HEADER IMMUNE SYSTEM/DNA 14-MAR-23 8GIM TITLE STRUCTURE OF TERNARY COMPLEX OF MOUSE CGAS WITH DSDNA AND BOUND ATP: TITLE 2 WITH 10MM MG2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 147-507; COMPND 5 SYNONYM: CGAMP SYNTHASE,CGAS,M-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 COMPND 6 DOMAIN-CONTAINING PROTEIN 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PALINDROMIC DNA18; COMPND 11 CHAIN: E, F, I, J; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CGAS, MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: NHMT MCAT WT; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS TRANSFERASE-DNA COMPLEX, CGAS, ATP AND DIVALENT METAL, IMMUNE SYSTEM, KEYWDS 2 IMMUNE SYSTEM-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.WU,J.SOHN REVDAT 2 29-MAY-24 8GIM 1 JRNL REVDAT 1 22-MAY-24 8GIM 0 JRNL AUTH S.WU,S.B.GABELLI,J.SOHN JRNL TITL THE STRUCTURAL BASIS FOR 2'-5'/3'-5'-CGAMP SYNTHESIS BY JRNL TITL 2 CGAS. JRNL REF NAT COMMUN V. 15 4012 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38740774 JRNL DOI 10.1038/S41467-024-48365-3 REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 32755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 3145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6900 - 7.3500 0.98 2628 140 0.1282 0.1999 REMARK 3 2 7.3500 - 5.8500 0.98 2669 116 0.1955 0.2044 REMARK 3 3 5.8500 - 5.1100 0.99 2656 135 0.1635 0.1833 REMARK 3 4 5.1100 - 4.6500 1.00 2654 149 0.1589 0.1460 REMARK 3 5 4.6500 - 4.3100 1.00 2667 138 0.1509 0.2048 REMARK 3 6 4.3100 - 4.0600 0.99 2669 164 0.1576 0.2062 REMARK 3 7 4.0600 - 3.8600 1.00 2698 130 0.1775 0.2842 REMARK 3 8 3.8600 - 3.6900 0.98 2620 132 0.1889 0.2111 REMARK 3 9 3.6900 - 3.5500 0.98 2633 171 0.2003 0.2374 REMARK 3 10 3.5500 - 3.4300 1.00 2674 143 0.1917 0.2251 REMARK 3 11 3.4300 - 3.3200 0.99 2652 150 0.2193 0.3014 REMARK 3 12 3.3200 - 3.2200 1.00 2716 122 0.2088 0.2144 REMARK 3 13 3.2200 - 3.1400 1.00 2615 178 0.2310 0.2557 REMARK 3 14 3.1400 - 3.0600 1.00 2703 112 0.2386 0.2671 REMARK 3 15 3.0600 - 2.9900 1.00 2676 176 0.2482 0.2719 REMARK 3 16 2.9900 - 2.9300 1.00 2684 145 0.2653 0.3657 REMARK 3 17 2.9300 - 2.8700 1.00 2664 136 0.2693 0.3469 REMARK 3 18 2.8700 - 2.8200 1.00 2715 153 0.2694 0.3274 REMARK 3 19 2.8200 - 2.7700 1.00 2659 141 0.2785 0.2978 REMARK 3 20 2.7700 - 2.7200 1.00 2689 139 0.2866 0.2963 REMARK 3 21 2.7200 - 2.6800 0.98 2599 161 0.2827 0.2891 REMARK 3 22 2.6800 - 2.6300 0.87 2354 114 0.3054 0.3814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 NULL REMARK 3 ANGLE : 1.110 NULL REMARK 3 CHIRALITY : 0.054 1151 REMARK 3 PLANARITY : 0.012 1084 REMARK 3 DIHEDRAL : 23.503 1470 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 148:506) OR (CHAIN A AND RESSEQ REMARK 3 602:602) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8881 -26.8502 -20.2553 REMARK 3 T TENSOR REMARK 3 T11: 0.2495 T22: 0.3073 REMARK 3 T33: 0.3191 T12: -0.0228 REMARK 3 T13: 0.0098 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.7360 L22: 2.7983 REMARK 3 L33: 1.4944 L12: 0.4698 REMARK 3 L13: 0.3685 L23: 0.1204 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.0210 S13: -0.1309 REMARK 3 S21: -0.0510 S22: -0.0066 S23: 0.2605 REMARK 3 S31: 0.1078 S32: -0.1462 S33: -0.0233 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 148:506) OR (CHAIN C AND RESSEQ REMARK 3 602:602) REMARK 3 ORIGIN FOR THE GROUP (A): 33.7391 8.0237 -18.9254 REMARK 3 T TENSOR REMARK 3 T11: 0.3250 T22: 0.3916 REMARK 3 T33: 0.3355 T12: -0.0542 REMARK 3 T13: -0.0572 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 2.2547 L22: 3.6972 REMARK 3 L33: 1.0746 