . n F 1 30 GLY 30 36 36 GLY GLY F . n F 1 31 VAL 31 37 37 VAL VAL F . n F 1 32 LEU 32 38 38 LEU LEU F . n F 1 33 TYR 33 39 39 TYR TYR F . n F 1 34 VAL 34 40 40 VAL VAL F . n F 1 35 GLY 35 41 41 GLY GLY F . n F 1 36 SER 36 42 42 SER SER F . n F 1 37 LYS 37 43 43 LYS LYS F . n F 1 38 THR 38 44 44 THR THR F . n F 1 39 LYS 39 45 45 LYS LYS F . n F 1 40 GLU 40 46 46 GLU GLU F . n F 1 41 GLY 41 47 47 GLY GLY F . n F 1 42 VAL 42 48 48 VAL VAL F . n F 1 43 VAL 43 49 49 VAL VAL F . n F 1 44 HIS 44 50 50 HIS HIS F . n F 1 45 GLY 45 51 51 GLY GLY F . n F 1 46 VAL 46 52 52 VAL VAL F . n F 1 47 ALA 47 53 53 ALA ALA F . n F 1 48 THR 48 54 54 THR THR F . n F 1 49 VAL 49 55 55 VAL VAL F . n F 1 50 ALA 50 56 56 ALA ALA F . n F 1 51 GLU 51 57 57 GLU GLU F . n F 1 52 LYS 52 58 58 LYS LYS F . n F 1 53 THR 53 59 59 THR THR F . n F 1 54 LYS 54 60 60 LYS LYS F . n F 1 55 GLU 55 61 61 GLU GLU F . n F 1 56 GLN 56 62 62 GLN GLN F . n F 1 57 VAL 57 63 63 VAL VAL F . n F 1 58 THR 58 64 64 THR THR F . n F 1 59 ASN 59 65 65 ASN ASN F . n F 1 60 VAL 60 66 66 VAL VAL F . n F 1 61 GLY 61 67 67 GLY GLY F . n F 1 62 GLY 62 68 68 GLY GLY F . n F 1 63 ALA 63 69 69 ALA ALA F . n F 1 64 VAL 64 70 70 VAL VAL F . n F 1 65 VAL 65 71 71 VAL VAL F . n F 1 66 THR 66 72 72 THR THR F . n F 1 67 GLY 67 73 73 GLY GLY F . n F 1 68 VAL 68 74 74 VAL VAL F . n F 1 69 THR 69 75 75 THR THR F . n F 1 70 ALA 70 76 76 ALA ALA F . n F 1 71 VAL 71 77 77 VAL VAL F . n F 1 72 ALA 72 78 78 ALA ALA F . n F 1 73 GLN 73 79 79 GLN GLN F . n F 1 74 LYS 74 80 80 LYS LYS F . n F 1 75 THR 75 81 81 THR THR F . n F 1 76 VAL 76 82 82 VAL VAL F . n F 1 77 GLU 77 83 83 GLU GLU F . n F 1 78 GLY 78 84 84 GLY GLY F . n F 1 79 ALA 79 85 85 ALA ALA F . n F 1 80 GLY 80 86 86 GLY GLY F . n F 1 81 SER 81 87 87 SER SER F . n F 1 82 ILE 82 88 88 ILE ILE F . n F 1 83 ALA 83 89 89 ALA ALA F . n F 1 84 ALA 84 90 90 ALA ALA F . n F 1 85 ALA 85 91 91 ALA ALA F . n F 1 86 THR 86 92 92 THR THR F . n F 1 87 GLY 87 93 93 GLY GLY F . n F 1 88 PHE 88 94 94 PHE PHE F . n F 1 89 VAL 89 95 95 VAL VAL F . n F 1 90 LYS 90 96 96 LYS LYS F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAG 1 101 101 NAG NAG A . H 2 NAG 1 101 101 NAG NAG B . I 2 NAG 1 101 101 NAG NAG C . J 2 NAG 1 101 101 NAG NAG D . K 2 NAG 1 101 101 NAG NAG E . L 2 NAG 1 101 101 NAG NAG F . # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.20.1_4487: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8GF7 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8GF7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8GF7 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8GF7 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 3702 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.566 ? 4980 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 11.073 ? 1290 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.052 ? 636 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.001 ? 624 ? f_plane_restr ? ? # _struct.entry_id 8GF7 _struct.title 'Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8GF7 _struct_keywords.text 'alpha-synuclein, O-GlcNAc, amyloid, fibril, posttranslational modification, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYUA_HUMAN _struct_ref.pdbx_db_accession P37840 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAG SIAAATGFVK ; _struct_ref.pdbx_align_begin 7 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8GF7 A 1 ? 