L12: 1.5126 REMARK 3 L13: -0.3139 L23: -0.3217 REMARK 3 S TENSOR REMARK 3 S11: -0.1914 S12: 0.2446 S13: 0.0473 REMARK 3 S21: -0.2668 S22: 0.1701 S23: -0.3857 REMARK 3 S31: -0.0494 S32: 0.1314 S33: 0.0155 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN E AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8932 -23.1410 -31.6761 REMARK 3 T TENSOR REMARK 3 T11: 0.5531 T22: 0.6124 REMARK 3 T33: 0.4952 T12: 0.2158 REMARK 3 T13: -0.0936 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 3.4059 L22: 1.9257 REMARK 3 L33: 2.8829 L12: 1.0389 REMARK 3 L13: -1.1808 L23: 1.6296 REMARK 3 S TENSOR REMARK 3 S11: 0.2725 S12: 0.8500 S13: 0.0428 REMARK 3 S21: -0.6058 S22: 0.1778 S23: 0.1141 REMARK 3 S31: 0.0240 S32: 0.1163 S33: -0.5371 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN F AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5659 -23.7517 -32.5091 REMARK 3 T TENSOR REMARK 3 T11: 0.5339 T22: 0.7574 REMARK 3 T33: 0.4185 T12: 0.1034 REMARK 3 T13: 0.0000 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.1662 L22: 3.2389 REMARK 3 L33: 4.0624 L12: 0.9619 REMARK 3 L13: -0.3036 L23: 0.2501 REMARK 3 S TENSOR REMARK 3 S11: 0.3173 S12: 0.8964 S13: 0.0903 REMARK 3 S21: -0.5233 S22: -0.0796 S23: 0.1174 REMARK 3 S31: -0.4312 S32: 0.8359 S33: -0.2942 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN I AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2675 8.5672 -18.1479 REMARK 3 T TENSOR REMARK 3 T11: 0.5168 T22: 0.5068 REMARK 3 T33: 0.6387 T12: 0.1193 REMARK 3 T13: -0.0574 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 3.1836 L22: 3.0984 REMARK 3 L33: 2.8940 L12: 1.4821 REMARK 3 L13: 1.2276 L23: -0.3215 REMARK 3 S TENSOR REMARK 3 S11: 0.1576 S12: -0.1680 S13: 0.4614 REMARK 3 S21: -0.0614 S22: 0.1214 S23: 0.2385 REMARK 3 S31: -0.4776 S32: -0.7278 S33: -0.3173 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN J AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6437 6.5831 -18.8839 REMARK 3 T TENSOR REMARK 3 T11: 0.6474 T22: 0.6068 REMARK 3 T33: 0.5847 T12: -0.0133 REMARK 3 T13: -0.1575 T23: 0.1980 REMARK 3 L TENSOR REMARK 3 L11: 4.5526 L22: 4.3342 REMARK 3 L33: 2.2445 L12: 0.2506 REMARK 3 L13: -0.8600 L23: 1.0365 REMARK 3 S TENSOR REMARK 3 S11: 0.1786 S12: -0.3288 S13: 0.3789 REMARK 3 S21: 0.1959 S22: 0.1202 S23: 0.4071 REMARK 3 S31: 0.4399 S32: -0.3590 S33: -0.2883 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-23. REMARK 100 THE DEPOSITION ID IS D_1000272958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.891 REMARK 200 MONOCHROMATOR : HORIZONTAL BOUNCE SI(111) DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20210205 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32755 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.630 REMARK 200 RESOLUTION RANGE LOW (A) : 29.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 32% MPD, WITH REMARK 280 0.1 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.94950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.23700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.99950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.23700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.94950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.99950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 144 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 PRO A 147 REMARK 465 PRO A 243 REMARK 465 ARG A 244 REMARK 465 GLY A 245 REMARK 465 LEU A 507 REMARK 465 GLY C 144 REMARK 465 THR C 145 REMARK 465 GLY C 146 REMARK 465 PRO C 147 REMARK 465 LYS C 240 REMARK 465 ARG C 241 REMARK 465 ILE C 242 REMARK 465 PRO C 243 REMARK 465 ARG C 244 REMARK 465 GLY C 245 REMARK 465 ASN C 246 REMARK 465 LEU C 252 REMARK 465 GLU C 253 REMARK 465 GLY C 254 REMARK 465 GLU C 255 REMARK 465 LEU C 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA F 9 O3' DA F 9 C3' -0.038 REMARK 500 DG J 11 O3' DG J 11 C3' -0.052 REMARK 500 DC J 14 O3' DC J 14 C3' -0.062 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 301 C - N - CD ANGL. DEV. = -19.5 DEGREES REMARK 500 PRO C 289 N - CD - CG ANGL. DEV. = -13.7 DEGREES REMARK 500 PRO C 301 C - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 DA E 15 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC I 14 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC J 14 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 185 -136.55 29.69 REMARK 500 SER A 207 -54.86 67.95 REMARK 500 GLU A 255 -28.93 63.46 REMARK 500 ASN A 300 53.39 -91.31 REMARK 500 PRO A 301 -71.38 36.99 REMARK 500 TRP A 331 -72.92 -114.75 REMARK 500 GLN A 359 -58.16 -23.62 REMARK 500 ASP A 434 79.68 -118.44 REMARK 500 ASN A 499 24.27 -144.72 REMARK 500 GLN C 183 -61.01 -101.22 REMARK 500 LYS C 184 14.79 -60.64 REMARK 500 GLU C 186 86.21 -61.88 REMARK 500 SER C 207 -60.75 75.00 REMARK 500 LEU C 248 3.91 -65.32 REMARK 500 ASN C 300 72.92 -117.52 REMARK 500 PRO C 301 -73.85 20.43 REMARK 500 TRP C 331 -69.02 -120.39 REMARK 500 ASN C 351 48.81 -105.59 REMARK 500 SER C 357 -85.49 -58.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 300 PRO A 301 -117.88 REMARK 500 ASN C 300 PRO C 301 -121.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE2 REMARK 620 2 ASP A 213 OD1 71.2 REMARK 620 3 ASP A 307 OD2 73.5 74.2 REMARK 620 4 ATP A 601 O2A 83.4 76.4 147.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE1 REMARK 620 2 ASP A 213 OD2 81.0 REMARK 620 3 ATP A 601 O3G 89.1 130.7 REMARK 620 4 ATP A 601 O2B 142.6 77.0 82.9 REMARK 620 5 ATP A 601 O2A 76.1 65.5 65.2 67.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 115.5 REMARK 620 3 CYS A 385 SG 105.6 126.6 REMARK 620 4 CYS A 392 SG 93.6 102.2 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 211 OE2 REMARK 620 2 ASP C 213 OD1 70.6 REMARK 620 3 ASP C 307 OD2 75.4 80.3 REMARK 620 4 ATP C 601 O2A 90.6 78.3 157.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 211 OE1 REMARK 620 2 ASP C 213 OD2 71.9 REMARK 620 3 ATP C 601 O3G 71.5 109.1 REMARK 620 4 ATP C 601 O2B 115.9 71.5 73.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 378 NE2 REMARK 620 2 CYS C 384 SG 113.4 REMARK 620 3 CYS C 385 SG 105.4 128.5 REMARK 620 4 CYS C 392 SG 100.7 98.8 106.1 REMARK 620 N 1 2 3 DBREF 8GIM A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8GIM C 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8GIM E 1 18 PDB 8GIM 8GIM 1 18 DBREF 8GIM F 1 18 PDB 8GIM 8GIM 1 18 DBREF 8GIM I 1 18 PDB 8GIM 8GIM 1 18 DBREF 8GIM J 1 18 PDB 8GIM 8GIM 1 18 SEQADV 8GIM GLY A 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIM THR A 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIM GLY A 146 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIM GLY C 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIM THR C 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8GIM GLY C 146 UNP Q8C6L5 EXPRESSION TAG SEQRES 1 A 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 A 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 A 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 A 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 A 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 A 364 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 A 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 A 