90 ? P37840 7 ? 96 ? 7 96 2 1 8GF7 B 1 ? 90 ? P37840 7 ? 96 ? 7 96 3 1 8GF7 C 1 ? 90 ? P37840 7 ? 96 ? 7 96 4 1 8GF7 D 1 ? 90 ? P37840 7 ? 96 ? 7 96 5 1 8GF7 E 1 ? 90 ? P37840 7 ? 96 ? 7 96 6 1 8GF7 F 1 ? 90 ? P37840 7 ? 96 ? 7 96 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A SER 81 OG ? ? ? 1_555 G NAG . C1 ? ? A SER 87 A NAG 101 1_555 ? ? ? ? ? ? ? 1.475 ? O-Glycosylation covale2 covale one ? B SER 81 OG ? ? ? 1_555 H NAG . C1 ? ? B SER 87 B NAG 101 1_555 ? ? ? ? ? ? ? 1.476 ? O-Glycosylation covale3 covale one ? C SER 81 OG ? ? ? 1_555 I NAG . C1 ? ? C SER 87 C NAG 101 1_555 ? ? ? ? ? ? ? 1.476 ? O-Glycosylation covale4 covale one ? D SER 81 OG ? ? ? 1_555 J NAG . C1 ? ? D SER 87 D NAG 101 1_555 ? ? ? ? ? ? ? 1.475 ? O-Glycosylation covale5 covale one ? E SER 81 OG ? ? ? 1_555 K NAG . C1 ? ? E SER 87 E NAG 101 1_555 ? ? ? ? ? ? ? 1.474 ? O-Glycosylation covale6 covale one ? F SER 81 OG ? ? ? 1_555 L NAG . C1 ? ? F SER 87 F NAG 101 1_555 ? ? ? ? ? ? ? 1.475 ? O-Glycosylation # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? AB2 ? 3 ? AB3 ? 3 ? AB4 ? 3 ? AB5 ? 3 ? AB6 ? 3 ? AB7 ? 3 ? AB8 ? 3 ? AB9 ? 3 ? AC1 ? 3 ? AC2 ? 3 ? AC3 ? 3 ? AC4 ? 3 ? AC5 ? 3 ? AC6 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel AB5 1 2 ? parallel AB5 2 3 ? parallel AB6 1 2 ? parallel AB6 2 3 ? parallel AB7 1 2 ? parallel AB7 2 3 ? parallel AB8 1 2 ? parallel AB8 2 3 ? parallel AB9 1 2 ? parallel AB9 2 3 ? parallel AC1 1 2 ? parallel AC1 2 3 ? parallel AC2 1 2 ? parallel AC2 2 3 ? parallel AC3 1 2 ? parallel AC3 2 3 ? parallel AC4 1 2 ? parallel AC4 2 3 ? parallel AC5 1 2 ? parallel AC5 2 3 ? parallel AC6 1 2 ? parallel AC6 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU B 2 ? SER B 3 ? LEU B 8 SER B 9 AA1 2 LEU A 2 ? SER A 3 ? LEU A 8 SER A 9 AA1 3 LEU C 2 ? SER C 3 ? LEU C 8 SER C 9 AA2 1 GLU B 7 ? LYS B 17 ? GLU B 13 LYS B 23 AA2 2 GLU A 7 ? LYS A 17 ? GLU A 13 LYS A 23 AA2 3 GLU C 7 ? LYS C 17 ? GLU C 13 LYS C 23 AA3 1 VAL B 20 ? GLY B 25 ? VAL B 26 GLY B 31 AA3 2 VAL A 20 ? GLY A 25 ? VAL A 26 GLY A 31 AA3 3 VAL C 20 ? GLY C 25 ? VAL C 26 GLY C 31 AA4 1 LEU B 32 ? LYS B 37 ? LEU B 38 LYS B 43 AA4 2 LEU A 32 ? LYS A 37 ? LEU A 38 LYS A 43 AA4 3 LEU C 32 ? LYS C 37 ? LEU C 38 LYS C 43 AA5 1 VAL B 42 ? VAL B 43 ? VAL B 48 VAL B 49 AA5 2 VAL A 42 ? VAL A 43 ? VAL A 48 VAL A 49 AA5 3 VAL C 42 ? VAL C 43 ? VAL C 48 VAL C 49 AA6 1 VAL B 46 ? THR B 48 ? VAL B 52 THR B 54 AA6 2 VAL A 46 ? THR A 48 ? VAL A 52 THR A 54 AA6 3 VAL C 46 ? THR C 48 ? VAL C 52 THR C 54 AA7 1 LYS B 54 ? VAL B 60 ? LYS B 60 VAL B 66 AA7 2 LYS A 54 ? VAL A 60 ? LYS A 60 VAL A 66 AA7 3 LYS C 54 ? VAL C 60 ? LYS C 60 VAL C 66 AA8 1 VAL B 64 ? VAL B 71 ? VAL B 70 VAL B 77 AA8 2 VAL A 64 ? VAL A 71 ? VAL A 70 VAL A 77 AA8 3 VAL C 64 ? VAL C 71 ? VAL C 70 VAL C 77 AA9 1 LYS B 74 ? THR B 75 ? LYS B 80 THR B 81 AA9 2 LYS A 74 ? THR A 75 ? LYS A 80 THR A 81 AA9 3 LYS C 74 ? THR C 75 ? LYS C 80 THR C 81 AB1 1 ALA B 79 ? GLY B 80 ? ALA B 85 GLY B 86 AB1 2 ALA A 79 ? GLY A 80 ? ALA A 85 GLY A 86 AB1 3 ALA C 79 ? GLY C 80 ? ALA