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 A 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 A 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 A 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 A 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 A 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 A 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 A 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 A 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 A 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 A 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 A 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 A 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 A 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 A 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 A 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 A 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 A 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 A 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 A 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 A 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 C 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 C 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 C 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 C 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 C 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 C 364 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 C 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 C 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 C 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 C 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 C 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 C 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 C 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 C 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 C 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 C 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 C 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 C 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 C 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 C 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 C 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 C 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 C 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 C 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 C 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 C 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 C 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 C 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 E 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 E 18 DC DA DG DA DT SEQRES 1 F 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 F 18 DC DA DG DA DT SEQRES 1 I 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 I 18 DC DA DG DA DT SEQRES 1 J 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 J 18 DC DA DG DA DT HET ATP A 601 31 HET ZN A 602 1 HET MG A 603 1 HET MG A 604 1 HET ATP C 601 31 HET ZN C 602 1 HET MG C 603 1 HET MG C 604 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 7 ATP 2(C10 H16 N5 O13 P3) FORMUL 8 ZN 2(ZN 2+) FORMUL 9 MG 4(MG 2+) FORMUL 15 HOH *22(H2 O) HELIX 1 AA1 ASP A 148 ARG A 158 1 11 HELIX 2 AA2 LYS A 160 LYS A 184 1 25 HELIX 3 AA3 LEU A 248 LEU A 252 5 5 HELIX 4 AA4 SER A 258 GLU A 276 1 19 HELIX 5 AA5 PRO A 319 LYS A 323 5 5 HELIX 6 AA6 GLY A 333 GLU A 343 1 11 HELIX 7 AA7 PHE A 358 GLY A 360 5 3 