C 85 GLY C 86 AB2 1 ALA B 83 ? ALA B 84 ? ALA B 89 ALA B 90 AB2 2 ALA A 83 ? ALA A 84 ? ALA A 89 ALA A 90 AB2 3 ALA C 83 ? ALA C 84 ? ALA C 89 ALA C 90 AB3 1 GLY B 87 ? VAL B 89 ? GLY B 93 VAL B 95 AB3 2 GLY A 87 ? VAL A 89 ? GLY A 93 VAL A 95 AB3 3 GLY C 87 ? VAL C 89 ? GLY C 93 VAL C 95 AB4 1 LEU D 2 ? SER D 3 ? LEU D 8 SER D 9 AB4 2 LEU E 2 ? SER E 3 ? LEU E 8 SER E 9 AB4 3 LEU F 2 ? SER F 3 ? LEU F 8 SER F 9 AB5 1 GLU D 7 ? LYS D 17 ? GLU D 13 LYS D 23 AB5 2 GLU E 7 ? LYS E 17 ? GLU E 13 LYS E 23 AB5 3 GLU F 7 ? LYS F 17 ? GLU F 13 LYS F 23 AB6 1 VAL D 20 ? GLY D 25 ? VAL D 26 GLY D 31 AB6 2 VAL E 20 ? GLY E 25 ? VAL E 26 GLY E 31 AB6 3 VAL F 20 ? GLY F 25 ? VAL F 26 GLY F 31 AB7 1 LEU D 32 ? LYS D 37 ? LEU D 38 LYS D 43 AB7 2 LEU E 32 ? LYS E 37 ? LEU E 38 LYS E 43 AB7 3 LEU F 32 ? LYS F 37 ? LEU F 38 LYS F 43 AB8 1 VAL D 42 ? VAL D 43 ? VAL D 48 VAL D 49 AB8 2 VAL E 42 ? VAL E 43 ? VAL E 48 VAL E 49 AB8 3 VAL F 42 ? VAL F 43 ? VAL F 48 VAL F 49 AB9 1 VAL D 46 ? THR D 48 ? VAL D 52 THR D 54 AB9 2 VAL E 46 ? THR E 48 ? VAL E 52 THR E 54 AB9 3 VAL F 46 ? THR F 48 ? VAL F 52 THR F 54 AC1 1 LYS D 54 ? VAL D 60 ? LYS D 60 VAL D 66 AC1 2 LYS E 54 ? VAL E 60 ? LYS E 60 VAL E 66 AC1 3 LYS F 54 ? VAL F 60 ? LYS F 60 VAL F 66 AC2 1 VAL D 64 ? VAL D 71 ? VAL D 70 VAL D 77 AC2 2 VAL E 64 ? VAL E 71 ? VAL E 70 VAL E 77 AC2 3 VAL F 64 ? VAL F 71 ? VAL F 70 VAL F 77 AC3 1 LYS D 74 ? THR D 75 ? LYS D 80 THR D 81 AC3 2 LYS E 74 ? THR E 75 ? LYS E 80 THR E 81 AC3 3 LYS F 74 ? THR F 75 ? LYS F 80 THR F 81 AC4 1 ALA D 79 ? GLY D 80 ? ALA D 85 GLY D 86 AC4 2 ALA E 79 ? GLY E 80 ? ALA E 85 GLY E 86 AC4 3 ALA F 79 ? GLY F 80 ? ALA F 85 GLY F 86 AC5 1 ALA D 83 ? ALA D 84 ? ALA D 89 ALA D 90 AC5 2 ALA E 83 ? ALA E 84 ? ALA E 89 ALA E 90 AC5 3 ALA F 83 ? ALA F 84 ? ALA F 89 ALA F 90 AC6 1 GLY D 87 ? VAL D 89 ? GLY D 93 VAL D 95 AC6 2 GLY E 87 ? VAL E 89 ? GLY E 93 VAL E 95 AC6 3 GLY F 87 ? VAL F 89 ? GLY F 93 VAL F 95 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O LEU B 2 ? O LEU B 8 N SER A 3 ? N SER A 9 AA1 2 3 N LEU A 2 ? N LEU A 8 O SER C 3 ? O SER C 9 AA2 1 2 O LYS B 17 ? O LYS B 23 N THR A 16 ? N THR A 22 AA2 2 3 N VAL A 10 ? N VAL A 16 O VAL C 9 ? O VAL C 15 AA3 1 2 O ALA B 24 ? O ALA B 30 N GLY A 25 ? N GLY A 31 AA3 2 3 N ALA A 24 ? N ALA A 30 O GLY C 25 ? O GLY C 31 AA4 1 2 O VAL B 34 ? O VAL B 40 N TYR A 33 ? N TYR A 39 AA4 2 3 N VAL A 34 ? N VAL A 40 O TYR C 33 ? O TYR C 39 AA5 1 2 O VAL B 42 ? O VAL B 48 N VAL A 43 ? N VAL A 49 AA5 2 3 N VAL A 42 ? N VAL A 48 O VAL C 43 ? O VAL C 49 AA6 1 2 O VAL B 46 ? O VAL B 52 N ALA A 47 ? N ALA A 53 AA6 2 3 N VAL A 46 ? N VAL A 52 O ALA C 47 ? O ALA C 53 AA7 1 2 O VAL B 60 ? O VAL B 66 N ASN A 59 ? N ASN A 65 AA7 2 3 N GLN A 56 ? N GLN A 62 O VAL C 57 ? O VAL C 63 AA8 1 2 O THR B 66 ? O THR B 72 N GLY A 67 ? N GLY A 73 AA8 2 3 N THR A 66 ? N THR A 72 O GLY C 67 ? O GLY C 73 AA9 1 2 O THR B 75 ? O THR B 81 N LYS A 74 ? N LYS A 80 AA9 2 3 N THR A 75 ? N THR A 81 O LYS C 74 ? O LYS C 80 AB1 1 2 O GLY B 80 ? O GLY B 86 N ALA A 79 ? N ALA A 85 AB1 2 3 N GLY A 80 ? N GLY A 86 O ALA C 79 ? O ALA C 85 AB2 1 2 O ALA B 84 ? O ALA B 90 N ALA A 83 ? N ALA A 89 AB2 2 3 N ALA A 84 ? N ALA A 90 O ALA C 83 ? O ALA C 89 AB3 1 2 O VAL B 89 ? O VAL B 95 N PHE A 88 ? N PHE A 94 AB3 2 3 N VAL A 89 ? N VAL A 95 O PHE C 88 ? O PHE C 94 AB4 1 2 N SER D 3 ? N SER D 9 O LEU E 2 ? O LEU E 8 AB4 2 3 N SER E 3 ? N SER E 9 O LEU F 2 ? O LEU F 8 AB5 1 2 N THR D 16 ? N THR D 22 O LYS E 17 ? O LYS E 23 AB5 2 3 N THR E 16 ? N THR E 22 O LYS F 17 ? O LYS F 23 AB6 1 2 N GLY D 25 ? N GLY D 31 O ALA E 24 ? O ALA E 30 AB6 2 3 N GLY E 25 ? N GLY E 31 O ALA F 24 ? O ALA F 30 AB7 1 2 N TYR D 33 ? N TYR D 39 O VAL E 34 ? O VAL E 40 AB7 2 3 N TYR E 33 ? N TYR E 39 O VAL F 34 ? O VAL F 40 AB8 1 2 N VAL D 43 ? N VAL D 49 O VAL E 42 ? O VAL E 48 AB8 2 3 N VAL E 43 ? N VAL E 49 O VAL F 42 ? O VAL F 48 AB9 1 2 N ALA D 47 ? N ALA D 53 O VAL E 46 ? O VAL E 52 AB9 2 3 N ALA E 47 ? N ALA E 53 O VAL F 46 ? O VAL F 52 AC1 1 2 N VAL D 57 ? N VAL D 63 O GLN E 56 ? O GLN E 62 AC1 2 3 N VAL E 57 ? N VAL E 63 O GLN F 56 ? O GLN F 62 AC2 1 2 N GLY D 67 ? N GLY D 73 O THR E 66 ? O THR E 72 AC2 2 3 N GLY E 67 ? N GLY E 73 O THR F 66 ? O THR F 72 AC3 1 2 N LYS D 74 ? N LYS D 80 O THR E 75 ? O THR E 81 AC3 2 3 N LYS E 74 ? N LYS E 80 O THR F 75 ? O THR F 81 AC4 1 2 N ALA D 79 ? N ALA D 85 O GLY E 80 ? O GLY E 86 AC4 2 3 N ALA E 79 ? N ALA E 85 O GLY F 80 ? O GLY F 86 AC5 1 2 N ALA D 83 ? N ALA D 89 O ALA E 84 ? O ALA E 90 AC5 2 3 N ALA E 83 ? N ALA E 89 O ALA F 84 ? O ALA F 90 AC6 1 2 N PHE D 88 ? N PHE D 94 O VAL E 89 ? O VAL E 95 AC6 2 3 N PHE E 88 ? N PHE E 94 O VAL F 89 ? O VAL F 95 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 A GLU 20 ? ? NZ C LYS 80 ? ? 1.68 2 1 CE A LYS 10 ? ? OE2 C GLU 35 ? ? 1.69 3 1 OE2 D GLU 35 ? ? CE E LYS 10 ? ? 1.73 4 1 OE2 E GLU 35 ? ? CE F LYS 10 ? ? 1.73 5 1 OE2 A GLU 35 ? ? CE B LYS 10 ? ? 1.73 6 1 NZ D LYS 80 ? ? OE2 E GLU 20 ? ? 1.73 7 1 NZ E LYS 80 ? ? OE2 F GLU 20 ? ? 1.73 8 1 NZ A LYS 80 ? ? OE2 B GLU 20 ? ? 1.78 9 1 NZ C LYS 10 ? ? CG C GLU 35 ? ? 1.82 10 1 NZ B LYS 10 ? ? CG B GLU 35 ? ? 1.82 11 1 NZ A LYS 10 ? ? CG A GLU 35 ? ? 1.82 12 1 NZ E LYS 10 ? ? CG E GLU 35 ? ? 1.82 13 1 NZ D LYS 10 ? ? CG D GLU 35 ? ? 1.82 14 1 NZ F LYS 10 ? ? CG F GLU 35 ? ? 1.82 15 1 NZ C LYS 10 ? ? OE1 C GLU 35 ? ? 1.92 16 1 NZ F LYS 10 ? ? OE1 F GLU 35 ? ? 1.92 17 1 NZ A LYS 10 ? ? OE1 A GLU 35 ? ? 1.92 18 1 NZ B LYS 10 ? ? OE1 B GLU 35 ? ? 1.92 19 1 NZ D LYS 10 ? ? OE1 D GLU 35 ? ? 1.92 20 1 NZ E LYS 10 ? ? OE1 E GLU 35 ? ? 1.92 21 1 NZ C LYS 10 ? ? CD C GLU 35 ? ? 1.94 22 1 NZ A LYS 10 ? ? CD A GLU 35 ? ? 1.94 23 1 NZ B LYS 10 ? ? CD B GLU 35 ? ? 1.94 24 1 NZ F LYS 10 ? ? CD F GLU 35 ? ? 1.94 25 1 NZ D LYS 10 ? ? CD D GLU 35 ? ? 1.94 26 1 NZ E LYS 10 ? ? CD E GLU 35 ? ? 1.94 27 1 OE1 C GLU 20 ? ? NZ C LYS 80 ? ? 1.95 28 1 OE1 F GLU 20 ? ? NZ F LYS 80 ? ? 1.95 29 1 OE1 D GLU 20 ? ? NZ D LYS 80 ? ? 1.95 30 1 OE1 A GLU 20 ? ? NZ A LYS 80 ? ? 1.95 31 1 OE1 B GLU 20 ? ? NZ B LYS 80 ? ? 1.95 32 1 OE1 E GLU 20 ? ? NZ E LYS 80 ? ? 1.95 33 1 NZ F LYS 10 ? ? CB F GLU 35 ? ? 2.07 34 1 NZ B LYS 10 ? ? CB B GLU 35 ? ? 2.07 35 1 NZ E LYS 10 ? ? CB E GLU 35 ? ? 2.07 36 1 NZ D LYS 10 ? ? CB D GLU 35 ? ? 2.07 37 1 NZ C LYS 10 ? ? CB C GLU 35 ? ? 2.07 38 1 NZ A LYS 10 ? ? CB A GLU 35 ? ? 