HELIX 8 AA8 PHE A 367 ASN A 376 1 10 HELIX 9 AA9 CYS A 393 PHE A 412 1 20 HELIX 10 AB1 GLN A 413 PHE A 418 5 6 HELIX 11 AB2 CYS A 419 ASP A 434 1 16 HELIX 12 AB3 GLN A 436 ARG A 443 5 8 HELIX 13 AB4 ASN A 444 GLU A 463 1 20 HELIX 14 AB5 ASP A 482 ASN A 498 1 17 HELIX 15 AB6 PHE A 501 LYS A 506 5 6 HELIX 16 AB7 LYS C 149 LEU C 157 1 9 HELIX 17 AB8 LYS C 160 ARG C 185 1 26 HELIX 18 AB9 PRO C 247 PHE C 251 5 5 HELIX 19 AC1 SER C 258 GLU C 276 1 19 HELIX 20 AC2 PRO C 319 LYS C 323 5 5 HELIX 21 AC3 GLY C 333 GLU C 343 1 11 HELIX 22 AC4 PHE C 358 GLU C 361 5 4 HELIX 23 AC5 PHE C 367 ASN C 377 1 11 HELIX 24 AC6 CYS C 393 PHE C 412 1 20 HELIX 25 AC7 GLN C 413 ASP C 416 5 4 HELIX 26 AC8 CYS C 419 ASP C 434 1 16 HELIX 27 AC9 GLN C 436 ARG C 443 5 8 HELIX 28 AD1 ASN C 444 GLU C 463 1 20 HELIX 29 AD2 ASP C 482 ASN C 498 1 17 HELIX 30 AD3 ASN C 499 GLY C 500 5 2 HELIX 31 AD4 PHE C 501 LYS C 506 5 6 SHEET 1 AA1 7 GLU A 193 THR A 197 0 SHEET 2 AA1 7 GLU A 211 GLU A 219 -1 O LYS A 217 N GLU A 193 SHEET 3 AA1 7 GLU A 303 SER A 314 1 O ILE A 309 N VAL A 214 SHEET 4 AA1 7 PHE A 345 PRO A 349 -1 O LEU A 347 N LEU A 312 SHEET 5 AA1 7 THR A 362 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 AA1 7 PHE A 234 PHE A 239 -1 N TYR A 235 O TRP A 363 SHEET 7 AA1 7 ILE A 223 GLU A 227 -1 N GLN A 226 O LEU A 236 SHEET 1 AA2 5 GLU A 193 THR A 197 0 SHEET 2 AA2 5 GLU A 211 GLU A 219 -1 O LYS A 217 N GLU A 193 SHEET 3 AA2 5 GLU A 303 SER A 314 1 O ILE A 309 N VAL A 214 SHEET 4 AA2 5 ALA A 293 ARG A 299 -1 N ILE A 298 O ILE A 304 SHEET 5 AA2 5 ASP A 281 VAL A 284 -1 N ASP A 281 O ARG A 299 SHEET 1 AA3 7 GLU C 193 THR C 197 0 SHEET 2 AA3 7 GLU C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA3 7 GLU C 303 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA3 7 PHE C 345 PRO C 349 -1 O PHE C 345 N SER C 314 SHEET 5 AA3 7 TRP C 363 SER C 366 -1 O ARG C 364 N VAL C 348 SHEET 6 AA3 7 PHE C 234 LYS C 238 -1 N TYR C 235 O TRP C 363 SHEET 7 AA3 7 GLU C 224 GLU C 227 -1 N GLN C 226 O LEU C 236 SHEET 1 AA4 5 GLU C 193 THR C 197 0 SHEET 2 AA4 5 GLU C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA4 5 GLU C 303 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA4 5 ALA C 293 ARG C 299 -1 N ILE C 298 O ILE C 304 SHEET 5 AA4 5 ASP C 281 VAL C 284 -1 N SER C 283 O LEU C 297 LINK OE2 GLU A 211 MG MG A 603 1555 1555 2.24 LINK OE1 GLU A 211 MG MG A 604 1555 1555 2.08 LINK OD1 ASP A 213 MG MG A 603 1555 1555 2.42 LINK OD2 ASP A 213 MG MG A 604 1555 1555 2.29 LINK OD2 ASP A 307 MG MG A 603 1555 1555 2.18 LINK NE2 HIS A 378 ZN ZN A 602 1555 1555 2.06 LINK SG CYS A 384 ZN ZN A 602 1555 1555 2.31 LINK SG CYS A 385 ZN ZN A 602 1555 1555 2.30 LINK SG CYS A 392 ZN ZN A 602 1555 1555 2.35 LINK O2A ATP A 601 MG MG A 603 1555 1555 2.49 LINK O3G ATP A 601 MG MG A 604 1555 1555 2.16 LINK O2B ATP A 601 MG MG A 604 1555 1555 2.33 LINK O2A ATP A 601 MG MG A 604 1555 1555 2.69 LINK OE2 GLU C 211 MG MG C 603 1555 1555 2.23 LINK OE1 GLU C 211 MG MG C 604 1555 1555 2.26 LINK OD1 ASP C 213 MG MG C 603 1555 1555 2.36 LINK OD2 ASP C 213 MG MG C 604 1555 1555 2.44 LINK OD2 ASP C 307 MG MG C 603 1555 1555 2.25 LINK NE2 HIS C 378 ZN ZN C 602 1555 1555 2.14 LINK SG CYS C 384 ZN ZN C 602 1555 1555 2.30 LINK SG CYS C 385 ZN ZN C 602 1555 1555 2.26 LINK SG CYS C 392 ZN ZN C 602 1555 1555 2.36 LINK O2A ATP C 601 MG MG C 603 1555 1555 2.46 LINK O3G ATP C 601 MG MG C 604 1555 1555 2.65 LINK O2B ATP C 601 MG MG C 604 1555 1555 2.37 CRYST1 77.899 97.999 142.474 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012837 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007019 0.00000