2.07 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 11 ? ? -100.67 -61.18 2 1 ALA B 11 ? ? -100.68 -61.14 3 1 ALA C 11 ? ? -100.61 -61.17 4 1 ALA D 11 ? ? -100.72 -61.23 5 1 ALA E 11 ? ? -100.70 -61.21 6 1 ALA F 11 ? ? -100.70 -61.20 # _pdbx_entry_details.entry_id 8GF7 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8GF7 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 6A6B _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 6A6B _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 8GF7 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 22042 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'normal PBS' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'alpha-synuclein fibrils' _em_entity_assembly.details 'The protein is semi-synthesized.' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8GF7 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8GF7 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8GF7 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 GLN N N N N 31 GLN CA C N S 32 GLN C C N N 33 GLN O O N N 34 GLN CB C N N 35 GLN CG C N N 36 GLN CD C N N 37 GLN OE1 O N N 38 GLN NE2 N N N 39 GLN OXT O N N 40 GLN H H N N 41 GLN H2 H N N 42 GLN HA H N N 43 GLN HB2 H N N 44 GLN HB3 H N N 45 GLN HG2 H N N 46 GLN HG3 H N N 47 GLN HE21 H N N 48 GLN HE22 H N N 49 GLN HXT H N N 50 GLU N N N N 51 GLU CA C N S 52 GLU C C N N 53 GLU O O N N 54 GLU CB C N N 55 GLU CG C N N 56 GLU CD C N N 57 GLU OE1 O N N 58 GLU OE2 O N N 59 GLU OXT O N N 60 GLU H H N N 61 GLU H2 H N N 62 GLU HA H N N 63 GLU HB2 H N N 64 GLU HB3 H N N 65 GLU HG2 H N N 66 GLU HG3 H N N 67 GLU HE2 H N N 68 GLU HXT H N N 69 GLY N N N N 70 GLY CA C N N 71 GLY C C N N 72 GLY O O N N 73 GLY OXT O N N 74 GLY H H N N 75 GLY H2 H N N 76 GLY HA2 H N N 77 GLY HA3 H N N 78 GLY HXT H N N 79 HIS N N N N 80 HIS CA C N S 81 HIS C C N N 82 HIS O O N N 83 HIS CB C N N 84 HIS CG C Y N 85 HIS ND1 N Y N 86 HIS CD2 C Y N 87 HIS CE1 C Y N 88 HIS NE2 N Y N 89 HIS OXT O N N 90 HIS H H N N 91 HIS H2 H N N 92 HIS HA H N N 93 HIS HB2 H N N 94 HIS HB3 H N N 95 HIS HD1 H N N 96 HIS HD2 H N N 97 HIS HE1 H N N 98 HIS HE2 H N N 99 HIS HXT H N N 100 ILE N N N N 101 ILE CA C N S 102 ILE C C N N 103 ILE O O N N 104 ILE CB C N S 105 ILE CG1 C N N 106 ILE CG2 C N N 107 ILE CD1 C N N 108 ILE OXT O N N 109 ILE H H N N 110 ILE H2 H N N 111 ILE HA H N N 112 ILE HB H N N 113 ILE HG12 H N N 114 ILE HG13 H N N 115 ILE HG21 H N N 116 ILE HG22 H N N 117 ILE HG23 H N N 118 ILE HD11 H N N 119 ILE HD12 H N N 120 ILE HD13 H N N 121 ILE HXT H N N 122 LEU N N N N 123 LEU CA C N S 124 LEU C C N N 125 LEU O O N N 126 LEU CB C N N 127 LEU CG C N N 128 LEU CD1 C N N 129 LEU CD2 C N N 130 LEU OXT O N N 131 LEU H H N N 132 LEU H2 H N N 133 LEU HA H N N 134 LEU HB2 H N N 135 LEU HB3 H N N 136 LEU HG H N N 137 LEU HD11 H N N 138 LEU HD12 H N N 139 LEU HD13 H N N 140 LEU HD21 H N N 141 LEU HD22 H N N 142 LEU HD23 H N N 143 LEU HXT H N N 144 LYS N N N N 145 LYS CA C N S 146 LYS C C N N 147 LYS O O N N 148 LYS CB C N N 149 LYS CG C N N 150 LYS CD C N N 151 LYS CE C N N 152 LYS NZ N N N 153 LYS OXT O N N 154 LYS H H N N 155 LYS H2 H N N 156 LYS HA H N N 157 LYS HB2 H N N 158 LYS HB3 H N N 159 LYS HG2 H N N 160 LYS HG3 H N N 161 LYS HD2 H N N 162 LYS HD3 H N N 163 LYS HE2 H N N 164 LYS HE3 H N N 165 LYS HZ1 H N N 166 LYS HZ2 H N N 167 LYS HZ3 H N N 168 LYS HXT H N N 169 NAG C1 C N R 170 NAG C2 C N R 171 NAG C3 C N R 172 NAG C4 C N S 173 NAG C5 C N R 174 NAG C6 C N N 175 NAG C7 C N N 176 NAG C8 C N N 177 NAG N2 N N N 178 NAG O1 O N N 179 NAG O3 O N N 180 NAG O4 O N N 181 NAG O5 O N N 182 NAG O6 O N N 183 NAG O7 O N N 184 NAG H1 H N N 185 NAG H2 H N N 186 NAG H3 H N N 187 NAG H4 H N N 188 NAG H5 H N N 189 NAG H61 H N N 190 NAG H62 H N N 191 NAG H81 H N N 192 NAG H82 H N N 193 NAG H83 H N N 194 NAG HN2 H N N 195 NAG HO1 H N N 196 NAG HO3 H N N 197 NAG HO4 H N N 198 NAG HO6 H N N 199 PHE N N N N 200 PHE CA C N S 201 PHE C C N N 202 PHE O O N N 203 PHE CB C N N 204 PHE CG C Y N 205 PHE CD1 C Y N 206 PHE CD2 C Y N 207 PHE CE1 C Y N 208 PHE CE2 C Y N 209 PHE CZ C Y N 210 PHE OXT O N N 211 PHE H H N N 212 PHE H2 H N N 213 PHE HA H N N 214 PHE HB2 H N N 215 PHE HB3 H N N 216 PHE HD1 H N N 217 PHE HD2 H N N 218 PHE HE1 H N N 219 PHE HE2 H N N 220 PHE HZ H N N 221 PHE HXT H N N 222 SER N N N N 223 SER CA C N S 224 SER C C N N 225 SER O O N N 226 SER CB C N N 227 SER OG O N N 228 SER OXT O N N 229 SER H H N N 230 SER H2 H N N 231 SER HA H N N 232 SER HB2 H N N 233 SER HB3 H N N 234 SER HG H N N 235 SER HXT H N N 236 THR N N N N 237 THR CA C N S 238 THR C C N N 239 THR O O N N 240 THR CB C N R 241 THR OG1 O N N 242 THR CG2 C N N 243 THR OXT O N N 244 THR H H N N 245 THR H2 H N N 246 THR HA H N N 247 THR HB H N N 248 THR HG1 H N N 249 THR HG21 H N N 250 THR HG22 H N N 251 THR HG23 H N N 252 THR HXT H N N 253 TYR N N N N 254 TYR CA C N S 255 TYR C C N N 256 TYR O O N N 257 TYR CB C N N 258 TYR CG C Y N 259 TYR CD1 C Y N 260 TYR CD2 C Y N 261 TYR CE1 C Y N 262 TYR CE2 C Y N 263 TYR CZ C Y N 264 TYR OH O N N 265 TYR OXT O N N 266 TYR H H N N 267 TYR H2 H N N 268 TYR HA H N N 269 TYR HB2 H N N 270 TYR HB3 H N N 271 TYR HD1 H N N 272 TYR HD2 H N N 273 TYR HE1 H N N 274 TYR HE2 H N N 275 TYR HH H N N 276 TYR HXT H N N 277 VAL N N N N 278 VAL CA C N S 279 VAL C C N N 280 VAL O O N N 281 VAL CB C N N 282 VAL CG1 C N N 283 VAL CG2 C N N 284 VAL OXT O N N 285 VAL H H N N 286 VAL H2 H N N 287 VAL HA H N N 288 VAL HB H N N 289 VAL HG11 H N N 290 VAL HG12 H N N 291 VAL HG13 H N N 292 VAL HG21 H N N 293 VAL HG22 H N N 294 VAL HG23 H N N 295 VAL HXT H N N 296 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 GLN N CA sing N N 29 GLN N H sing N N 30 GLN N H2 sing N N 31 GLN CA C sing N N 32 GLN CA CB sing N N 33 GLN CA HA sing N N 34 GLN C O doub N N 35 GLN C OXT sing N N 36 GLN CB CG sing N N 37 GLN CB HB2 sing N N 38 GLN CB HB3 sing N N 39 GLN CG CD sing N N 40 GLN CG HG2 sing N N 41 GLN CG HG3 sing N N 42 GLN CD OE1 doub N N 43 GLN CD NE2 sing N N 44 GLN NE2 HE21 sing N N 45 GLN NE2 HE22 sing N N 46 GLN OXT HXT sing N N 47 GLU N CA sing N N 48 GLU N H sing N N 49 GLU N H2 sing N N 50 GLU CA C sing N N 51 GLU CA CB sing N N 52 GLU CA HA sing N N 53 GLU C O doub N N 54 GLU C OXT sing N N 55 GLU CB CG sing N N 56 GLU CB HB2 sing N N 57 GLU CB HB3 sing N N 58 GLU CG CD sing N N 59 GLU CG HG2 sing N N 60 GLU CG HG3 sing N N 61 GLU CD OE1 doub N N 62 GLU CD OE2 sing N N 63 GLU OE2 HE2 sing N N 64 GLU OXT HXT sing N N 65 GLY N CA sing N N 66 GLY N H sing N N 67 GLY N H2 sing N N 68 GLY CA C sing N N 69 GLY CA HA2 sing N N 70 GLY CA HA3 sing N N 71 GLY C O doub N N 72 GLY C OXT sing N N 73 GLY OXT HXT sing N N 74 HIS N CA sing N N 75 HIS N H sing N N 76 HIS N H2 sing N N 77 HIS CA C sing N N 78 HIS CA CB sing N N 79 HIS CA HA sing N N 80 HIS C O doub N N 81 HIS C OXT sing N N 82 HIS CB CG sing N N 83 HIS CB HB2 sing N N 84 HIS CB HB3 sing N N 85 HIS CG ND1 sing Y N 86 HIS CG CD2 doub Y N 87 HIS ND1 CE1 doub Y N 88 HIS ND1 HD1 sing N N 89 HIS CD2 NE2 sing Y N 90 HIS CD2 HD2 sing N N 91 HIS CE1 NE2 sing Y N 92 HIS CE1 HE1 sing N N 93 HIS NE2 HE2 sing N N 94 HIS OXT HXT sing N N 95 ILE N CA sing N N 96 ILE N H sing N N 97 ILE N H2 sing N N 98 ILE CA C sing N N 99 ILE CA CB sing N N 100 ILE CA HA sing N N 101 ILE C O doub N N 102 ILE C OXT sing N N 103 ILE CB CG1 sing N N 104 ILE CB CG2 sing N N 105 ILE CB HB sing N N 106 ILE CG1 CD1 sing N N 107 ILE CG1 HG12 sing N N 108 ILE CG1 HG13 sing N N 109 ILE CG2 HG21 sing N N 110 ILE CG2 HG22 sing N N 111 ILE CG2 HG23 sing N N 112 ILE CD1 HD11 sing N N 113 ILE CD1 HD12 sing N N 114 ILE CD1 HD13 sing N N 115 ILE OXT HXT sing N N 116 LEU N CA sing N N 117 LEU N H sing N N 118 LEU N H2 sing N N 119 LEU CA C sing N N 120 LEU CA CB sing N N 121 LEU CA HA sing N N 122 LEU C O doub N N 123 LEU C OXT sing N N 124 LEU CB CG sing N N 125 LEU CB HB2 sing N N 126 LEU CB HB3 sing N N 127 LEU CG CD1 sing N N 128 LEU CG CD2 sing N N 129 LEU CG HG sing N N 130 LEU CD1 HD11 sing N N 131 LEU CD1 HD12 sing N N 132 LEU CD1 HD13 sing N N 133 LEU CD2 HD21 sing N N 134 LEU CD2 HD22 sing N N 135 LEU CD2 HD23 sing N N 136 LEU OXT HXT sing N N 137 LYS N CA sing N N 138 LYS N H sing N N 139 LYS N H2 sing N N 140 LYS CA C sing N N 141 LYS CA CB sing N N 142 LYS CA HA sing N N 143 LYS C O doub N N 144 LYS C OXT sing N N 145 LYS CB CG sing N N 146 LYS CB HB2 sing N N 147 LYS CB HB3 sing N N 148 LYS CG CD sing N N 149 LYS CG HG2 sing N N 150 LYS CG HG3 sing N N 151 LYS CD CE sing N N 152 LYS CD HD2 sing N N 153 LYS CD HD3 sing N N 154 LYS CE NZ sing N N 155 LYS CE HE2 sing N N 156 LYS CE HE3 sing N N 157 LYS NZ HZ1 sing N N 158 LYS NZ HZ2 sing N N 159 LYS NZ HZ3 sing N N 160 LYS OXT HXT sing N N 161 NAG C1 C2 sing N N 162 NAG C1 O1 sing N N 163 NAG C1 O5 sing N N 164 NAG C1 H1 sing N N 165 NAG C2 C3 sing N N 166 NAG C2 N2 sing N N 167 NAG C2 H2 sing N N 168 NAG C3 C4 sing N N 169 NAG C3 O3 sing N N 170 NAG C3 H3 sing N N 171 NAG C4 C5 sing N N 172 NAG C4 O4 sing N N 173 NAG C4 H4 sing N N 174 NAG C5 C6 sing N N 175 NAG C5 O5 sing N N 176 NAG C5 H5 sing N N 177 NAG C6 O6 sing N N 178 NAG C6 H61 sing N N 179 NAG C6 H62 sing N N 180 NAG C7 C8 sing N N 181 NAG C7 N2 sing N N 182 NAG C7 O7 doub N N 183 NAG C8 H81 sing N N 184 NAG C8 H82 sing N N 185 NAG C8 H83 sing N N 186 NAG N2 HN2 sing N N 187 NAG O1 HO1 sing N N 188 NAG O3 HO3 sing N N 189 NAG O4 HO4 sing N N 190 NAG O6 HO6 sing N N 191 PHE N CA sing N N 192 PHE N H sing N N 193 PHE N H2 sing N N 194 PHE CA C sing N N 195 PHE CA CB sing N N 196 PHE CA HA sing N N 197 PHE C O doub N N 198 PHE C OXT sing N N 199 PHE CB CG sing N N 200 PHE CB HB2 sing N N 201 PHE CB HB3 sing N N 202 PHE CG CD1 doub Y N 203 PHE CG CD2 sing Y N 204 PHE CD1 CE1 sing Y N 205 PHE CD1 HD1 sing N N 206 PHE CD2 CE2 doub Y N 207 PHE CD2 HD2 sing N N 208 PHE CE1 CZ doub Y N 209 PHE CE1 HE1 sing N N 210 PHE CE2 CZ sing Y N 211 PHE CE2 HE2 sing N N 212 PHE CZ HZ sing N N 213 PHE OXT HXT sing N N 214 SER N CA sing N N 215 SER N H sing N N 216 SER N H2 sing N N 217 SER CA C sing N N 218 SER CA CB sing N N 219 SER CA HA sing N N 220 SER C O doub N N 221 SER C OXT sing N N 222 SER CB OG sing N N 223 SER CB HB2 sing N N 224 SER CB HB3 sing N N 225 SER OG HG sing N N 226 SER OXT HXT sing N N 227 THR N CA sing N N 228 THR N H sing N N 229 THR N H2 sing N N 230 THR CA C sing N N 231 THR CA CB sing N N 232 THR CA HA sing N N 233 THR C O doub N N 234 THR C OXT sing N N 235 THR CB OG1 sing N N 236 THR CB CG2 sing N N 237 THR CB HB sing N N 238 THR OG1 HG1 sing N N 239 THR CG2 HG21 sing N N 240 THR CG2 HG22 sing N N 241 THR CG2 HG23 sing N N 242 THR OXT HXT sing N N 243 TYR N CA sing N N 244 TYR N H sing N N 245 TYR N H2 sing N N 246 TYR CA C sing N N 247 TYR CA CB sing N N 248 TYR CA HA sing N N 249 TYR C O doub N N 250 TYR C OXT sing N N 251 TYR CB CG sing N N 252 TYR CB HB2 sing N N 253 TYR CB HB3 sing N N 254 TYR CG CD1 doub Y N 255 TYR CG CD2 sing Y N 256 TYR CD1 CE1 sing Y N 257 TYR CD1 HD1 sing N N 258 TYR CD2 CE2 doub Y N 259 TYR CD2 HD2 sing N N 260 TYR CE1 CZ doub Y N 261 TYR CE1 HE1 sing N N 262 TYR CE2 CZ sing Y N 263 TYR CE2 HE2 sing N N 264 TYR CZ OH sing N N 265 TYR OH HH sing N N 266 TYR OXT HXT sing N N 267 VAL N CA sing N N 268 VAL N H sing N N 269 VAL N H2 sing N N 270 VAL CA C sing N N 271 VAL CA CB sing N N 272 VAL CA HA sing N N 273 VAL C O doub N N 274 VAL C OXT sing N N 275 VAL CB CG1 sing N N 276 VAL CB CG2 sing N N 277 VAL CB HB sing N N 278 VAL CG1 HG11 sing N N 279 VAL CG1 HG12 sing N N 280 VAL CG1 HG13 sing N N 281 VAL CG2 HG21 sing N N 282 VAL CG2 HG22 sing N N 283 VAL CG2 HG23 sing N N 284 VAL OXT HXT sing N N 285 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -0.7 _em_helical_entity.axial_rise_per_subunit 4.926 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 3.6 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details '3 shots per hole' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 2 _em_image_recording.num_real_images 7270 # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? EMAN2 2.31 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.9.8.1 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? RELION 3.1 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 3.1 CLASSIFICATION ? 11 1 ? ? RELION 3.1 RECONSTRUCTION ? 12 1 ? ? RELION 3.1 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 20.1 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Michael J. Fox Foundation' 'United States' MJFF-008121 1 'National Institutes of Health/Office of the Director' 'United States' OD020103-01 2 'National Institutes of Health/Office of the Director' 'United States' OD021685-01A1 3 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' AG062418 4 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM114537 5 'Department of Energy (DOE, United States)' 'United States' DE-AC02-76SF00515 6 'Cancer Prevention and Research Institute of Texas (CPRIT)' 'United States' RP170644 7 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6A6B # _atom_sites.entry_id 8GF7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_